Wall clock time and date at job start Mon Mar 8 2021 06:21:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.33329 * 125.95304 * 2 1 4 4 C 1.50694 * 122.71099 * 0.02562 * 3 2 1 5 5 O 1.42897 * 109.47555 * 44.96025 * 4 3 2 6 6 Si 1.86302 * 109.47247 * 164.95944 * 4 3 2 7 7 N 1.32126 * 114.57962 * 179.97438 * 3 2 1 8 8 C 1.29695 * 116.86397 * 0.02562 * 7 3 2 9 9 N 1.38609 * 124.94655 * 179.97438 * 8 7 3 10 10 C 1.46505 * 119.99851 * 179.72165 * 9 8 7 11 11 H 1.08999 * 112.84907 * 336.47545 * 10 9 8 12 12 C 1.53784 * 113.60893 * 107.77903 * 10 9 8 13 13 C 1.53782 * 87.07716 * 139.98283 * 12 10 9 14 14 H 1.09004 * 113.61506 * 89.11660 * 13 12 10 15 15 O 1.42897 * 113.69320 * 220.00719 * 13 12 10 16 16 C 1.42896 * 114.00359 * 247.53604 * 15 13 12 17 17 C 1.53009 * 109.47117 * 89.99338 * 16 15 13 18 18 C 1.52998 * 109.47707 * 209.99769 * 16 15 13 19 19 C 1.53776 * 113.61229 * 205.27540 * 10 9 8 20 20 S 1.70964 * 110.10073 * 0.24252 * 8 7 3 21 21 H 1.09001 * 109.46757 * 84.24015 * 1 2 3 22 22 H 1.08994 * 109.47415 * 204.24161 * 1 2 3 23 23 H 1.09000 * 109.47094 * 324.24449 * 1 2 3 24 24 H 1.09001 * 109.47283 * 284.95498 * 4 3 2 25 25 H 0.96699 * 114.00122 * 180.02562 * 5 4 3 26 26 H 1.48495 * 110.00021 * 299.99863 * 6 4 3 27 27 H 1.48503 * 110.00080 * 61.31650 * 6 4 3 28 28 H 0.97002 * 119.99993 * 0.02562 * 9 8 7 29 29 H 1.08993 * 113.61519 * 254.52564 * 12 10 9 30 30 H 1.08999 * 113.61846 * 25.43727 * 12 10 9 31 31 H 1.08998 * 109.47169 * 329.99957 * 16 15 13 32 32 H 1.08998 * 109.46694 * 180.02562 * 17 16 15 33 33 H 1.08996 * 109.47080 * 300.00663 * 17 16 15 34 34 H 1.08997 * 109.46700 * 60.00811 * 17 16 15 35 35 H 1.09001 * 109.46837 * 59.99497 * 18 16 15 36 36 H 1.09000 * 109.47578 * 180.02562 * 18 16 15 37 37 H 1.09002 * 109.46656 * 299.99919 * 18 16 15 38 38 H 1.08995 * 113.61925 * 334.57295 * 19 10 9 39 39 H 1.09005 * 113.61361 * 105.39365 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2898 1.0793 0.0000 4 6 1.7415 2.4830 0.0006 5 8 0.6806 2.5796 0.9529 6 14 3.0957 3.6785 0.4562 7 7 3.5851 0.8187 0.0005 8 6 3.9315 -0.4311 0.0005 9 7 5.2384 -0.8928 0.0005 10 6 5.5065 -2.3331 0.0066 11 1 4.6791 -2.9159 0.4114 12 6 6.0400 -2.8659 -1.3337 13 6 6.9943 -3.7492 -0.5127 14 1 6.5740 -4.7202 -0.2508 15 8 8.3081 -3.8445 -1.0667 16 6 8.6390 -5.1451 -1.5575 17 6 8.2359 -5.2525 -3.0297 18 6 10.1460 -5.3728 -1.4235 19 6 6.8728 -2.7028 0.6077 20 16 2.5412 -1.4261 -0.0071 21 1 -0.3633 0.1031 -1.0225 22 1 -0.3634 -0.9370 0.4219 23 1 -0.3633 0.8340 0.6005 24 1 1.3619 2.7252 -0.9921 25 1 0.2793 3.4578 1.0069 26 1 3.6218 3.3590 1.8076 27 1 4.1911 3.6106 -0.5443 28 1 5.9756 -0.2622 0.0009 29 1 5.3028 -3.4317 -1.9032 30 1 6.5500 -2.1109 -1.9320 31 1 8.1048 -5.8986 -0.9787 32 1 8.4879 -6.2448 -3.4038 33 1 7.1623 -5.0904 -3.1251 34 1 8.7701 -4.4991 -3.6085 35 1 10.4331 -5.2962 -0.3748 36 1 10.3984 -6.3647 -1.7983 37 1 10.6801 -4.6193 -2.0024 38 1 7.6103 -1.9031 0.5402 39 1 6.8079 -3.1356 1.6060 There are 50 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 50 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_10905400_15704122.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:21:26 Heat of formation + Delta-G solvation = -3.827942 kcal Electronic energy + Delta-G solvation = -20302.745599 eV Core-core repulsion = 17146.802033 eV Total energy + Delta-G solvation = -3155.943566 eV No. of doubly occupied orbitals = 50 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 285.119 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.27867 -40.72736 -38.47643 -37.57965 -35.38043 -33.23933 -32.45057 -29.34619 -28.19194 -26.86210 -25.92999 -25.30526 -24.05115 -22.34994 -21.58336 -20.08264 -19.40122 -18.49571 -17.96551 -17.48445 -16.81673 -16.32111 -16.19364 -15.83726 -15.75210 -15.33709 -15.19232 -14.34165 -14.27064 -14.04345 -14.02859 -13.66785 -13.61681 -13.48788 -13.40029 -13.14566 -12.98124 -12.75428 -12.50026 -12.30968 -12.04332 -11.97143 -11.81822 -11.64972 -11.04274 -10.88002 -10.50236 -10.41173 -10.11566 -8.76693 -4.94877 -0.15955 -0.00451 0.59496 1.30731 1.61162 1.72467 1.76092 2.21584 2.71742 3.15071 3.28777 3.37528 3.64373 3.70686 3.91383 3.93685 4.03818 4.09843 4.14475 4.25761 4.30163 4.38642 4.51407 4.61652 4.67715 4.71359 4.77347 4.77858 4.82902 4.83988 4.86961 4.92186 4.97699 5.08782 5.24978 5.26787 5.33227 5.53912 6.10337 6.31528 6.72191 6.93472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.237 4.237 3 C 0.071 3.929 4 C -0.035 4.035 5 O -0.553 6.553 6 Si 0.811 3.189 7 N -0.588 5.588 8 C 0.304 3.696 9 N -0.679 5.679 10 C 0.128 3.872 11 H 0.120 0.880 12 C -0.167 4.167 13 C 0.069 3.931 14 H 0.113 0.887 15 O -0.385 6.385 16 C 0.074 3.926 17 C -0.174 4.174 18 C -0.152 4.152 19 C -0.137 4.137 20 S 0.134 5.866 21 H 0.079 0.921 22 H 0.069 0.931 23 H 0.102 0.898 24 H 0.103 0.897 25 H 0.409 0.591 26 H -0.323 1.323 27 H -0.309 1.309 28 H 0.412 0.588 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.057 0.943 34 H 0.051 0.949 35 H 0.059 0.941 36 H 0.084 0.916 37 H 0.053 0.947 38 H 0.092 0.908 39 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.644 -2.350 -0.890 3.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.360 4.360 3 C -0.058 4.058 4 C -0.148 4.148 5 O -0.363 6.363 6 Si 0.720 3.280 7 N -0.317 5.317 8 C -0.067 4.067 9 N -0.318 5.318 10 C 0.023 3.977 11 H 0.138 0.862 12 C -0.206 4.206 13 C 0.011 3.989 14 H 0.131 0.869 15 O -0.304 6.304 16 C 0.017 3.983 17 C -0.231 4.231 18 C -0.209 4.209 19 C -0.175 4.175 20 S 0.382 5.618 21 H 0.097 0.903 22 H 0.088 0.912 23 H 0.120 0.880 24 H 0.121 0.879 25 H 0.261 0.739 26 H -0.253 1.253 27 H -0.238 1.238 28 H 0.250 0.750 29 H 0.104 0.896 30 H 0.101 0.899 31 H 0.094 0.906 32 H 0.095 0.905 33 H 0.076 0.924 34 H 0.070 0.930 35 H 0.078 0.922 36 H 0.102 0.898 37 H 0.072 0.928 38 H 0.110 0.890 39 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -1.280 -3.592 -0.610 3.861 hybrid contribution 0.310 0.401 -0.251 0.566 sum -0.971 -3.190 -0.861 3.444 Atomic orbital electron populations 1.20358 0.84913 1.04207 1.03585 1.25566 1.02633 0.92691 1.15117 1.19440 0.86301 0.96809 1.03222 1.24013 0.98958 0.94970 0.96844 1.86319 1.50616 1.39189 1.60225 0.95460 0.75437 0.82570 0.74546 1.65654 1.18391 1.18165 1.29482 1.23602 0.93147 0.91435 0.98471 1.44114 1.01058 1.07415 1.79243 1.22504 0.98492 0.78511 0.98217 0.86204 1.24071 0.99238 1.00074 0.97258 1.23545 0.83271 0.98529 0.93602 0.86898 1.87972 1.31744 1.32037 1.78654 1.22361 0.96921 0.84323 0.94671 1.22319 1.01755 1.02756 0.96317 1.21904 0.93870 1.02622 1.02544 1.23597 0.94995 0.99362 0.99594 1.83618 0.95034 1.09485 1.73622 0.90282 0.91194 0.87961 0.87937 0.73876 1.25256 1.23803 0.75005 0.89601 0.89862 0.90586 0.90469 0.92356 0.92958 0.92184 0.89764 0.92778 0.88999 0.88473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.14 9.97 71.24 0.71 0.57 16 2 C -0.24 -1.75 6.49 24.57 0.16 -1.59 16 3 C 0.07 0.73 6.03 41.40 0.25 0.98 16 4 C -0.04 -0.12 2.72 71.23 0.19 0.07 16 5 O -0.55 0.03 10.24 -148.98 -1.53 -1.49 16 6 Si 0.81 3.91 31.87 68.60 2.19 6.10 16 7 N -0.59 -7.88 8.60 -189.86 -1.63 -9.51 16 8 C 0.30 2.70 8.24 179.32 1.48 4.17 16 9 N -0.68 -2.80 5.51 -327.89 -1.81 -4.61 16 10 C 0.13 -0.16 4.23 45.52 0.19 0.03 16 11 H 0.12 -0.38 7.06 -2.39 -0.02 -0.40 16 12 C -0.17 0.21 7.71 31.12 0.24 0.45 16 13 C 0.07 -0.16 4.26 31.12 0.13 -0.02 16 14 H 0.11 -0.71 7.45 -2.38 -0.02 -0.73 16 15 O -0.38 -0.89 10.00 -148.98 -1.49 -2.38 16 16 C 0.07 -0.08 3.33 30.60 0.10 0.02 16 17 C -0.17 0.28 9.53 71.99 0.69 0.97 16 18 C -0.15 0.21 9.56 71.98 0.69 0.90 16 19 C -0.14 0.33 7.66 31.12 0.24 0.57 16 20 S 0.13 0.65 21.69 -56.49 -1.23 -0.58 16 21 H 0.08 -0.02 8.14 -2.39 -0.02 -0.04 16 22 H 0.07 0.02 8.14 -2.39 -0.02 0.00 16 23 H 0.10 0.20 5.71 -2.39 -0.01 0.19 16 24 H 0.10 -0.13 7.96 -2.39 -0.02 -0.15 16 25 H 0.41 -4.62 8.74 -74.06 -0.65 -5.27 16 26 H -0.32 -4.85 7.11 99.48 0.71 -4.15 16 27 H -0.31 -4.12 7.11 99.48 0.71 -3.41 16 28 H 0.41 1.71 8.85 -92.71 -0.82 0.89 16 29 H 0.09 -0.24 8.14 -2.39 -0.02 -0.26 16 30 H 0.08 0.18 8.14 -2.39 -0.02 0.16 16 31 H 0.08 -0.32 7.42 -2.39 -0.02 -0.34 16 32 H 0.08 -0.30 8.14 -2.39 -0.02 -0.32 16 33 H 0.06 -0.11 8.14 -2.39 -0.02 -0.12 16 34 H 0.05 0.05 8.14 -2.39 -0.02 0.03 16 35 H 0.06 -0.05 8.14 -2.39 -0.02 -0.07 16 36 H 0.08 -0.36 8.14 -2.39 -0.02 -0.38 16 37 H 0.05 0.04 8.14 -2.39 -0.02 0.02 16 38 H 0.09 -0.04 8.12 -2.39 -0.02 -0.06 16 39 H 0.10 -0.45 8.14 -2.38 -0.02 -0.47 16 Total: 0.00 -19.43 332.75 -0.80 -20.22 By element: Atomic # 1 Polarization: -14.49 SS G_CDS: -0.37 Total: -14.86 kcal Atomic # 6 Polarization: 2.05 SS G_CDS: 5.07 Total: 7.12 kcal Atomic # 7 Polarization: -10.69 SS G_CDS: -3.44 Total: -14.13 kcal Atomic # 8 Polarization: -0.86 SS G_CDS: -3.02 Total: -3.88 kcal Atomic # 14 Polarization: 3.91 SS G_CDS: 2.19 Total: 6.10 kcal Atomic # 16 Polarization: 0.65 SS G_CDS: -1.23 Total: -0.58 kcal Total: -19.43 -0.80 -20.22 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_10905400_15704122.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.395 kcal (2) G-P(sol) polarization free energy of solvation -19.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds