Wall clock time and date at job start Mon Mar 8 2021 06:21:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42896 * 109.47197 * 2 1 4 4 C 1.42903 * 114.00003 * 179.97438 * 3 2 1 5 5 H 1.09002 * 112.84956 * 18.81215 * 4 3 2 6 6 C 1.53784 * 113.61192 * 150.00352 * 4 3 2 7 7 C 1.53782 * 87.08139 * 139.98191 * 6 4 3 8 8 H 1.08999 * 113.60722 * 89.19904 * 7 6 4 9 9 N 1.46499 * 113.61410 * 220.01715 * 7 6 4 10 10 C 1.38609 * 119.99887 * 204.99943 * 9 7 6 11 11 N 1.29683 * 124.94801 * 180.02562 * 10 9 7 12 12 C 1.32124 * 116.86353 * 179.97438 * 11 10 9 13 13 C 1.50698 * 122.70945 * 179.97438 * 12 11 10 14 14 O 1.42903 * 109.46970 * 150.02269 * 13 12 11 15 15 Si 1.86307 * 109.46934 * 30.02933 * 13 12 11 16 16 C 1.33323 * 114.58053 * 0.02562 * 12 11 10 17 17 C 1.50705 * 125.95359 * 180.02562 * 16 12 11 18 18 S 1.70968 * 124.94876 * 359.97438 * 10 9 7 19 19 C 1.53773 * 113.61640 * 247.49980 * 4 3 2 20 20 H 1.08999 * 109.47294 * 59.99964 * 1 2 3 21 21 H 1.09005 * 109.47030 * 179.97438 * 1 2 3 22 22 H 1.08996 * 109.47194 * 299.99374 * 1 2 3 23 23 H 1.09005 * 109.47157 * 240.00032 * 2 1 3 24 24 H 1.08998 * 109.47031 * 120.00511 * 2 1 3 25 25 H 1.09002 * 113.61724 * 25.43421 * 6 4 3 26 26 H 1.09005 * 113.61537 * 254.53097 * 6 4 3 27 27 H 0.96995 * 119.99688 * 24.99984 * 9 7 6 28 28 H 1.08997 * 109.48033 * 270.03014 * 13 12 11 29 29 H 0.96690 * 114.00305 * 300.00242 * 14 13 12 30 30 H 1.48501 * 110.00162 * 58.67614 * 15 13 12 31 31 H 1.48498 * 110.00028 * 179.97438 * 15 13 12 32 32 H 1.08994 * 109.47703 * 179.97438 * 17 16 12 33 33 H 1.09000 * 109.46900 * 300.00245 * 17 16 12 34 34 H 1.09009 * 109.46914 * 59.99762 * 17 16 12 35 35 H 1.09000 * 113.61309 * 105.47452 * 19 4 3 36 36 H 1.09002 * 113.61683 * 334.57038 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4600 0.0006 5 1 3.9280 0.5456 -0.3230 6 6 3.9489 2.7251 -0.7039 7 6 4.9896 2.8314 0.4233 8 1 5.9144 2.2932 0.2156 9 7 5.2205 4.2037 0.8813 10 6 6.4265 4.5426 1.4746 11 7 6.7322 5.7237 1.9141 12 6 7.9297 5.8687 2.4532 13 6 8.4209 7.1824 3.0046 14 8 9.3365 6.9375 4.0741 15 14 6.9739 8.1692 3.6397 16 6 8.6688 4.7592 2.4690 17 6 10.0656 4.6343 3.0208 18 16 7.7273 3.4640 1.7347 19 6 4.0019 2.0464 1.3024 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5137 0.8900 23 1 1.8933 -0.5139 -0.8900 24 1 1.8933 -0.5139 0.8899 25 1 3.2304 3.5448 -0.7135 26 1 4.3849 2.5316 -1.6840 27 1 4.5295 4.8750 0.7694 28 1 8.9243 7.7420 2.2163 29 1 8.9557 6.4427 4.8124 30 1 6.2600 7.4036 4.6930 31 1 7.4450 9.4668 4.1868 32 1 10.4152 3.6095 2.8965 33 1 10.7298 5.3127 2.4852 34 1 10.0620 4.8906 4.0803 35 1 4.4807 1.3050 1.9421 36 1 3.2979 2.6805 1.8414 There are 47 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 47 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_10905470_15704122.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:21:41 Heat of formation + Delta-G solvation = 2.042814 kcal Electronic energy + Delta-G solvation = -18504.399374 eV Core-core repulsion = 15504.248002 eV Total energy + Delta-G solvation = -3000.151372 eV No. of doubly occupied orbitals = 47 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 271.103 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.18488 -40.60352 -38.24679 -37.58199 -35.05005 -32.57063 -31.69086 -29.32646 -26.82034 -25.86113 -25.18993 -24.04188 -23.59758 -21.53894 -20.28869 -19.25188 -18.18315 -17.83732 -17.34665 -16.75181 -16.59932 -16.45980 -15.84946 -15.76982 -15.35944 -14.58476 -14.32065 -14.28289 -13.90161 -13.75404 -13.54752 -13.53017 -13.44782 -12.96734 -12.77671 -12.52946 -12.40111 -12.18298 -12.01573 -11.88035 -11.76579 -10.96758 -10.67925 -10.56188 -10.41821 -10.06202 -8.63709 -4.80227 -0.04981 0.13315 0.70851 1.27727 1.65103 1.80283 1.87911 1.97624 2.81895 3.27204 3.36885 3.46517 3.50443 3.73564 3.79682 4.12475 4.16418 4.19059 4.30996 4.34774 4.49684 4.54000 4.61747 4.71614 4.79043 4.80970 4.84096 4.91721 4.94442 4.99430 5.02888 5.10072 5.26247 5.28884 5.66092 6.26606 6.32043 6.41406 6.90250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.050 3.950 3 O -0.394 6.394 4 C 0.063 3.937 5 H 0.111 0.889 6 C -0.134 4.134 7 C 0.131 3.869 8 H 0.119 0.881 9 N -0.675 5.675 10 C 0.310 3.690 11 N -0.559 5.559 12 C 0.055 3.945 13 C -0.039 4.039 14 O -0.532 6.532 15 Si 0.779 3.221 16 C -0.256 4.256 17 C -0.057 4.057 18 S 0.120 5.880 19 C -0.170 4.170 20 H 0.058 0.942 21 H 0.085 0.915 22 H 0.055 0.945 23 H 0.061 0.939 24 H 0.055 0.945 25 H 0.096 0.904 26 H 0.097 0.903 27 H 0.417 0.583 28 H 0.132 0.868 29 H 0.385 0.615 30 H -0.306 1.306 31 H -0.290 1.290 32 H 0.066 0.934 33 H 0.072 0.928 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.111 -5.027 -2.868 5.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.026 4.026 3 O -0.313 6.313 4 C 0.005 3.995 5 H 0.128 0.872 6 C -0.172 4.172 7 C 0.025 3.975 8 H 0.136 0.864 9 N -0.315 5.315 10 C -0.061 4.061 11 N -0.286 5.286 12 C -0.076 4.076 13 C -0.152 4.152 14 O -0.339 6.339 15 Si 0.685 3.315 16 C -0.379 4.379 17 C -0.117 4.117 18 S 0.369 5.631 19 C -0.209 4.209 20 H 0.077 0.923 21 H 0.104 0.896 22 H 0.074 0.926 23 H 0.079 0.921 24 H 0.073 0.927 25 H 0.114 0.886 26 H 0.115 0.885 27 H 0.257 0.743 28 H 0.150 0.850 29 H 0.234 0.766 30 H -0.234 1.234 31 H -0.218 1.218 32 H 0.085 0.915 33 H 0.091 0.909 34 H 0.103 0.897 35 H 0.101 0.899 36 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -1.456 -5.000 -2.904 5.963 hybrid contribution 0.401 0.145 1.142 1.219 sum -1.055 -4.855 -1.762 5.271 Atomic orbital electron populations 1.21783 0.93667 1.03161 1.02526 1.22672 0.95857 0.83103 1.00949 1.87940 1.21050 1.27717 1.94641 1.23522 0.81234 0.98639 0.96118 0.87164 1.23577 0.96831 0.98349 0.98485 1.22412 0.98362 0.80725 0.95958 0.86360 1.44030 1.12289 1.11975 1.63156 1.23566 0.93562 0.92165 0.96841 1.65734 1.19303 1.21125 1.22487 1.20214 0.89034 0.97476 1.00835 1.24462 1.02553 0.95366 0.92825 1.86595 1.38769 1.78206 1.30323 0.92883 0.78354 0.75788 0.84466 1.25386 1.04099 0.94968 1.13449 1.20159 0.88022 1.02018 1.01462 1.83754 1.06670 1.13372 1.59332 1.24081 0.98539 1.00185 0.98130 0.92335 0.89635 0.92624 0.92110 0.92653 0.88560 0.88490 0.74335 0.85025 0.76600 1.23394 1.21822 0.91530 0.90885 0.89652 0.89933 0.89606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.36 10.28 71.98 0.74 1.10 16 2 C 0.05 -0.12 6.50 71.98 0.47 0.35 16 3 O -0.39 -0.44 10.35 -148.98 -1.54 -1.99 16 4 C 0.06 -0.25 4.31 31.12 0.13 -0.11 16 5 H 0.11 -0.83 7.87 -2.39 -0.02 -0.85 16 6 C -0.13 0.70 7.66 31.12 0.24 0.94 16 7 C 0.13 -0.59 4.23 45.52 0.19 -0.40 16 8 H 0.12 -0.72 7.06 -2.39 -0.02 -0.73 16 9 N -0.67 0.66 5.51 -327.90 -1.81 -1.15 16 10 C 0.31 1.06 8.24 179.32 1.48 2.54 16 11 N -0.56 -3.49 8.95 -189.87 -1.70 -5.19 16 12 C 0.05 0.29 5.92 41.40 0.24 0.54 16 13 C -0.04 -0.13 2.94 71.24 0.21 0.08 16 14 O -0.53 -1.50 10.18 -148.98 -1.52 -3.01 16 15 Si 0.78 3.24 32.08 68.60 2.20 5.45 16 16 C -0.26 -0.98 6.50 24.58 0.16 -0.82 16 17 C -0.06 -0.03 8.91 71.24 0.63 0.61 16 18 S 0.12 0.17 21.69 -56.49 -1.23 -1.05 16 19 C -0.17 0.59 7.71 31.12 0.24 0.83 16 20 H 0.06 -0.07 8.14 -2.39 -0.02 -0.09 16 21 H 0.08 -0.45 8.14 -2.38 -0.02 -0.47 16 22 H 0.05 -0.04 8.14 -2.39 -0.02 -0.06 16 23 H 0.06 -0.28 8.14 -2.38 -0.02 -0.30 16 24 H 0.06 -0.21 8.14 -2.39 -0.02 -0.23 16 25 H 0.10 -0.37 8.12 -2.39 -0.02 -0.39 16 26 H 0.10 -0.71 8.14 -2.38 -0.02 -0.73 16 27 H 0.42 -0.86 8.85 -92.71 -0.82 -1.68 16 28 H 0.13 0.19 7.96 -2.39 -0.02 0.17 16 29 H 0.38 -0.69 8.13 -74.06 -0.60 -1.29 16 30 H -0.31 -3.24 7.11 99.48 0.71 -2.53 16 31 H -0.29 -2.59 7.11 99.48 0.71 -1.88 16 32 H 0.07 -0.09 8.14 -2.39 -0.02 -0.10 16 33 H 0.07 0.09 8.14 -2.39 -0.02 0.07 16 34 H 0.09 -0.08 6.40 -2.38 -0.02 -0.09 16 35 H 0.08 -0.36 8.14 -2.39 -0.02 -0.38 16 36 H 0.09 -0.03 8.14 -2.39 -0.02 -0.05 16 Total: 0.00 -11.77 311.97 -1.14 -12.91 By element: Atomic # 1 Polarization: -11.33 SS G_CDS: -0.29 Total: -11.62 kcal Atomic # 6 Polarization: 0.92 SS G_CDS: 4.74 Total: 5.66 kcal Atomic # 7 Polarization: -2.83 SS G_CDS: -3.51 Total: -6.33 kcal Atomic # 8 Polarization: -1.94 SS G_CDS: -3.06 Total: -5.00 kcal Atomic # 14 Polarization: 3.24 SS G_CDS: 2.20 Total: 5.45 kcal Atomic # 16 Polarization: 0.17 SS G_CDS: -1.23 Total: -1.05 kcal Total: -11.77 -1.14 -12.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_10905470_15704122.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.955 kcal (2) G-P(sol) polarization free energy of solvation -11.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -12.913 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds