Wall clock time and date at job start Mon Mar 8 2021 06:21:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.47304 * 2 1 4 4 O 1.42899 * 109.46778 * 119.99707 * 2 1 3 5 5 C 1.42902 * 113.99903 * 90.00295 * 4 2 1 6 6 H 1.08993 * 112.90736 * 341.24804 * 5 4 2 7 7 C 1.53962 * 113.66723 * 112.55150 * 5 4 2 8 8 C 1.53782 * 87.11063 * 139.88843 * 7 5 4 9 9 H 1.08997 * 113.61225 * 89.18406 * 8 7 5 10 10 N 1.46506 * 113.68817 * 220.07794 * 8 7 5 11 11 C 1.39147 * 119.99558 * 252.53363 * 10 8 7 12 12 N 1.32333 * 119.72222 * 0.02562 * 11 10 8 13 13 C 1.32004 * 121.64962 * 179.97438 * 12 11 10 14 14 C 1.37985 * 120.89879 * 359.97438 * 13 12 11 15 15 C 1.50700 * 120.32674 * 179.97438 * 14 13 12 16 16 O 1.42903 * 109.46691 * 244.99967 * 15 14 13 17 17 Si 1.86302 * 109.47130 * 4.99438 * 15 14 13 18 18 C 1.38902 * 119.34540 * 359.97438 * 14 13 12 19 19 C 1.38445 * 118.48724 * 359.74871 * 18 14 13 20 20 F 1.35103 * 120.47177 * 180.26322 * 19 18 14 21 21 C 1.53781 * 87.08260 * 334.63747 * 8 7 5 22 22 H 1.08994 * 109.47675 * 300.00297 * 1 2 3 23 23 H 1.09005 * 109.46688 * 60.00339 * 1 2 3 24 24 H 1.09000 * 109.47291 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47675 * 239.99703 * 2 1 3 26 26 H 1.08994 * 109.47266 * 179.97438 * 3 2 1 27 27 H 1.08991 * 109.47046 * 299.99671 * 3 2 1 28 28 H 1.09004 * 109.46961 * 59.99389 * 3 2 1 29 29 H 1.08997 * 113.53543 * 25.33518 * 7 5 4 30 30 H 1.08994 * 113.66446 * 254.45720 * 7 5 4 31 31 H 0.96990 * 119.99883 * 72.53908 * 10 8 7 32 32 H 1.07998 * 119.55240 * 180.02562 * 13 12 11 33 33 H 1.08992 * 109.47383 * 124.99987 * 15 14 13 34 34 H 0.96703 * 114.00030 * 180.02562 * 16 15 14 35 35 H 1.48493 * 109.99902 * 178.68036 * 17 15 14 36 36 H 1.48498 * 110.00037 * 300.00283 * 17 15 14 37 37 H 1.08010 * 120.75832 * 179.97438 * 18 14 13 38 38 H 1.09002 * 113.61445 * 139.98212 * 21 8 7 39 39 H 1.09002 * 113.61408 * 270.79943 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0062 -0.6736 1.1668 5 6 2.2000 -2.0782 0.9887 6 1 1.6638 -2.4744 0.1265 7 6 3.6763 -2.5110 1.0492 8 6 3.2026 -3.7399 1.8431 9 1 2.9410 -4.5913 1.2148 10 7 4.0893 -4.1020 2.9517 11 6 4.8916 -5.2352 2.8593 12 7 4.8495 -5.9815 1.7672 13 6 5.5943 -7.0638 1.6388 14 6 6.4504 -7.4584 2.6465 15 6 7.2943 -8.6967 2.4865 16 8 6.8920 -9.6747 3.4476 17 14 7.0693 -9.3840 0.7696 18 6 6.5266 -6.7032 3.8098 19 6 5.7381 -5.5700 3.9141 20 9 5.7844 -4.8031 5.0255 21 6 1.9908 -2.8967 2.2737 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3634 -1.0276 -0.0005 25 1 1.8934 -0.5138 -0.8899 26 1 3.1300 1.4425 0.0005 27 1 1.6768 1.9563 -0.8899 28 1 1.6766 1.9564 0.8900 29 1 4.3051 -1.8336 1.6270 30 1 4.1003 -2.7570 0.0757 31 1 4.1171 -3.5519 3.7501 32 1 5.5333 -7.6478 0.7325 33 1 8.3431 -8.4442 2.6422 34 1 7.3942 -10.4999 3.4029 35 1 7.9207 -10.5871 0.5885 36 1 5.6434 -9.7322 0.5447 37 1 7.1886 -6.9914 4.6131 38 1 1.0542 -3.4541 2.2887 39 1 2.1584 -2.3260 3.1871 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_10905400_17656566.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:21:28 Heat of formation + Delta-G solvation = -48.923697 kcal Electronic energy + Delta-G solvation = -22013.416012 eV Core-core repulsion = 18452.448345 eV Total energy + Delta-G solvation = -3560.967667 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 283.137 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.97555 -41.49554 -40.53493 -38.40535 -37.77993 -35.41569 -33.34736 -32.98058 -31.21014 -28.14516 -26.87373 -26.66305 -25.62294 -24.01546 -22.77487 -22.20445 -20.99469 -19.21383 -18.80240 -18.51102 -18.07124 -17.72917 -16.95943 -16.71955 -16.31204 -16.00017 -15.73391 -15.68533 -15.09855 -15.02929 -14.81893 -14.24394 -14.20915 -14.03062 -13.84946 -13.59855 -13.50498 -13.23959 -13.11195 -12.76106 -12.53867 -12.28901 -12.08539 -11.93729 -11.87360 -11.57432 -11.19121 -10.74181 -10.73076 -10.42588 -10.39231 -8.77966 -4.89007 -0.10521 0.08777 1.31136 1.63399 1.92112 1.98117 2.48083 2.77095 3.01767 3.24717 3.40168 3.48768 3.55565 3.65830 3.84345 3.85414 3.89438 4.01412 4.07851 4.13726 4.29211 4.35785 4.38649 4.45808 4.68399 4.72565 4.72861 4.73490 4.82396 4.89485 4.91859 4.98201 4.98296 5.01233 5.12012 5.28583 5.30819 5.42640 5.95841 6.16184 6.38064 6.62036 6.92026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.074 3.926 3 C -0.151 4.151 4 O -0.386 6.386 5 C 0.067 3.933 6 H 0.105 0.895 7 C -0.165 4.165 8 C 0.141 3.859 9 H 0.120 0.880 10 N -0.702 5.702 11 C 0.381 3.619 12 N -0.524 5.524 13 C 0.146 3.854 14 C -0.167 4.167 15 C -0.072 4.072 16 O -0.560 6.560 17 Si 0.762 3.238 18 C -0.041 4.041 19 C -0.038 4.038 20 F -0.140 7.140 21 C -0.142 4.142 22 H 0.054 0.946 23 H 0.076 0.924 24 H 0.058 0.942 25 H 0.071 0.929 26 H 0.057 0.943 27 H 0.083 0.917 28 H 0.055 0.945 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.416 0.584 32 H 0.181 0.819 33 H 0.100 0.900 34 H 0.397 0.603 35 H -0.283 1.283 36 H -0.291 1.291 37 H 0.157 0.843 38 H 0.088 0.912 39 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.519 -0.043 -4.261 4.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.017 3.983 3 C -0.208 4.208 4 O -0.305 6.305 5 C 0.009 3.991 6 H 0.123 0.877 7 C -0.204 4.204 8 C 0.035 3.965 9 H 0.138 0.862 10 N -0.334 5.334 11 C 0.143 3.857 12 N -0.241 5.241 13 C -0.011 4.011 14 C -0.172 4.172 15 C -0.181 4.181 16 O -0.370 6.370 17 Si 0.666 3.334 18 C -0.067 4.067 19 C -0.064 4.064 20 F -0.119 7.119 21 C -0.180 4.180 22 H 0.073 0.927 23 H 0.095 0.905 24 H 0.077 0.923 25 H 0.089 0.911 26 H 0.076 0.924 27 H 0.102 0.898 28 H 0.074 0.926 29 H 0.099 0.901 30 H 0.097 0.903 31 H 0.253 0.747 32 H 0.198 0.802 33 H 0.118 0.882 34 H 0.247 0.753 35 H -0.209 1.209 36 H -0.219 1.219 37 H 0.175 0.825 38 H 0.106 0.894 39 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 0.211 0.180 -5.180 5.188 hybrid contribution 0.690 -0.816 2.152 2.402 sum 0.901 -0.636 -3.028 3.223 Atomic orbital electron populations 1.22314 0.95462 1.02531 1.02829 1.22299 0.94033 0.94060 0.87949 1.21886 1.01544 0.94431 1.02944 1.87970 1.86003 1.20043 1.36523 1.23529 0.95889 0.81115 0.98614 0.87692 1.24019 0.97533 0.97363 1.01475 1.22181 0.89504 0.96377 0.88422 0.86206 1.44579 1.42944 1.24859 1.21033 1.18598 0.89250 0.88885 0.88984 1.67326 1.26264 1.08229 1.22303 1.22678 0.88772 0.91244 0.98410 1.20032 1.02815 0.98766 0.95600 1.24793 1.00024 0.88817 1.04452 1.86550 1.64869 1.28982 1.56645 0.94210 0.78014 0.83804 0.77348 1.21462 0.96123 0.90663 0.98447 1.18125 1.05907 0.96330 0.86061 1.91466 1.95913 1.74366 1.50189 1.23615 0.98667 0.96980 0.98787 0.92673 0.90479 0.92295 0.91120 0.92431 0.89790 0.92582 0.90087 0.90306 0.74651 0.80238 0.88220 0.75258 1.20946 1.21889 0.82549 0.89388 0.89183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 0.22 9.53 71.98 0.69 0.91 16 2 C 0.07 0.00 3.22 30.59 0.10 0.10 16 3 C -0.15 0.09 9.56 71.98 0.69 0.77 16 4 O -0.39 -1.38 10.00 -148.98 -1.49 -2.87 16 5 C 0.07 -0.02 4.14 31.18 0.13 0.11 16 6 H 0.11 -0.35 7.77 -2.39 -0.02 -0.37 16 7 C -0.16 -0.05 7.72 31.18 0.24 0.20 16 8 C 0.14 0.05 4.27 45.52 0.19 0.24 16 9 H 0.12 0.12 7.41 -2.39 -0.02 0.10 16 10 N -0.70 -1.83 5.51 -321.78 -1.77 -3.60 16 11 C 0.38 2.12 7.49 133.08 1.00 3.12 16 12 N -0.52 -2.69 9.13 -193.04 -1.76 -4.46 16 13 C 0.15 0.30 9.84 84.61 0.83 1.13 16 14 C -0.17 -0.29 5.39 -19.76 -0.11 -0.40 16 15 C -0.07 0.18 2.81 71.24 0.20 0.38 16 16 O -0.56 -0.31 12.82 -148.98 -1.91 -2.22 16 17 Si 0.76 -3.20 29.88 68.60 2.05 -1.15 16 18 C -0.04 -0.15 9.82 22.48 0.22 0.08 16 19 C -0.04 -0.22 7.35 22.58 0.17 -0.06 16 20 F -0.14 -0.99 16.65 44.97 0.75 -0.24 16 21 C -0.14 0.11 7.66 31.12 0.24 0.35 16 22 H 0.05 0.04 8.14 -2.39 -0.02 0.02 16 23 H 0.08 -0.27 8.14 -2.38 -0.02 -0.29 16 24 H 0.06 -0.10 8.14 -2.39 -0.02 -0.12 16 25 H 0.07 -0.15 7.72 -2.39 -0.02 -0.17 16 26 H 0.06 0.02 8.14 -2.39 -0.02 0.00 16 27 H 0.08 -0.30 8.14 -2.39 -0.02 -0.32 16 28 H 0.06 0.06 8.14 -2.38 -0.02 0.04 16 29 H 0.08 0.22 8.14 -2.39 -0.02 0.20 16 30 H 0.08 -0.03 8.14 -2.39 -0.02 -0.05 16 31 H 0.42 0.49 8.20 -92.72 -0.76 -0.27 16 32 H 0.18 -0.49 4.87 -2.91 -0.01 -0.50 16 33 H 0.10 -0.67 7.96 -2.39 -0.02 -0.69 16 34 H 0.40 -2.99 8.74 -74.06 -0.65 -3.64 16 35 H -0.28 0.01 7.11 99.48 0.71 0.72 16 36 H -0.29 -0.75 7.05 99.48 0.70 -0.05 16 37 H 0.16 0.15 8.06 -2.91 -0.02 0.12 16 38 H 0.09 -0.19 8.14 -2.39 -0.02 -0.21 16 39 H 0.09 0.04 8.12 -2.39 -0.02 0.02 16 Total: 0.00 -13.20 329.05 0.14 -13.06 By element: Atomic # 1 Polarization: -5.14 SS G_CDS: -0.30 Total: -5.45 kcal Atomic # 6 Polarization: 2.34 SS G_CDS: 4.58 Total: 6.93 kcal Atomic # 7 Polarization: -4.52 SS G_CDS: -3.54 Total: -8.06 kcal Atomic # 8 Polarization: -1.69 SS G_CDS: -3.40 Total: -5.09 kcal Atomic # 9 Polarization: -0.99 SS G_CDS: 0.75 Total: -0.24 kcal Atomic # 14 Polarization: -3.20 SS G_CDS: 2.05 Total: -1.15 kcal Total: -13.20 0.14 -13.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_10905400_17656566.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.865 kcal (2) G-P(sol) polarization free energy of solvation -13.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds