Wall clock time and date at job start Mon Mar 8 2021 06:21:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42897 * 109.46964 * 2 1 4 4 C 1.42900 * 113.99967 * 180.02562 * 3 2 1 5 5 H 1.09003 * 112.91065 * 18.74792 * 4 3 2 6 6 C 1.53787 * 113.61833 * 149.99850 * 4 3 2 7 7 C 1.53781 * 87.07987 * 139.98032 * 6 4 3 8 8 H 1.09002 * 113.61228 * 89.11929 * 7 6 4 9 9 N 1.46500 * 113.61339 * 219.93875 * 7 6 4 10 10 C 1.39006 * 119.99974 * 203.47637 * 9 7 6 11 11 N 1.32396 * 119.70478 * 179.72718 * 10 9 7 12 12 C 1.31973 * 121.61931 * 179.71040 * 11 10 9 13 13 C 1.38029 * 120.85762 * 0.55892 * 12 11 10 14 14 C 1.50699 * 120.33540 * 179.74810 * 13 12 11 15 15 O 1.42902 * 109.46758 * 244.98122 * 14 13 12 16 16 Si 1.86297 * 109.47249 * 4.98041 * 14 13 12 17 17 C 1.38879 * 119.32551 * 359.72891 * 13 12 11 18 18 C 1.38300 * 118.51164 * 0.02562 * 17 13 12 19 19 C 1.53779 * 113.61316 * 247.49845 * 4 3 2 20 20 H 1.08995 * 109.46874 * 300.00149 * 1 2 3 21 21 H 1.09005 * 109.47203 * 59.99809 * 1 2 3 22 22 H 1.09000 * 109.47135 * 179.97438 * 1 2 3 23 23 H 1.09003 * 109.46735 * 240.00473 * 2 1 3 24 24 H 1.08988 * 109.47053 * 120.00014 * 2 1 3 25 25 H 1.09005 * 113.61051 * 25.43436 * 6 4 3 26 26 H 1.08996 * 113.69311 * 254.54065 * 6 4 3 27 27 H 0.96998 * 120.00149 * 23.46564 * 9 7 6 28 28 H 1.08005 * 119.57163 * 180.28786 * 12 11 10 29 29 H 1.08992 * 109.46991 * 124.98135 * 14 13 12 30 30 H 0.96696 * 114.00435 * 60.00326 * 15 14 13 31 31 H 1.48499 * 110.00337 * 58.67814 * 16 14 13 32 32 H 1.48493 * 110.00300 * 180.02562 * 16 14 13 33 33 H 1.08004 * 120.74716 * 179.97438 * 17 13 12 34 34 H 1.08000 * 120.45355 * 179.97438 * 18 17 13 35 35 H 1.09003 * 113.61775 * 105.47426 * 19 4 3 36 36 H 1.08996 * 113.61960 * 334.56152 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.9288 0.5459 -0.3236 6 6 3.9484 2.7253 -0.7052 7 6 4.9900 2.8313 0.4212 8 1 5.9141 2.2919 0.2134 9 7 5.2226 4.2036 0.8781 10 6 6.4205 4.5353 1.5006 11 7 6.6267 5.7785 1.9064 12 6 7.7473 6.1336 2.5064 13 6 8.7556 5.2163 2.7233 14 6 10.0326 5.6359 3.4046 15 8 11.1228 5.5158 2.4885 16 14 9.8847 7.4063 3.9652 17 6 8.5811 3.9027 2.3076 18 6 7.3944 3.5590 1.6862 19 6 4.0029 2.0461 1.3010 20 1 -0.3633 0.5138 0.8899 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 1.8933 -0.5138 -0.8901 24 1 1.8933 -0.5138 0.8899 25 1 3.2299 3.5450 -0.7140 26 1 4.3837 2.5335 -1.6858 27 1 4.5409 4.8809 0.7461 28 1 7.8787 7.1562 2.8281 29 1 10.2113 4.9951 4.2680 30 1 11.0311 6.0598 1.6944 31 1 8.7347 7.5508 4.8935 32 1 11.1380 7.8325 4.6381 33 1 9.3552 3.1662 2.4653 34 1 7.2257 2.5467 1.3500 35 1 4.4823 1.3046 1.9401 36 1 3.2994 2.6802 1.8407 There are 46 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 46 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_10905470_13915762.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:21:35 Heat of formation + Delta-G solvation = -3.386913 kcal Electronic energy + Delta-G solvation = -17916.371233 eV Core-core repulsion = 14982.369784 eV Total energy + Delta-G solvation = -2934.001450 eV No. of doubly occupied orbitals = 46 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 251.131 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.52842 -40.46429 -38.18470 -37.52536 -35.04040 -33.38873 -31.90361 -31.04476 -26.81965 -26.69022 -25.04133 -24.48351 -23.68511 -22.45142 -20.84419 -18.91927 -18.44813 -18.10555 -17.19851 -16.63636 -16.58103 -16.40025 -16.03663 -15.81330 -15.31725 -15.02557 -14.52193 -14.32789 -14.05195 -14.01899 -13.52833 -13.50696 -13.32817 -12.89154 -12.51899 -12.29883 -12.20962 -12.03488 -11.89721 -11.77699 -11.07940 -10.76368 -10.43434 -10.41232 -10.38067 -8.70301 -4.99163 0.21805 0.39411 1.34240 1.64353 1.97299 2.03894 2.80697 2.83990 3.43608 3.53757 3.55159 3.62229 3.79181 3.80352 3.84754 4.00073 4.08684 4.16871 4.21432 4.34725 4.37775 4.48053 4.53462 4.66333 4.72996 4.75282 4.82361 4.92926 4.95366 5.00982 5.02000 5.08515 5.24964 5.32394 5.54482 6.02125 6.31263 6.52190 6.80357 7.13075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.050 3.950 3 O -0.397 6.397 4 C 0.063 3.937 5 H 0.111 0.889 6 C -0.139 4.139 7 C 0.136 3.864 8 H 0.129 0.871 9 N -0.708 5.708 10 C 0.394 3.606 11 N -0.567 5.567 12 C 0.147 3.853 13 C -0.238 4.238 14 C -0.053 4.053 15 O -0.556 6.556 16 Si 0.764 3.236 17 C -0.012 4.012 18 C -0.241 4.241 19 C -0.171 4.171 20 H 0.054 0.946 21 H 0.057 0.943 22 H 0.086 0.914 23 H 0.061 0.939 24 H 0.055 0.945 25 H 0.087 0.913 26 H 0.094 0.906 27 H 0.406 0.594 28 H 0.169 0.831 29 H 0.107 0.893 30 H 0.394 0.606 31 H -0.289 1.289 32 H -0.296 1.296 33 H 0.147 0.853 34 H 0.152 0.848 35 H 0.081 0.919 36 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.256 -2.943 -3.267 4.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.026 4.026 3 O -0.317 6.317 4 C 0.005 3.995 5 H 0.129 0.871 6 C -0.177 4.177 7 C 0.031 3.969 8 H 0.146 0.854 9 N -0.339 5.339 10 C 0.159 3.841 11 N -0.284 5.284 12 C -0.010 4.010 13 C -0.243 4.243 14 C -0.164 4.164 15 O -0.364 6.364 16 Si 0.671 3.329 17 C -0.038 4.038 18 C -0.266 4.266 19 C -0.211 4.211 20 H 0.073 0.927 21 H 0.076 0.924 22 H 0.105 0.895 23 H 0.079 0.921 24 H 0.073 0.927 25 H 0.106 0.894 26 H 0.113 0.887 27 H 0.242 0.758 28 H 0.185 0.815 29 H 0.125 0.875 30 H 0.244 0.756 31 H -0.216 1.216 32 H -0.224 1.224 33 H 0.164 0.836 34 H 0.170 0.830 35 H 0.100 0.900 36 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -0.839 -2.230 -2.362 3.355 hybrid contribution 0.233 -1.028 0.476 1.156 sum -0.606 -3.258 -1.886 3.813 Atomic orbital electron populations 1.21787 0.93676 1.03188 1.02485 1.22670 0.95869 0.83113 1.00924 1.87939 1.21296 1.27745 1.94671 1.23553 0.81049 0.98619 0.96321 0.87121 1.23579 0.97235 0.98089 0.98822 1.22328 0.98140 0.81638 0.94824 0.85385 1.44560 1.15386 1.11271 1.62683 1.18689 0.87256 0.89074 0.89129 1.67142 1.25012 1.18351 1.17904 1.22458 0.87336 0.99296 0.91909 1.21052 0.98962 0.95845 1.08448 1.24821 0.84663 1.12051 0.94857 1.86454 1.42555 1.71697 1.35677 0.93885 0.76360 0.77424 0.85281 1.21418 0.95781 0.95591 0.91000 1.21678 0.95136 1.01120 1.08657 1.24060 0.98789 1.00210 0.97991 0.92681 0.92366 0.89545 0.92098 0.92679 0.89418 0.88732 0.75792 0.81479 0.87512 0.75604 1.21641 1.22366 0.83571 0.83041 0.90037 0.90455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.23 10.28 71.98 0.74 0.97 16 2 C 0.05 -0.07 6.50 71.98 0.47 0.40 16 3 O -0.40 -1.02 10.35 -148.98 -1.54 -2.57 16 4 C 0.06 -0.17 4.31 31.12 0.13 -0.04 16 5 H 0.11 -0.75 7.87 -2.39 -0.02 -0.76 16 6 C -0.14 0.51 7.66 31.12 0.24 0.75 16 7 C 0.14 -0.51 3.99 45.52 0.18 -0.33 16 8 H 0.13 -0.89 6.17 -2.39 -0.01 -0.91 16 9 N -0.71 -0.32 5.54 -322.03 -1.78 -2.11 16 10 C 0.39 1.52 7.65 133.06 1.02 2.54 16 11 N -0.57 -3.63 10.39 -193.25 -2.01 -5.64 16 12 C 0.15 0.42 9.84 84.62 0.83 1.26 16 13 C -0.24 -0.32 5.36 -19.76 -0.11 -0.43 16 14 C -0.05 0.01 2.82 71.24 0.20 0.21 16 15 O -0.56 -0.07 12.84 -148.98 -1.91 -1.98 16 16 Si 0.76 -0.93 29.83 68.60 2.05 1.11 16 17 C -0.01 -0.01 9.83 22.44 0.22 0.21 16 18 C -0.24 -0.21 9.28 22.50 0.21 0.00 16 19 C -0.17 0.38 7.71 31.12 0.24 0.62 16 20 H 0.05 0.01 8.14 -2.39 -0.02 -0.01 16 21 H 0.06 -0.02 8.14 -2.38 -0.02 -0.04 16 22 H 0.09 -0.40 8.14 -2.39 -0.02 -0.42 16 23 H 0.06 -0.23 8.14 -2.39 -0.02 -0.25 16 24 H 0.05 -0.15 8.14 -2.39 -0.02 -0.17 16 25 H 0.09 -0.12 8.11 -2.38 -0.02 -0.14 16 26 H 0.09 -0.56 8.14 -2.39 -0.02 -0.58 16 27 H 0.41 0.29 8.84 -92.71 -0.82 -0.53 16 28 H 0.17 -0.26 4.91 -2.91 -0.01 -0.27 16 29 H 0.11 0.06 7.96 -2.39 -0.02 0.04 16 30 H 0.39 -2.96 8.70 -74.06 -0.64 -3.60 16 31 H -0.29 -1.24 7.11 99.48 0.71 -0.53 16 32 H -0.30 -1.74 7.11 99.48 0.71 -1.03 16 33 H 0.15 -0.26 8.06 -2.91 -0.02 -0.28 16 34 H 0.15 -0.58 6.06 -2.91 -0.02 -0.60 16 35 H 0.08 -0.30 8.14 -2.39 -0.02 -0.31 16 36 H 0.08 0.14 8.14 -2.39 -0.02 0.12 16 Total: 0.00 -14.13 300.21 -1.16 -15.29 By element: Atomic # 1 Polarization: -9.94 SS G_CDS: -0.33 Total: -10.27 kcal Atomic # 6 Polarization: 1.78 SS G_CDS: 4.38 Total: 6.16 kcal Atomic # 7 Polarization: -3.96 SS G_CDS: -3.79 Total: -7.75 kcal Atomic # 8 Polarization: -1.09 SS G_CDS: -3.46 Total: -4.54 kcal Atomic # 14 Polarization: -0.93 SS G_CDS: 2.05 Total: 1.11 kcal Total: -14.13 -1.16 -15.29 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_10905470_13915762.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.900 kcal (2) G-P(sol) polarization free energy of solvation -14.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds