Wall clock time and date at job start Mon Mar 8 2021 06:21:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42899 * 109.47173 * 2 1 4 4 C 1.42897 * 114.00053 * 180.02562 * 3 2 1 5 5 H 1.08992 * 112.90603 * 341.24677 * 4 3 2 6 6 C 1.53782 * 113.61360 * 112.50048 * 4 3 2 7 7 C 1.53780 * 87.08141 * 139.97631 * 6 4 3 8 8 H 1.09008 * 113.68948 * 89.12574 * 7 6 4 9 9 N 1.46492 * 113.61867 * 220.01567 * 7 6 4 10 10 C 1.39143 * 120.00234 * 252.50248 * 9 7 6 11 11 N 1.32339 * 119.71975 * 0.02562 * 10 9 7 12 12 C 1.32004 * 121.64689 * 179.97438 * 11 10 9 13 13 C 1.37985 * 120.90338 * 0.02562 * 12 11 10 14 14 C 1.50699 * 120.32490 * 179.97438 * 13 12 11 15 15 O 1.42907 * 109.47339 * 244.99991 * 14 13 12 16 16 Si 1.86298 * 109.47461 * 4.99962 * 14 13 12 17 17 C 1.38899 * 119.34704 * 0.02562 * 13 12 11 18 18 C 1.38450 * 118.48384 * 359.97438 * 17 13 12 19 19 F 1.35099 * 120.47056 * 180.02562 * 18 17 13 20 20 C 1.53782 * 87.08389 * 334.56734 * 7 6 4 21 21 H 1.09005 * 109.46942 * 180.02562 * 1 2 3 22 22 H 1.09004 * 109.47309 * 299.99971 * 1 2 3 23 23 H 1.08997 * 109.47474 * 60.00203 * 1 2 3 24 24 H 1.08997 * 109.46799 * 239.99564 * 2 1 3 25 25 H 1.08995 * 109.47011 * 119.99558 * 2 1 3 26 26 H 1.09005 * 113.61487 * 25.43331 * 6 4 3 27 27 H 1.08996 * 113.61609 * 254.52485 * 6 4 3 28 28 H 0.96998 * 120.00236 * 72.49700 * 9 7 6 29 29 H 1.08004 * 119.54865 * 180.28235 * 12 11 10 30 30 H 1.09001 * 109.47060 * 125.00258 * 14 13 12 31 31 H 0.96697 * 113.99409 * 59.99736 * 15 14 13 32 32 H 1.48505 * 109.99699 * 58.67820 * 16 14 13 33 33 H 1.48492 * 110.00220 * 179.97438 * 16 14 13 34 34 H 1.08001 * 120.75704 * 180.02562 * 17 13 12 35 35 H 1.09000 * 113.61486 * 139.97457 * 20 7 6 36 36 H 1.08995 * 113.61176 * 270.79707 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.9290 0.5458 0.3218 6 6 4.0018 2.0465 -1.3025 7 6 4.9895 2.8315 -0.4233 8 1 5.9145 2.2933 -0.2158 9 7 5.2204 4.2037 -0.8814 10 6 6.4310 4.5439 -1.4770 11 7 7.3698 3.6234 -1.6274 12 6 8.5317 3.9042 -2.1876 13 6 8.8113 5.1776 -2.6394 14 6 10.1423 5.4838 -3.2764 15 8 10.8603 6.4096 -2.4582 16 14 11.1266 3.9111 -3.4450 17 6 7.8544 6.1747 -2.5004 18 6 6.6449 5.8513 -1.9091 19 9 5.6855 6.7897 -1.7542 20 6 3.9489 2.7252 0.7039 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 1.8933 -0.5139 -0.8899 25 1 1.8933 -0.5137 0.8900 26 1 3.2978 2.6806 -1.8414 27 1 4.4807 1.3051 -1.9422 28 1 4.5294 4.8751 -0.7695 29 1 9.2720 3.1255 -2.2975 30 1 9.9815 5.9193 -4.2626 31 1 11.0391 6.0877 -1.5641 32 1 10.3764 2.9282 -4.2675 33 1 12.4412 4.1995 -4.0725 34 1 8.0490 7.1791 -2.8463 35 1 4.3849 2.5317 1.6839 36 1 3.2313 3.5456 0.7143 There are 49 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 49 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_10905470_17656566.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:21:44 Heat of formation + Delta-G solvation = -51.115364 kcal Electronic energy + Delta-G solvation = -20219.618668 eV Core-core repulsion = 16814.093582 eV Total energy + Delta-G solvation = -3405.525086 eV No. of doubly occupied orbitals = 49 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.85529 -41.49679 -40.50547 -38.24338 -37.56042 -35.19382 -33.19416 -31.96492 -31.04690 -26.90508 -26.72331 -25.62974 -24.09647 -23.64662 -22.84078 -21.01419 -19.23424 -18.82817 -18.32678 -17.80807 -17.44344 -16.95439 -16.69561 -16.48944 -16.11911 -15.96180 -15.64583 -15.36625 -14.84985 -14.60789 -14.32244 -14.07590 -13.92474 -13.55071 -13.53798 -13.47197 -12.94588 -12.64660 -12.48470 -12.15656 -12.09570 -11.95683 -11.83391 -11.21636 -10.69606 -10.65245 -10.46339 -10.42343 -8.75955 -5.10077 -0.06681 0.11930 1.21760 1.57749 1.91951 1.92968 2.54376 2.74282 3.05988 3.27720 3.41223 3.43454 3.50716 3.58651 3.79466 3.81282 3.83845 3.99581 4.11629 4.20978 4.35318 4.39311 4.41305 4.46061 4.64593 4.69257 4.70411 4.75490 4.89992 4.92990 4.97051 4.98209 5.06663 5.20107 5.42868 5.95236 6.17093 6.27784 6.52038 6.94492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.055 3.945 3 O -0.374 6.374 4 C 0.067 3.933 5 H 0.092 0.908 6 C -0.170 4.170 7 C 0.138 3.862 8 H 0.123 0.877 9 N -0.703 5.703 10 C 0.391 3.609 11 N -0.513 5.513 12 C 0.149 3.851 13 C -0.211 4.211 14 C -0.055 4.055 15 O -0.540 6.540 16 Si 0.684 3.316 17 C -0.037 4.037 18 C -0.020 4.020 19 F -0.133 7.133 20 C -0.146 4.146 21 H 0.072 0.928 22 H 0.063 0.937 23 H 0.063 0.937 24 H 0.049 0.951 25 H 0.050 0.950 26 H 0.092 0.908 27 H 0.075 0.925 28 H 0.414 0.586 29 H 0.163 0.837 30 H 0.115 0.885 31 H 0.380 0.620 32 H -0.254 1.254 33 H -0.251 1.251 34 H 0.149 0.851 35 H 0.082 0.918 36 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.770 -3.334 2.314 4.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.021 4.021 3 O -0.292 6.292 4 C 0.008 3.992 5 H 0.110 0.890 6 C -0.209 4.209 7 C 0.032 3.968 8 H 0.141 0.859 9 N -0.335 5.335 10 C 0.153 3.847 11 N -0.229 5.229 12 C -0.008 4.008 13 C -0.216 4.216 14 C -0.166 4.166 15 O -0.346 6.346 16 Si 0.586 3.414 17 C -0.063 4.063 18 C -0.047 4.047 19 F -0.112 7.112 20 C -0.185 4.185 21 H 0.090 0.910 22 H 0.082 0.918 23 H 0.082 0.918 24 H 0.067 0.933 25 H 0.068 0.932 26 H 0.110 0.890 27 H 0.094 0.906 28 H 0.251 0.749 29 H 0.180 0.820 30 H 0.132 0.868 31 H 0.227 0.773 32 H -0.179 1.179 33 H -0.176 1.176 34 H 0.167 0.833 35 H 0.100 0.900 36 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 0.771 -4.375 1.585 4.716 hybrid contribution -0.644 1.493 -0.541 1.714 sum 0.127 -2.881 1.044 3.067 Atomic orbital electron populations 1.21762 0.93603 1.02477 1.03209 1.22544 0.95776 0.83643 1.00142 1.87957 1.20095 1.26639 1.94558 1.23376 0.81650 0.97696 0.96495 0.88980 1.24061 0.98730 1.00330 0.97819 1.22203 0.98012 0.82188 0.94355 0.85887 1.44535 1.13500 1.11922 1.63564 1.18452 0.87995 0.87467 0.90775 1.67262 1.01917 1.33419 1.20342 1.22308 0.92540 0.94462 0.91498 1.20922 0.98761 0.94509 1.07400 1.24860 0.91556 1.04115 0.96109 1.86518 1.75937 1.43949 1.28150 0.94899 0.79938 0.76736 0.89840 1.21287 0.89979 1.00909 0.94160 1.18005 0.89617 0.86366 1.10676 1.91495 1.61868 1.63552 1.94301 1.23658 0.97714 0.98538 0.98557 0.90952 0.91787 0.91822 0.93265 0.93205 0.88965 0.90624 0.74870 0.82029 0.86758 0.77300 1.17864 1.17609 0.83331 0.89956 0.88636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.09 10.28 37.16 0.38 0.47 16 2 C 0.06 -0.01 6.50 37.16 0.24 0.23 16 3 O -0.37 -0.61 10.35 -35.23 -0.36 -0.98 16 4 C 0.07 -0.03 4.31 -25.91 -0.11 -0.14 16 5 H 0.09 -0.16 7.87 -51.93 -0.41 -0.57 16 6 C -0.17 0.03 7.71 -25.92 -0.20 -0.17 16 7 C 0.14 -0.07 4.27 -67.12 -0.29 -0.36 16 8 H 0.12 -0.04 7.41 -51.92 -0.38 -0.43 16 9 N -0.70 -0.24 5.51 -53.06 -0.29 -0.54 16 10 C 0.39 0.65 7.49 -154.86 -1.16 -0.51 16 11 N -0.51 -0.74 9.13 -12.36 -0.11 -0.85 16 12 C 0.15 -0.04 9.84 -17.57 -0.17 -0.21 16 13 C -0.21 0.06 5.36 -104.47 -0.56 -0.50 16 14 C -0.05 0.06 2.82 36.01 0.10 0.16 16 15 O -0.54 0.28 12.84 -35.23 -0.45 -0.18 16 16 Si 0.68 -1.37 29.83 -169.99 -5.07 -6.44 16 17 C -0.04 -0.03 9.82 -39.26 -0.39 -0.41 16 18 C -0.02 -0.04 7.35 -39.09 -0.29 -0.32 16 19 F -0.13 -0.34 16.65 2.25 0.04 -0.30 16 20 C -0.15 0.15 7.66 -25.91 -0.20 -0.05 16 21 H 0.07 -0.13 8.14 -51.93 -0.42 -0.56 16 22 H 0.06 -0.01 8.14 -51.93 -0.42 -0.43 16 23 H 0.06 0.00 8.14 -51.93 -0.42 -0.43 16 24 H 0.05 -0.04 8.14 -51.93 -0.42 -0.46 16 25 H 0.05 -0.05 8.14 -51.93 -0.42 -0.48 16 26 H 0.09 0.09 8.14 -51.93 -0.42 -0.34 16 27 H 0.08 -0.01 8.14 -51.93 -0.42 -0.44 16 28 H 0.41 -0.18 8.20 -40.82 -0.33 -0.51 16 29 H 0.16 -0.45 4.90 -52.48 -0.26 -0.71 16 30 H 0.12 -0.08 7.96 -51.93 -0.41 -0.50 16 31 H 0.38 -1.65 8.70 45.56 0.40 -1.25 16 32 H -0.25 -0.08 7.11 56.52 0.40 0.32 16 33 H -0.25 -0.34 7.11 56.52 0.40 0.06 16 34 H 0.15 -0.01 8.06 -52.49 -0.42 -0.43 16 35 H 0.08 -0.14 8.14 -51.93 -0.42 -0.57 16 36 H 0.10 -0.06 8.12 -51.93 -0.42 -0.48 16 LS Contribution 308.28 15.07 4.65 4.65 Total: 0.00 -5.57 308.28 -9.07 -14.64 By element: Atomic # 1 Polarization: -3.36 SS G_CDS: -4.83 Total: -8.19 kcal Atomic # 6 Polarization: 0.82 SS G_CDS: -2.64 Total: -1.82 kcal Atomic # 7 Polarization: -0.98 SS G_CDS: -0.41 Total: -1.39 kcal Atomic # 8 Polarization: -0.34 SS G_CDS: -0.82 Total: -1.16 kcal Atomic # 9 Polarization: -0.34 SS G_CDS: 0.04 Total: -0.30 kcal Atomic # 14 Polarization: -1.37 SS G_CDS: -5.07 Total: -6.44 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -5.57 -9.07 -14.64 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_10905470_17656566.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.473 kcal (2) G-P(sol) polarization free energy of solvation -5.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds