Wall clock time and date at job start Mon Mar 8 2021 06:21:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42903 * 109.46726 * 2 1 4 4 C 1.42899 * 113.99629 * 180.02562 * 3 2 1 5 5 H 1.08996 * 112.85093 * 341.19599 * 4 3 2 6 6 C 1.53777 * 113.61571 * 112.50341 * 4 3 2 7 7 C 1.53787 * 87.08387 * 139.97997 * 6 4 3 8 8 H 1.08998 * 113.68942 * 89.13078 * 7 6 4 9 9 N 1.46500 * 113.61300 * 220.02493 * 7 6 4 10 10 C 1.38410 * 119.99493 * 252.49216 * 9 7 6 11 11 N 1.32497 * 119.21881 * 359.73193 * 10 9 7 12 12 C 1.32277 * 120.74073 * 179.71543 * 11 10 9 13 13 C 1.38603 * 119.19573 * 0.54462 * 12 11 10 14 14 C 1.50693 * 120.72124 * 179.70388 * 13 12 11 15 15 O 1.42906 * 109.47352 * 120.02624 * 14 13 12 16 16 Si 1.86299 * 109.47306 * 0.02954 * 14 13 12 17 17 C 1.38611 * 118.55961 * 359.73282 * 13 12 11 18 18 N 1.32271 * 119.19419 * 359.97438 * 17 13 12 19 19 C 1.53784 * 87.07722 * 334.56664 * 7 6 4 20 20 H 1.09001 * 109.47194 * 299.99575 * 1 2 3 21 21 H 1.08992 * 109.47399 * 59.99748 * 1 2 3 22 22 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.47398 * 120.00244 * 2 1 3 24 24 H 1.09001 * 109.47194 * 240.00425 * 2 1 3 25 25 H 1.08998 * 113.61615 * 254.52934 * 6 4 3 26 26 H 1.09003 * 113.61525 * 25.43608 * 6 4 3 27 27 H 0.96994 * 120.00421 * 72.49272 * 9 7 6 28 28 H 1.07996 * 120.39901 * 180.25478 * 12 11 10 29 29 H 1.09004 * 109.47735 * 240.02681 * 14 13 12 30 30 H 0.96703 * 113.99912 * 300.00526 * 15 14 13 31 31 H 1.48499 * 110.00288 * 179.97438 * 16 14 13 32 32 H 1.48497 * 109.99975 * 301.31885 * 16 14 13 33 33 H 1.08001 * 120.40011 * 179.97438 * 17 13 12 34 34 H 1.08998 * 113.61974 * 270.88254 * 19 7 6 35 35 H 1.09009 * 113.68395 * 139.98989 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 -0.0006 5 1 3.9279 0.5457 0.3228 6 6 4.0018 2.0466 -1.3024 7 6 4.9896 2.8316 -0.4232 8 1 5.9144 2.2934 -0.2158 9 7 5.2203 4.2039 -0.8812 10 6 6.4246 4.5424 -1.4736 11 7 7.3598 3.6144 -1.6139 12 6 8.5195 3.9034 -2.1807 13 6 8.7537 5.1971 -2.6195 14 6 10.0650 5.5658 -3.2640 15 8 9.8269 6.0406 -4.5907 16 14 11.1680 4.0659 -3.3301 17 6 7.7559 6.1445 -2.4521 18 7 6.6166 5.7879 -1.8825 19 6 3.9488 2.7252 0.7039 20 1 -0.3634 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 1.8934 -0.5139 0.8900 24 1 1.8934 -0.5138 -0.8900 25 1 4.4805 1.3053 -1.9422 26 1 3.2978 2.6808 -1.8413 27 1 4.5292 4.8752 -0.7693 28 1 9.2763 3.1416 -2.2960 29 1 10.5499 6.3479 -2.6798 30 1 9.3966 5.3952 -5.1682 31 1 12.4643 4.4161 -3.9642 32 1 11.3975 3.5434 -1.9591 33 1 7.9069 7.1615 -2.7827 34 1 3.2303 3.5448 0.7136 35 1 4.3836 2.5318 1.6846 There are 46 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 46 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_10905470_12175864.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:21:32 Heat of formation + Delta-G solvation = 13.992956 kcal Electronic energy + Delta-G solvation = -18069.672178 eV Core-core repulsion = 15070.998465 eV Total energy + Delta-G solvation = -2998.673713 eV No. of doubly occupied orbitals = 46 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.14153 -40.57236 -38.23330 -37.62150 -35.23512 -34.72953 -32.25607 -31.53618 -26.98267 -26.75042 -25.95985 -24.65217 -23.68602 -23.00968 -21.00858 -19.36982 -18.94431 -18.04194 -17.74363 -16.69276 -16.64048 -16.42053 -16.08104 -15.84000 -15.63581 -15.46178 -14.67910 -14.43194 -14.10905 -14.05727 -13.51875 -13.45126 -13.15346 -12.95758 -12.44863 -12.22697 -12.12874 -11.94135 -11.91825 -11.82697 -11.73118 -11.21853 -10.55165 -10.40625 -10.05062 -9.11182 -4.98240 0.03121 0.11894 1.32982 1.64520 1.77074 1.99556 2.75839 2.78831 3.15809 3.45680 3.53821 3.55032 3.65474 3.70895 3.80003 3.83245 3.88968 4.18599 4.23922 4.27360 4.41347 4.49756 4.55574 4.66705 4.72252 4.75526 4.83242 4.93935 4.96914 5.03015 5.05343 5.25354 5.33504 5.76231 6.00083 6.30985 6.38645 6.78609 7.23891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.050 3.950 3 O -0.395 6.395 4 C 0.066 3.934 5 H 0.109 0.891 6 C -0.165 4.165 7 C 0.144 3.856 8 H 0.122 0.878 9 N -0.681 5.681 10 C 0.552 3.448 11 N -0.575 5.575 12 C 0.194 3.806 13 C -0.287 4.287 14 C -0.048 4.048 15 O -0.555 6.555 16 Si 0.770 3.230 17 C 0.212 3.788 18 N -0.592 5.592 19 C -0.140 4.140 20 H 0.057 0.943 21 H 0.055 0.945 22 H 0.086 0.914 23 H 0.060 0.940 24 H 0.056 0.944 25 H 0.078 0.922 26 H 0.080 0.920 27 H 0.417 0.583 28 H 0.190 0.810 29 H 0.113 0.887 30 H 0.395 0.605 31 H -0.296 1.296 32 H -0.281 1.281 33 H 0.181 0.819 34 H 0.091 0.909 35 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.007 -4.489 -0.545 4.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.026 4.026 3 O -0.315 6.315 4 C 0.007 3.993 5 H 0.126 0.874 6 C -0.205 4.205 7 C 0.039 3.961 8 H 0.140 0.860 9 N -0.316 5.316 10 C 0.196 3.804 11 N -0.298 5.298 12 C 0.027 3.973 13 C -0.295 4.295 14 C -0.160 4.160 15 O -0.362 6.362 16 Si 0.676 3.324 17 C 0.044 3.956 18 N -0.315 5.315 19 C -0.179 4.179 20 H 0.076 0.924 21 H 0.074 0.926 22 H 0.105 0.895 23 H 0.078 0.922 24 H 0.074 0.926 25 H 0.097 0.903 26 H 0.099 0.901 27 H 0.256 0.744 28 H 0.206 0.794 29 H 0.130 0.870 30 H 0.245 0.755 31 H -0.224 1.224 32 H -0.208 1.208 33 H 0.198 0.802 34 H 0.110 0.890 35 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -0.037 -4.596 0.459 4.619 hybrid contribution 0.398 1.033 -0.055 1.108 sum 0.361 -3.563 0.404 3.604 Atomic orbital electron populations 1.21781 0.93564 1.03202 1.02516 1.22681 0.95918 0.83093 1.00934 1.87933 1.21100 1.27777 1.94667 1.23485 0.81063 0.98456 0.96250 0.87359 1.23992 0.98384 1.00136 0.97945 1.22232 0.98085 0.81126 0.94691 0.85994 1.44225 1.12667 1.12307 1.62417 1.19665 0.87678 0.85188 0.87910 1.67934 1.03270 1.35986 1.22571 1.23212 0.92263 0.94774 0.87047 1.21780 1.01014 0.96425 1.10293 1.24831 0.97031 1.09246 0.84883 1.86478 1.83286 1.45701 1.20773 0.93909 0.77629 0.79637 0.81247 1.23132 0.85581 1.00456 0.86382 1.68000 1.26065 1.18236 1.19166 1.23622 0.97235 0.98323 0.98702 0.92390 0.92574 0.89535 0.92200 0.92616 0.90310 0.90099 0.74443 0.79403 0.86951 0.75541 1.22402 1.20761 0.80170 0.89011 0.89048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.20 10.28 71.98 0.74 0.94 16 2 C 0.05 -0.04 6.50 71.98 0.47 0.43 16 3 O -0.40 -1.28 10.35 -148.98 -1.54 -2.82 16 4 C 0.07 -0.07 4.31 31.12 0.13 0.06 16 5 H 0.11 -0.49 7.87 -2.39 -0.02 -0.51 16 6 C -0.17 0.04 7.71 31.12 0.24 0.28 16 7 C 0.14 -0.06 4.25 45.52 0.19 0.13 16 8 H 0.12 0.00 7.36 -2.39 -0.02 -0.02 16 9 N -0.68 -1.72 5.50 -327.91 -1.80 -3.52 16 10 C 0.55 3.32 8.43 261.48 2.20 5.53 16 11 N -0.58 -2.56 9.13 -197.98 -1.81 -4.37 16 12 C 0.19 0.01 9.92 84.71 0.84 0.85 16 13 C -0.29 0.11 5.40 -19.69 -0.11 0.00 16 14 C -0.05 0.14 2.85 71.23 0.20 0.34 16 15 O -0.55 1.17 12.79 -148.98 -1.91 -0.74 16 16 Si 0.77 -3.52 29.87 68.60 2.05 -1.47 16 17 C 0.21 0.58 10.92 84.72 0.93 1.50 16 18 N -0.59 -4.02 10.46 -197.98 -2.07 -6.09 16 19 C -0.14 0.26 7.66 31.12 0.24 0.49 16 20 H 0.06 -0.01 8.14 -2.39 -0.02 -0.03 16 21 H 0.06 0.01 8.14 -2.39 -0.02 -0.01 16 22 H 0.09 -0.38 8.14 -2.39 -0.02 -0.40 16 23 H 0.06 -0.18 8.14 -2.39 -0.02 -0.20 16 24 H 0.06 -0.12 8.14 -2.39 -0.02 -0.14 16 25 H 0.08 -0.07 8.14 -2.39 -0.02 -0.08 16 26 H 0.08 0.20 8.14 -2.39 -0.02 0.18 16 27 H 0.42 0.50 8.84 -92.71 -0.82 -0.32 16 28 H 0.19 -1.10 5.04 -2.91 -0.01 -1.11 16 29 H 0.11 -0.26 7.96 -2.38 -0.02 -0.28 16 30 H 0.39 -3.78 8.70 -74.06 -0.64 -4.43 16 31 H -0.30 -0.96 7.11 99.48 0.71 -0.25 16 32 H -0.28 0.05 7.11 99.48 0.71 0.76 16 33 H 0.18 -0.12 8.06 -2.91 -0.02 -0.14 16 34 H 0.09 -0.06 8.12 -2.39 -0.02 -0.08 16 35 H 0.09 -0.33 8.14 -2.38 -0.02 -0.34 16 Total: 0.00 -14.52 297.63 -1.32 -15.84 By element: Atomic # 1 Polarization: -7.08 SS G_CDS: -0.32 Total: -7.40 kcal Atomic # 6 Polarization: 4.49 SS G_CDS: 6.08 Total: 10.57 kcal Atomic # 7 Polarization: -8.30 SS G_CDS: -5.68 Total: -13.98 kcal Atomic # 8 Polarization: -0.11 SS G_CDS: -3.45 Total: -3.56 kcal Atomic # 14 Polarization: -3.52 SS G_CDS: 2.05 Total: -1.47 kcal Total: -14.52 -1.32 -15.84 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_10905470_12175864.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.830 kcal (2) G-P(sol) polarization free energy of solvation -14.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.837 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds