Wall clock time and date at job start Mon Mar 8 2021 06:44:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45208 * 1 3 3 C 1.34224 * 116.99764 * 2 1 4 4 O 1.20827 * 120.00384 * 0.02562 * 3 2 1 5 5 C 1.50705 * 119.99776 * 180.02562 * 3 2 1 6 6 H 1.09002 * 112.84622 * 311.20109 * 5 3 2 7 7 C 1.53778 * 113.61536 * 82.50353 * 5 3 2 8 8 C 1.53777 * 87.08140 * 139.98260 * 7 5 3 9 9 H 1.09004 * 113.69029 * 89.12824 * 8 7 5 10 10 N 1.46495 * 113.61468 * 220.01872 * 8 7 5 11 11 C 1.39009 * 120.00247 * 252.49775 * 10 8 7 12 12 N 1.32390 * 119.70643 * 179.97438 * 11 10 8 13 13 C 1.31974 * 121.62134 * 179.97438 * 12 11 10 14 14 C 1.38025 * 120.85781 * 0.02562 * 13 12 11 15 15 C 1.50701 * 120.33454 * 180.02562 * 14 13 12 16 16 O 1.42904 * 109.46728 * 244.99353 * 15 14 13 17 17 Si 1.86294 * 109.47190 * 4.99619 * 15 14 13 18 18 C 1.38885 * 119.32533 * 359.97438 * 14 13 12 19 19 C 1.38298 * 118.50933 * 0.02562 * 18 14 13 20 20 C 1.53774 * 87.08056 * 334.56792 * 8 7 5 21 21 H 1.08996 * 109.47123 * 179.97438 * 1 2 3 22 22 H 1.08999 * 109.46724 * 300.00229 * 1 2 3 23 23 H 1.09002 * 109.46865 * 59.99802 * 1 2 3 24 24 H 1.08995 * 113.61463 * 25.43231 * 7 5 3 25 25 H 1.09003 * 113.61600 * 254.53512 * 7 5 3 26 26 H 0.97000 * 120.00156 * 72.49523 * 10 8 7 27 27 H 1.08006 * 119.57174 * 179.72360 * 13 12 11 28 28 H 1.08996 * 109.46780 * 124.99856 * 15 14 13 29 29 H 0.96700 * 113.99745 * 60.00034 * 16 15 14 30 30 H 1.48498 * 109.99931 * 179.97438 * 17 15 14 31 31 H 1.48500 * 110.00264 * 301.31985 * 17 15 14 32 32 H 1.08000 * 120.74166 * 180.02562 * 18 14 13 33 33 H 1.07994 * 120.45391 * 179.97438 * 19 18 14 34 34 H 1.09006 * 113.61494 * 139.98462 * 20 8 7 35 35 H 1.09003 * 113.61933 * 270.88168 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 -0.0006 6 1 4.0239 0.6361 0.7549 7 6 4.1906 1.1238 -1.3978 8 6 5.1807 2.2270 -0.9886 9 1 6.0813 1.8495 -0.5042 10 7 5.4694 3.1834 -2.0600 11 6 6.7047 3.1616 -2.6970 12 7 6.9592 4.0283 -3.6649 13 6 8.1189 4.0415 -4.2946 14 6 9.1145 3.1447 -3.9636 15 6 10.4346 3.1707 -4.6901 16 8 10.5986 1.9553 -5.4236 17 14 10.4680 4.6152 -5.8660 18 6 8.8877 2.2188 -2.9536 19 6 7.6627 2.2290 -2.3117 20 6 4.1078 2.7141 -0.0005 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 3.5227 1.4153 -2.2083 25 1 4.6609 0.1545 -1.5635 26 1 4.7985 3.8319 -2.3250 27 1 8.2894 4.7603 -5.0825 28 1 11.2447 3.2713 -3.9678 29 1 9.9114 1.7999 -6.0859 30 1 11.7650 4.6524 -6.5882 31 1 9.3489 4.5064 -6.8361 32 1 9.6508 1.5069 -2.6757 33 1 7.4526 1.5228 -1.5222 34 1 4.5113 3.0288 0.9620 35 1 3.4172 3.4405 -0.4289 There are 48 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 48 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_10970306_13915762.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:44:47 Heat of formation + Delta-G solvation = -38.516757 kcal Electronic energy + Delta-G solvation = -19409.723126 eV Core-core repulsion = 16182.827618 eV Total energy + Delta-G solvation = -3226.895508 eV No. of doubly occupied orbitals = 48 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 265.115 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.99285 -41.33161 -39.74415 -38.00534 -37.47933 -35.35839 -33.38578 -31.34075 -29.33029 -27.19878 -26.82337 -25.80738 -24.81209 -23.03294 -21.94086 -20.66930 -19.12675 -18.62951 -18.48885 -17.96025 -17.47337 -17.15787 -16.51022 -16.34849 -16.17428 -15.59731 -15.32893 -15.19853 -14.51971 -14.38564 -14.23481 -13.99015 -13.67810 -13.53707 -13.35419 -13.03774 -12.52154 -12.42459 -12.17668 -12.02321 -11.91026 -11.87238 -11.42168 -11.05586 -10.75317 -10.52649 -10.37246 -8.69933 -4.90194 0.24354 0.43273 1.05303 1.34990 1.60619 1.65156 1.96849 2.19410 2.82273 3.26303 3.34197 3.47496 3.59747 3.68669 3.74397 3.80761 3.98942 4.04589 4.12383 4.23576 4.25444 4.38163 4.43905 4.59654 4.63793 4.65204 4.66220 4.80135 4.86428 4.93949 5.02323 5.13785 5.32353 5.36054 5.57128 6.04301 6.50964 6.52471 6.63479 7.15975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.362 6.362 3 C 0.467 3.533 4 O -0.542 6.542 5 C -0.104 4.104 6 H 0.161 0.839 7 C -0.134 4.134 8 C 0.139 3.861 9 H 0.141 0.859 10 N -0.711 5.711 11 C 0.394 3.606 12 N -0.569 5.569 13 C 0.142 3.858 14 C -0.233 4.233 15 C -0.060 4.060 16 O -0.549 6.549 17 Si 0.753 3.247 18 C -0.011 4.011 19 C -0.237 4.237 20 C -0.126 4.126 21 H 0.129 0.871 22 H 0.061 0.939 23 H 0.058 0.942 24 H 0.075 0.925 25 H 0.105 0.895 26 H 0.404 0.596 27 H 0.162 0.838 28 H 0.127 0.873 29 H 0.384 0.616 30 H -0.301 1.301 31 H -0.286 1.286 32 H 0.149 0.851 33 H 0.159 0.841 34 H 0.102 0.898 35 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.743 -2.594 3.563 4.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.278 6.278 3 C 0.312 3.688 4 O -0.432 6.432 5 C -0.123 4.123 6 H 0.178 0.822 7 C -0.173 4.173 8 C 0.033 3.967 9 H 0.159 0.841 10 N -0.342 5.342 11 C 0.158 3.842 12 N -0.287 5.287 13 C -0.015 4.015 14 C -0.238 4.238 15 C -0.171 4.171 16 O -0.356 6.356 17 Si 0.659 3.341 18 C -0.037 4.037 19 C -0.262 4.262 20 C -0.164 4.164 21 H 0.147 0.853 22 H 0.080 0.920 23 H 0.077 0.923 24 H 0.094 0.906 25 H 0.123 0.877 26 H 0.240 0.760 27 H 0.179 0.821 28 H 0.145 0.855 29 H 0.233 0.767 30 H -0.229 1.229 31 H -0.213 1.213 32 H 0.167 0.833 33 H 0.176 0.824 34 H 0.121 0.879 35 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 0.424 -1.643 3.043 3.484 hybrid contribution -0.690 -1.103 -0.591 1.429 sum -0.266 -2.746 2.452 3.691 Atomic orbital electron populations 1.23513 0.75208 1.05580 1.02325 1.86518 1.24622 1.33209 1.83487 1.24178 0.92879 0.80924 0.70842 1.90676 1.68066 1.37559 1.46868 1.22486 0.85514 1.01566 1.02728 0.82157 1.23517 0.98024 1.01815 0.93950 1.22596 0.98048 0.88883 0.87129 0.84133 1.44614 1.12893 1.38466 1.38190 1.18707 0.87059 0.89772 0.88642 1.67142 1.23648 1.26489 1.11381 1.22459 0.87174 0.95735 0.96109 1.20958 0.98523 1.01479 1.02843 1.24855 0.96588 0.95291 1.00344 1.86566 1.54442 1.40187 1.54446 0.94208 0.76264 0.83631 0.79991 1.21445 0.96097 0.94963 0.91164 1.21726 0.94541 1.03607 1.06288 1.23356 0.96972 0.94610 1.01474 0.85332 0.92014 0.92331 0.90617 0.87653 0.75961 0.82088 0.85489 0.76670 1.22873 1.21253 0.83281 0.82386 0.87907 0.89805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.04 10.56 113.37 1.20 1.16 16 2 O -0.36 -0.69 10.57 -51.36 -0.54 -1.23 16 3 C 0.47 1.27 7.48 71.24 0.53 1.80 16 4 O -0.54 -5.25 15.65 21.96 0.34 -4.90 16 5 C -0.10 0.55 4.26 -11.01 -0.05 0.51 16 6 H 0.16 -1.77 8.14 -2.39 -0.02 -1.79 16 7 C -0.13 0.80 7.43 31.12 0.23 1.03 16 8 C 0.14 -0.92 4.03 45.51 0.18 -0.74 16 9 H 0.14 -1.54 6.10 -2.39 -0.01 -1.56 16 10 N -0.71 0.95 5.53 -322.07 -1.78 -0.83 16 11 C 0.39 0.84 7.65 133.06 1.02 1.86 16 12 N -0.57 -3.21 10.39 -193.25 -2.01 -5.22 16 13 C 0.14 0.35 9.84 84.62 0.83 1.18 16 14 C -0.23 -0.04 5.36 -19.76 -0.11 -0.15 16 15 C -0.06 0.07 2.82 71.24 0.20 0.27 16 16 O -0.55 -0.98 12.84 -148.98 -1.91 -2.89 16 17 Si 0.75 -1.07 29.91 68.60 2.05 0.98 16 18 C -0.01 0.01 9.84 22.44 0.22 0.23 16 19 C -0.24 0.37 9.29 22.50 0.21 0.58 16 20 C -0.13 0.64 7.16 31.12 0.22 0.86 16 21 H 0.13 -0.88 8.14 -2.39 -0.02 -0.90 16 22 H 0.06 -0.04 8.13 -2.39 -0.02 -0.06 16 23 H 0.06 -0.02 8.13 -2.39 -0.02 -0.03 16 24 H 0.08 -0.15 8.09 -2.39 -0.02 -0.17 16 25 H 0.10 -0.93 8.14 -2.39 -0.02 -0.95 16 26 H 0.40 -0.07 8.85 -92.71 -0.82 -0.90 16 27 H 0.16 -0.09 4.85 -2.91 -0.01 -0.11 16 28 H 0.13 -0.43 7.96 -2.39 -0.02 -0.45 16 29 H 0.38 -1.19 8.70 -74.06 -0.64 -1.83 16 30 H -0.30 -1.83 7.11 99.48 0.71 -1.12 16 31 H -0.29 -0.83 7.01 99.48 0.70 -0.13 16 32 H 0.15 -0.60 8.06 -2.91 -0.02 -0.62 16 33 H 0.16 -1.15 6.03 -2.91 -0.02 -1.17 16 34 H 0.10 -0.77 8.14 -2.38 -0.02 -0.79 16 35 H 0.08 -0.03 7.41 -2.39 -0.02 -0.05 16 Total: 0.00 -18.68 299.59 0.54 -18.14 By element: Atomic # 1 Polarization: -12.33 SS G_CDS: -0.30 Total: -12.63 kcal Atomic # 6 Polarization: 3.89 SS G_CDS: 4.69 Total: 8.59 kcal Atomic # 7 Polarization: -2.26 SS G_CDS: -3.79 Total: -6.05 kcal Atomic # 8 Polarization: -6.91 SS G_CDS: -2.11 Total: -9.03 kcal Atomic # 14 Polarization: -1.07 SS G_CDS: 2.05 Total: 0.98 kcal Total: -18.68 0.54 -18.14 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_10970306_13915762.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.377 kcal (2) G-P(sol) polarization free energy of solvation -18.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds