Wall clock time and date at job start Mon Mar 8 2021 06:44:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34225 * 116.99814 * 2 1 4 4 O 1.20826 * 120.00428 * 359.97438 * 3 2 1 5 5 C 1.50701 * 120.00010 * 179.97438 * 3 2 1 6 6 H 1.09003 * 112.85214 * 48.80465 * 5 3 2 7 7 C 1.53787 * 113.61790 * 179.97438 * 5 3 2 8 8 C 1.53781 * 87.07987 * 140.06564 * 7 5 3 9 9 H 1.09002 * 113.61228 * 89.11929 * 8 7 5 10 10 N 1.46500 * 113.61339 * 219.93875 * 8 7 5 11 11 C 1.38411 * 119.99932 * 203.47668 * 10 8 7 12 12 N 1.32488 * 119.21541 * 359.72504 * 11 10 8 13 13 C 1.32283 * 120.73756 * 179.72280 * 12 11 10 14 14 C 1.38599 * 119.19800 * 0.54052 * 13 12 11 15 15 C 1.50694 * 120.72402 * 179.75424 * 14 13 12 16 16 O 1.42905 * 109.47476 * 244.98431 * 15 14 13 17 17 Si 1.86304 * 109.46982 * 4.97752 * 15 14 13 18 18 C 1.38603 * 118.55832 * 359.73444 * 14 13 12 19 19 N 1.32276 * 119.19573 * 0.02562 * 18 14 13 20 20 C 1.53779 * 113.69072 * 277.53760 * 5 3 2 21 21 H 1.08999 * 109.46669 * 60.00348 * 1 2 3 22 22 H 1.08999 * 109.46772 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47495 * 300.00417 * 1 2 3 24 24 H 1.09005 * 113.61051 * 25.51968 * 7 5 3 25 25 H 1.08993 * 113.61359 * 254.62005 * 7 5 3 26 26 H 0.96998 * 120.00149 * 23.46564 * 10 8 7 27 27 H 1.08003 * 120.39885 * 180.25481 * 13 12 11 28 28 H 1.08994 * 109.47349 * 124.97856 * 15 14 13 29 29 H 0.96695 * 114.00560 * 179.97438 * 16 15 14 30 30 H 1.48507 * 110.00163 * 178.67889 * 17 15 14 31 31 H 1.48501 * 110.00295 * 300.00441 * 17 15 14 32 32 H 1.08003 * 120.40482 * 179.97438 * 18 14 13 33 33 H 1.09003 * 113.61775 * 105.46356 * 20 5 3 34 34 H 1.08996 * 113.61960 * 334.55082 * 20 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 1 4.0240 0.6362 -0.7549 7 6 4.1078 2.7143 -0.0001 8 6 5.1820 2.2270 0.9865 9 1 6.0813 1.8482 0.5008 10 7 5.4734 3.1841 2.0566 11 6 6.6928 3.1414 2.7102 12 7 7.5828 2.2249 2.3592 13 6 8.7596 2.1603 2.9599 14 6 9.0511 3.0586 3.9743 15 6 10.3788 3.0124 4.6856 16 8 10.1733 2.6629 6.0559 17 14 11.4723 1.7388 3.8774 18 6 8.0951 4.0007 4.3201 19 7 6.9398 4.0140 3.6760 20 6 4.1924 1.1231 1.3969 21 1 -0.3632 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 3.4177 3.4406 0.4294 25 1 4.5098 3.0290 -0.9631 26 1 4.8120 3.8479 2.3070 27 1 9.4827 1.4136 2.6666 28 1 10.8563 3.9905 4.6278 29 1 10.9871 2.6139 6.5758 30 1 12.7962 1.7059 4.5495 31 1 10.8325 0.4007 3.9495 32 1 8.2907 4.7147 5.1065 33 1 4.6631 0.1537 1.5614 34 1 3.5257 1.4142 2.2085 There are 48 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 48 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_10970306_12175864.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:44:45 Heat of formation + Delta-G solvation = -20.604438 kcal Electronic energy + Delta-G solvation = -19537.782764 eV Core-core repulsion = 16246.238082 eV Total energy + Delta-G solvation = -3291.544682 eV No. of doubly occupied orbitals = 48 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.18838 -41.80103 -39.79288 -38.03401 -37.49298 -35.62168 -34.72666 -32.31808 -29.37979 -27.33994 -26.83980 -26.10710 -25.66356 -23.21648 -22.25669 -20.79040 -19.36024 -19.16211 -18.57996 -18.35236 -17.69825 -17.43059 -16.66895 -16.40988 -16.02172 -15.91489 -15.61649 -15.28164 -14.58899 -14.55819 -14.32408 -13.94057 -13.73655 -13.57553 -13.30216 -13.06857 -12.46890 -12.38518 -12.18420 -12.00906 -11.89596 -11.86991 -11.68543 -11.42607 -11.16926 -10.64256 -10.02397 -9.12077 -4.89246 0.04271 0.13614 1.04734 1.33069 1.58674 1.63295 1.94366 1.98713 2.73184 3.13941 3.26130 3.33926 3.42605 3.64817 3.68645 3.69899 3.82054 3.92067 4.02824 4.18223 4.24010 4.26202 4.52113 4.57398 4.59406 4.63251 4.66354 4.77910 4.85059 4.92986 5.06470 5.31287 5.34853 5.76842 6.00388 6.37135 6.63264 6.64985 7.24682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.363 6.363 3 C 0.470 3.530 4 O -0.539 6.539 5 C -0.102 4.102 6 H 0.158 0.842 7 C -0.122 4.122 8 C 0.147 3.853 9 H 0.134 0.866 10 N -0.683 5.683 11 C 0.552 3.448 12 N -0.571 5.571 13 C 0.193 3.807 14 C -0.247 4.247 15 C -0.061 4.061 16 O -0.560 6.560 17 Si 0.758 3.242 18 C 0.211 3.789 19 N -0.592 5.592 20 C -0.132 4.132 21 H 0.062 0.938 22 H 0.128 0.872 23 H 0.059 0.941 24 H 0.089 0.911 25 H 0.104 0.896 26 H 0.417 0.583 27 H 0.187 0.813 28 H 0.102 0.898 29 H 0.397 0.603 30 H -0.283 1.283 31 H -0.294 1.294 32 H 0.183 0.817 33 H 0.097 0.903 34 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.190 -1.224 -2.312 4.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.279 6.279 3 C 0.314 3.686 4 O -0.429 6.429 5 C -0.121 4.121 6 H 0.176 0.824 7 C -0.161 4.161 8 C 0.041 3.959 9 H 0.151 0.849 10 N -0.318 5.318 11 C 0.195 3.805 12 N -0.293 5.293 13 C 0.026 3.974 14 C -0.255 4.255 15 C -0.171 4.171 16 O -0.371 6.371 17 Si 0.663 3.337 18 C 0.044 3.956 19 N -0.314 5.314 20 C -0.172 4.172 21 H 0.081 0.919 22 H 0.146 0.854 23 H 0.077 0.923 24 H 0.107 0.893 25 H 0.122 0.878 26 H 0.255 0.745 27 H 0.203 0.797 28 H 0.120 0.880 29 H 0.248 0.752 30 H -0.210 1.210 31 H -0.221 1.221 32 H 0.200 0.800 33 H 0.115 0.885 34 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 2.841 -1.771 -3.032 4.517 hybrid contribution 0.111 0.421 1.988 2.036 sum 2.952 -1.350 -1.043 3.409 Atomic orbital electron populations 1.23520 0.75127 1.05589 1.02392 1.86521 1.24697 1.33181 1.83477 1.24072 0.92669 0.80970 0.70880 1.90669 1.67969 1.37456 1.46817 1.22427 0.85695 1.01568 1.02392 0.82399 1.23361 0.96675 0.94634 1.01389 1.22503 0.97906 0.88600 0.86879 0.84878 1.44238 1.12732 1.37388 1.37454 1.19653 0.87743 0.86151 0.86907 1.67942 1.03874 1.24708 1.32787 1.23175 0.91675 0.93738 0.88822 1.20825 0.99916 1.01941 1.02841 1.24614 0.98154 1.08984 0.85380 1.86545 1.37622 1.92373 1.20542 0.94334 0.74696 0.75893 0.88822 1.23157 0.85491 0.93873 0.93060 1.67989 1.24056 1.27800 1.11587 1.23471 0.97830 1.01633 0.94235 0.91915 0.85360 0.92267 0.89271 0.87780 0.74461 0.79696 0.88015 0.75231 1.20999 1.22138 0.79981 0.88491 0.90434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.01 10.56 113.37 1.20 1.19 16 2 O -0.36 -1.20 10.57 -51.37 -0.54 -1.75 16 3 C 0.47 1.97 7.49 71.24 0.53 2.51 16 4 O -0.54 -5.68 15.65 21.97 0.34 -5.33 16 5 C -0.10 0.27 4.25 -11.01 -0.05 0.22 16 6 H 0.16 -1.23 8.14 -2.39 -0.02 -1.25 16 7 C -0.12 0.34 7.15 31.12 0.22 0.56 16 8 C 0.15 -0.28 4.22 45.53 0.19 -0.09 16 9 H 0.13 -0.35 7.41 -2.39 -0.02 -0.37 16 10 N -0.68 -1.37 5.51 -327.86 -1.81 -3.18 16 11 C 0.55 3.38 8.43 261.49 2.20 5.59 16 12 N -0.57 -2.76 9.15 -197.99 -1.81 -4.58 16 13 C 0.19 0.32 9.92 84.71 0.84 1.16 16 14 C -0.25 -0.31 5.40 -19.69 -0.11 -0.42 16 15 C -0.06 0.21 2.82 71.23 0.20 0.41 16 16 O -0.56 0.22 12.82 -148.98 -1.91 -1.69 16 17 Si 0.76 -3.62 29.92 68.60 2.05 -1.57 16 18 C 0.21 0.76 10.99 84.71 0.93 1.69 16 19 N -0.59 -4.31 10.46 -197.99 -2.07 -6.38 16 20 C -0.13 0.26 7.44 31.13 0.23 0.49 16 21 H 0.06 0.00 8.13 -2.39 -0.02 -0.02 16 22 H 0.13 -0.76 8.14 -2.39 -0.02 -0.78 16 23 H 0.06 0.03 8.13 -2.39 -0.02 0.01 16 24 H 0.09 0.05 7.41 -2.38 -0.02 0.03 16 25 H 0.10 -0.56 8.14 -2.39 -0.02 -0.58 16 26 H 0.42 0.45 8.83 -92.71 -0.82 -0.37 16 27 H 0.19 -0.65 5.04 -2.91 -0.01 -0.67 16 28 H 0.10 -0.81 7.96 -2.39 -0.02 -0.83 16 29 H 0.40 -3.32 8.74 -74.06 -0.65 -3.97 16 30 H -0.28 0.12 7.11 99.48 0.71 0.83 16 31 H -0.29 -0.65 7.06 99.48 0.70 0.06 16 32 H 0.18 -0.13 8.06 -2.91 -0.02 -0.16 16 33 H 0.10 -0.30 8.14 -2.39 -0.02 -0.32 16 34 H 0.08 0.07 8.10 -2.39 -0.02 0.05 16 Total: 0.00 -19.90 297.29 0.37 -19.53 By element: Atomic # 1 Polarization: -8.07 SS G_CDS: -0.28 Total: -8.35 kcal Atomic # 6 Polarization: 6.90 SS G_CDS: 6.40 Total: 13.30 kcal Atomic # 7 Polarization: -8.45 SS G_CDS: -5.69 Total: -14.14 kcal Atomic # 8 Polarization: -6.66 SS G_CDS: -2.11 Total: -8.77 kcal Atomic # 14 Polarization: -3.62 SS G_CDS: 2.05 Total: -1.57 kcal Total: -19.90 0.37 -19.53 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_10970306_12175864.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.074 kcal (2) G-P(sol) polarization free energy of solvation -19.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds