Wall clock time and date at job start Mon Mar 8 2021 06:21:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42903 * 109.47055 * 2 1 4 4 C 1.42900 * 114.00352 * 180.02562 * 3 2 1 5 5 H 1.09001 * 112.90631 * 341.24856 * 4 3 2 6 6 C 1.53778 * 113.61638 * 112.50378 * 4 3 2 7 7 C 1.53779 * 87.08140 * 139.98187 * 6 4 3 8 8 H 1.09000 * 113.69088 * 89.12571 * 7 6 4 9 9 N 1.46501 * 113.61359 * 220.01674 * 7 6 4 10 10 C 1.38609 * 120.00319 * 252.49750 * 9 7 6 11 11 N 1.29689 * 124.94704 * 359.95720 * 10 9 7 12 12 C 1.32119 * 116.86486 * 180.02562 * 11 10 9 13 13 C 1.33320 * 114.58192 * 359.97438 * 12 11 10 14 14 C 1.50698 * 125.95578 * 180.02562 * 13 12 11 15 15 O 1.42900 * 109.46795 * 299.97920 * 14 13 12 16 16 Si 1.86292 * 109.47554 * 179.97438 * 14 13 12 17 17 S 1.70961 * 124.95151 * 180.02562 * 10 9 7 18 18 C 1.53778 * 87.08270 * 334.56664 * 7 6 4 19 19 H 1.09010 * 109.46788 * 180.02562 * 1 2 3 20 20 H 1.08995 * 109.47265 * 299.99766 * 1 2 3 21 21 H 1.08994 * 109.47412 * 60.00229 * 1 2 3 22 22 H 1.09002 * 109.47638 * 240.00161 * 2 1 3 23 23 H 1.08994 * 109.47412 * 119.99771 * 2 1 3 24 24 H 1.09000 * 113.61554 * 25.43273 * 6 4 3 25 25 H 1.09003 * 113.61107 * 254.52858 * 6 4 3 26 26 H 0.97006 * 119.99700 * 72.49788 * 9 7 6 27 27 H 1.07998 * 122.70428 * 180.02562 * 12 11 10 28 28 H 1.09003 * 109.47018 * 59.97533 * 14 13 12 29 29 H 0.96703 * 113.99939 * 299.99408 * 15 14 13 30 30 H 1.48502 * 110.00161 * 179.97438 * 16 14 13 31 31 H 1.48504 * 110.00102 * 301.31838 * 16 14 13 32 32 H 1.09003 * 113.61843 * 139.98190 * 18 7 6 33 33 H 1.09000 * 113.61596 * 270.80172 * 18 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 -0.0006 5 1 3.9290 0.5459 0.3218 6 6 4.0018 2.0467 -1.3024 7 6 4.9895 2.8316 -0.4232 8 1 5.9144 2.2934 -0.2157 9 7 5.2203 4.2039 -0.8812 10 6 6.4263 4.5430 -1.4745 11 7 7.4135 3.7252 -1.6707 12 6 8.4922 4.2199 -2.2514 13 6 8.4117 5.5144 -2.5599 14 6 9.4870 6.3340 -3.2256 15 8 10.6624 6.3275 -2.4130 16 14 8.8897 8.0855 -3.4401 17 16 6.8297 6.1005 -2.0527 18 6 3.9488 2.7253 0.7040 19 1 -0.3633 -1.0278 0.0005 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8899 22 1 1.8934 -0.5138 -0.8900 23 1 1.8933 -0.5138 0.8899 24 1 3.2978 2.6808 -1.8413 25 1 4.4806 1.3053 -1.9421 26 1 4.5292 4.8753 -0.7692 27 1 9.3681 3.6236 -2.4600 28 1 9.7176 5.9067 -4.2015 29 1 10.5308 6.6945 -1.5280 30 1 9.9415 8.9041 -4.0950 31 1 7.6497 8.1029 -4.2569 32 1 4.3848 2.5317 1.6841 33 1 3.2311 3.5456 0.7145 There are 44 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 44 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_10905470_15704118.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:21:38 Heat of formation + Delta-G solvation = 3.714490 kcal Electronic energy + Delta-G solvation = -16566.064967 eV Core-core repulsion = 13721.523704 eV Total energy + Delta-G solvation = -2844.541263 eV No. of doubly occupied orbitals = 44 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 257.087 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.05846 -40.27871 -38.12063 -37.56454 -34.94553 -31.86455 -31.13903 -26.98437 -26.71772 -25.55926 -24.05746 -23.62836 -21.40049 -20.72517 -19.49025 -18.46220 -17.75083 -17.07332 -16.65561 -16.43477 -16.37872 -15.89289 -15.77866 -15.40888 -14.93004 -14.53356 -14.14713 -13.98007 -13.52454 -13.45536 -12.94853 -12.89079 -12.51238 -12.43963 -12.14008 -12.05244 -11.90069 -11.81304 -11.12128 -10.81475 -10.42507 -10.28966 -10.17789 -8.75215 -5.11190 -0.07665 0.00332 0.65531 1.26561 1.57612 1.87946 1.95619 2.11838 2.79572 3.43551 3.51031 3.52573 3.68750 3.80945 3.86148 3.93159 4.16809 4.23645 4.38621 4.47848 4.48187 4.67321 4.70081 4.71057 4.81041 4.90879 4.95068 4.96745 5.01999 5.19970 5.26667 5.83877 6.12148 6.29606 6.72705 6.98514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.050 3.950 3 O -0.393 6.393 4 C 0.064 3.936 5 H 0.103 0.897 6 C -0.168 4.168 7 C 0.144 3.856 8 H 0.111 0.889 9 N -0.673 5.673 10 C 0.315 3.685 11 N -0.578 5.578 12 C 0.104 3.896 13 C -0.309 4.309 14 C -0.013 4.013 15 O -0.550 6.550 16 Si 0.730 3.270 17 S 0.115 5.885 18 C -0.135 4.135 19 H 0.085 0.915 20 H 0.059 0.941 21 H 0.056 0.944 22 H 0.052 0.948 23 H 0.059 0.941 24 H 0.086 0.914 25 H 0.069 0.931 26 H 0.425 0.575 27 H 0.179 0.821 28 H 0.118 0.882 29 H 0.395 0.605 30 H -0.271 1.271 31 H -0.269 1.269 32 H 0.092 0.908 33 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.399 0.423 3.243 4.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.027 4.027 3 O -0.312 6.312 4 C 0.005 3.995 5 H 0.121 0.879 6 C -0.208 4.208 7 C 0.037 3.963 8 H 0.129 0.871 9 N -0.312 5.312 10 C -0.055 4.055 11 N -0.304 5.304 12 C -0.046 4.046 13 C -0.432 4.432 14 C -0.127 4.127 15 O -0.358 6.358 16 Si 0.634 3.366 17 S 0.364 5.636 18 C -0.173 4.173 19 H 0.104 0.896 20 H 0.078 0.922 21 H 0.075 0.925 22 H 0.071 0.929 23 H 0.078 0.922 24 H 0.105 0.895 25 H 0.088 0.912 26 H 0.264 0.736 27 H 0.196 0.804 28 H 0.136 0.864 29 H 0.245 0.755 30 H -0.197 1.197 31 H -0.195 1.195 32 H 0.111 0.889 33 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -3.055 1.211 2.349 4.040 hybrid contribution 0.651 -1.212 -0.559 1.486 sum -2.404 -0.001 1.790 2.997 Atomic orbital electron populations 1.21775 0.93398 1.03201 1.02615 1.22672 0.96027 0.83158 1.00796 1.87924 1.20967 1.27646 1.94662 1.23485 0.81093 0.98592 0.96303 0.87877 1.24025 0.98566 1.00204 0.97987 1.22184 0.97726 0.81649 0.94775 0.87061 1.44068 1.11996 1.12170 1.63004 1.23979 0.91609 0.93941 0.96005 1.66468 1.01814 1.36372 1.25774 1.21437 0.95757 0.92322 0.95131 1.25706 1.00418 0.99116 1.17937 1.24216 0.84986 1.08111 0.95345 1.86477 1.31852 1.86732 1.30704 0.94095 0.78352 0.75306 0.88889 1.83835 1.11634 1.09899 1.58210 1.23593 0.97024 0.98172 0.98521 0.89630 0.92194 0.92523 0.92922 0.92249 0.89540 0.91233 0.73581 0.80447 0.86449 0.75479 1.19690 1.19526 0.88942 0.88251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.23 10.28 71.98 0.74 0.97 16 2 C 0.05 -0.03 6.50 71.98 0.47 0.43 16 3 O -0.39 -1.07 10.35 -148.98 -1.54 -2.61 16 4 C 0.06 -0.08 4.31 31.12 0.13 0.06 16 5 H 0.10 -0.38 7.87 -2.39 -0.02 -0.40 16 6 C -0.17 0.03 7.71 31.12 0.24 0.27 16 7 C 0.14 -0.16 4.36 45.52 0.20 0.03 16 8 H 0.11 0.13 7.66 -2.39 -0.02 0.12 16 9 N -0.67 0.65 5.51 -327.90 -1.81 -1.16 16 10 C 0.32 0.96 8.09 179.32 1.45 2.42 16 11 N -0.58 -3.86 9.83 -202.04 -1.99 -5.85 16 12 C 0.10 0.49 11.22 83.54 0.94 1.43 16 13 C -0.31 -0.59 5.74 24.57 0.14 -0.45 16 14 C -0.01 0.00 2.99 71.24 0.21 0.21 16 15 O -0.55 -0.22 12.87 -148.98 -1.92 -2.14 16 16 Si 0.73 -0.79 31.05 68.60 2.13 1.34 16 17 S 0.11 0.01 20.57 -56.49 -1.16 -1.15 16 18 C -0.13 0.45 7.66 31.12 0.24 0.69 16 19 H 0.08 -0.38 8.14 -2.38 -0.02 -0.40 16 20 H 0.06 -0.04 8.14 -2.39 -0.02 -0.06 16 21 H 0.06 -0.01 8.14 -2.39 -0.02 -0.03 16 22 H 0.05 -0.08 8.14 -2.39 -0.02 -0.10 16 23 H 0.06 -0.16 8.14 -2.39 -0.02 -0.18 16 24 H 0.09 0.12 8.14 -2.39 -0.02 0.10 16 25 H 0.07 0.07 8.14 -2.39 -0.02 0.05 16 26 H 0.42 -2.20 8.85 -92.70 -0.82 -3.02 16 27 H 0.18 0.51 8.06 -2.91 -0.02 0.48 16 28 H 0.12 0.07 7.96 -2.39 -0.02 0.06 16 29 H 0.40 -2.82 8.70 -74.06 -0.64 -3.46 16 30 H -0.27 -1.30 7.11 99.48 0.71 -0.60 16 31 H -0.27 -0.97 7.11 99.48 0.71 -0.26 16 32 H 0.09 -0.45 8.14 -2.39 -0.02 -0.47 16 33 H 0.10 -0.36 8.12 -2.39 -0.02 -0.38 16 Total: 0.00 -12.23 295.62 -1.83 -14.06 By element: Atomic # 1 Polarization: -8.25 SS G_CDS: -0.31 Total: -8.55 kcal Atomic # 6 Polarization: 1.29 SS G_CDS: 4.76 Total: 6.05 kcal Atomic # 7 Polarization: -3.21 SS G_CDS: -3.79 Total: -7.00 kcal Atomic # 8 Polarization: -1.29 SS G_CDS: -3.46 Total: -4.75 kcal Atomic # 14 Polarization: -0.79 SS G_CDS: 2.13 Total: 1.34 kcal Atomic # 16 Polarization: 0.01 SS G_CDS: -1.16 Total: -1.15 kcal Total: -12.23 -1.83 -14.06 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_10905470_15704118.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.775 kcal (2) G-P(sol) polarization free energy of solvation -12.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.060 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds