Wall clock time and date at job start Mon Mar 8 2021 06:44:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45208 * 1 3 3 C 1.34228 * 116.99458 * 2 1 4 4 O 1.20829 * 120.00469 * 359.97438 * 3 2 1 5 5 C 1.50706 * 120.00120 * 179.97438 * 3 2 1 6 6 H 1.09003 * 112.84193 * 311.19981 * 5 3 2 7 7 C 1.53955 * 113.66694 * 82.43663 * 5 3 2 8 8 C 1.53779 * 87.01756 * 139.93620 * 7 5 3 9 9 H 1.09000 * 113.60922 * 89.23471 * 8 7 5 10 10 N 1.46499 * 113.61334 * 220.04779 * 8 7 5 11 11 C 1.38615 * 120.00055 * 254.13964 * 10 8 7 12 12 N 1.29681 * 124.94756 * 0.02562 * 11 10 8 13 13 C 1.32123 * 116.86476 * 179.97438 * 12 11 10 14 14 C 1.33330 * 114.58096 * 0.02562 * 13 12 11 15 15 C 1.50697 * 125.95409 * 179.97438 * 14 13 12 16 16 O 1.42904 * 109.46844 * 64.99365 * 15 14 13 17 17 Si 1.86296 * 109.47044 * 184.99590 * 15 14 13 18 18 S 1.70962 * 124.94647 * 179.72208 * 11 10 8 19 19 C 1.53773 * 113.61883 * 179.97438 * 5 3 2 20 20 H 1.09001 * 109.46435 * 179.97438 * 1 2 3 21 21 H 1.08997 * 109.47359 * 299.99607 * 1 2 3 22 22 H 1.08997 * 109.47138 * 60.00570 * 1 2 3 23 23 H 1.09001 * 113.61031 * 25.41220 * 7 5 3 24 24 H 1.09000 * 113.66629 * 254.47019 * 7 5 3 25 25 H 0.97004 * 120.00244 * 74.41355 * 10 8 7 26 26 H 1.08000 * 122.71073 * 180.02562 * 13 12 11 27 27 H 1.08996 * 109.47153 * 304.99984 * 15 14 13 28 28 H 0.96704 * 114.00031 * 60.00577 * 16 15 14 29 29 H 1.48505 * 109.99897 * 180.02562 * 17 15 14 30 30 H 1.48505 * 109.99965 * 301.31527 * 17 15 14 31 31 H 1.08995 * 113.61437 * 105.46974 * 19 5 3 32 32 H 1.09009 * 113.61268 * 334.56648 * 19 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2751 0.0006 6 1 4.0233 0.6367 0.7567 7 6 4.1938 1.1219 -1.3969 8 6 5.1814 2.2269 -0.9865 9 1 6.0816 1.8496 -0.5013 10 7 5.4708 3.1829 -2.0582 11 6 6.6913 3.1403 -2.7140 12 7 7.6430 2.2974 -2.4582 13 6 8.7426 2.4003 -3.1835 14 6 8.7180 3.3750 -4.0929 15 6 9.8285 3.7187 -5.0518 16 8 10.0298 2.6313 -5.9569 17 14 9.3695 5.2483 -6.0111 18 16 7.1583 4.1867 -3.9828 19 6 4.1077 2.7144 -0.0001 20 1 -0.3632 -1.0277 -0.0005 21 1 -0.3634 0.5137 0.8900 22 1 -0.3633 0.5137 -0.8900 23 1 3.5270 1.4117 -2.2090 24 1 4.6658 0.1531 -1.5608 25 1 4.8099 3.8482 -2.3062 26 1 9.5926 1.7475 -3.0506 27 1 10.7468 3.9016 -4.4938 28 1 9.2518 2.4124 -6.4880 29 1 10.4564 5.5974 -6.9609 30 1 8.1020 5.0224 -6.7513 31 1 4.5103 3.0299 0.9623 32 1 3.4173 3.4403 -0.4298 There are 46 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 46 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_10970306_15704118.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:44:49 Heat of formation + Delta-G solvation = -32.052409 kcal Electronic energy + Delta-G solvation = -18042.580485 eV Core-core repulsion = 14905.117539 eV Total energy + Delta-G solvation = -3137.462946 eV No. of doubly occupied orbitals = 46 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 271.071 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.94510 -40.78180 -39.65924 -37.99508 -37.47931 -35.28850 -31.32694 -29.40981 -27.33472 -26.84085 -26.21360 -24.52603 -22.71049 -20.98442 -20.75812 -19.50558 -18.93612 -18.25883 -17.71366 -17.44238 -17.06737 -16.48836 -16.14141 -16.05703 -15.68663 -15.48708 -14.97560 -14.51414 -14.33298 -13.93157 -13.68761 -13.56115 -13.06868 -12.94451 -12.48574 -12.43853 -12.34022 -11.99378 -11.95889 -11.86734 -11.42913 -11.10886 -10.90085 -10.29203 -10.21674 -8.75021 -5.01797 -0.05909 0.02759 0.67925 1.04583 1.26772 1.54594 1.67119 1.89090 1.97321 2.22626 3.24120 3.32189 3.40513 3.61673 3.68149 3.79165 3.94267 4.01487 4.23963 4.26551 4.47980 4.57915 4.59309 4.63319 4.66659 4.72849 4.83773 4.92520 4.96667 5.24751 5.32429 5.84791 6.12016 6.44764 6.63016 6.99291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.364 6.364 3 C 0.470 3.530 4 O -0.538 6.538 5 C -0.105 4.105 6 H 0.153 0.847 7 C -0.131 4.131 8 C 0.147 3.853 9 H 0.122 0.878 10 N -0.676 5.676 11 C 0.317 3.683 12 N -0.573 5.573 13 C 0.106 3.894 14 C -0.305 4.305 15 C -0.021 4.021 16 O -0.543 6.543 17 Si 0.720 3.280 18 S 0.107 5.893 19 C -0.121 4.121 20 H 0.127 0.873 21 H 0.062 0.938 22 H 0.060 0.940 23 H 0.084 0.916 24 H 0.092 0.908 25 H 0.424 0.576 26 H 0.181 0.819 27 H 0.137 0.863 28 H 0.386 0.614 29 H -0.276 1.276 30 H -0.267 1.267 31 H 0.101 0.899 32 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.222 0.544 1.594 2.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.280 6.280 3 C 0.315 3.685 4 O -0.427 6.427 5 C -0.124 4.124 6 H 0.170 0.830 7 C -0.170 4.170 8 C 0.039 3.961 9 H 0.140 0.860 10 N -0.315 5.315 11 C -0.054 4.054 12 N -0.299 5.299 13 C -0.044 4.044 14 C -0.428 4.428 15 C -0.134 4.134 16 O -0.351 6.351 17 Si 0.623 3.377 18 S 0.357 5.643 19 C -0.159 4.159 20 H 0.145 0.855 21 H 0.081 0.919 22 H 0.079 0.921 23 H 0.102 0.898 24 H 0.111 0.889 25 H 0.263 0.737 26 H 0.198 0.802 27 H 0.154 0.846 28 H 0.235 0.765 29 H -0.202 1.202 30 H -0.193 1.193 31 H 0.119 0.881 32 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -1.614 1.514 1.083 2.464 hybrid contribution -0.327 -1.352 -0.483 1.473 sum -1.941 0.162 0.600 2.038 Atomic orbital electron populations 1.23522 0.75079 1.05571 1.02443 1.86526 1.24736 1.33242 1.83472 1.24031 0.92583 0.80978 0.70915 1.90667 1.67917 1.37369 1.46788 1.22456 0.85798 1.01681 1.02464 0.82954 1.23494 0.97786 1.01473 0.94250 1.22435 0.97572 0.88941 0.87119 0.86018 1.44114 1.12157 1.37625 1.37640 1.23939 0.91655 0.94652 0.95124 1.66474 1.02359 1.28405 1.32637 1.21490 0.95460 0.96774 0.90710 1.25607 1.00474 1.06482 1.10249 1.24240 0.98575 0.97944 0.92616 1.86593 1.41831 1.51598 1.55041 0.94376 0.78530 0.81089 0.83684 1.83982 1.11400 1.35794 1.33174 1.23348 0.96627 0.94593 1.01332 0.85463 0.91939 0.92106 0.89752 0.88909 0.73701 0.80197 0.84587 0.76516 1.20170 1.19278 0.88057 0.88654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.04 10.56 113.37 1.20 1.16 16 2 O -0.36 -0.86 10.57 -51.40 -0.54 -1.40 16 3 C 0.47 1.34 7.49 71.24 0.53 1.88 16 4 O -0.54 -4.70 15.65 21.95 0.34 -4.36 16 5 C -0.10 0.39 4.26 -10.95 -0.05 0.34 16 6 H 0.15 -1.19 8.14 -2.39 -0.02 -1.21 16 7 C -0.13 0.48 7.44 31.18 0.23 0.71 16 8 C 0.15 -0.55 4.33 45.50 0.20 -0.35 16 9 H 0.12 -0.29 7.70 -2.39 -0.02 -0.31 16 10 N -0.68 1.76 5.52 -327.98 -1.81 -0.05 16 11 C 0.32 0.47 8.09 179.32 1.45 1.92 16 12 N -0.57 -2.66 9.85 -202.02 -1.99 -4.65 16 13 C 0.11 0.32 11.24 83.54 0.94 1.26 16 14 C -0.31 -0.23 5.73 24.57 0.14 -0.09 16 15 C -0.02 0.02 2.99 71.23 0.21 0.23 16 16 O -0.54 -1.12 12.88 -148.98 -1.92 -3.04 16 17 Si 0.72 -0.96 31.07 68.60 2.13 1.17 16 18 S 0.11 -0.06 20.59 -56.49 -1.16 -1.23 16 19 C -0.12 0.55 7.15 31.10 0.22 0.78 16 20 H 0.13 -0.85 8.14 -2.39 -0.02 -0.87 16 21 H 0.06 -0.06 8.13 -2.39 -0.02 -0.08 16 22 H 0.06 -0.05 8.13 -2.39 -0.02 -0.07 16 23 H 0.08 -0.18 8.10 -2.39 -0.02 -0.20 16 24 H 0.09 -0.35 8.14 -2.39 -0.02 -0.37 16 25 H 0.42 -2.55 8.83 -92.71 -0.82 -3.36 16 26 H 0.18 0.16 8.06 -2.91 -0.02 0.13 16 27 H 0.14 -0.42 7.96 -2.39 -0.02 -0.44 16 28 H 0.39 -1.13 8.70 -74.05 -0.64 -1.78 16 29 H -0.28 -1.37 7.11 99.48 0.71 -0.66 16 30 H -0.27 -0.67 7.11 99.48 0.71 0.03 16 31 H 0.10 -0.66 8.14 -2.39 -0.02 -0.68 16 32 H 0.10 -0.24 7.40 -2.38 -0.02 -0.26 16 Total: 0.00 -15.73 295.19 -0.14 -15.87 By element: Atomic # 1 Polarization: -9.87 SS G_CDS: -0.26 Total: -10.13 kcal Atomic # 6 Polarization: 2.74 SS G_CDS: 5.08 Total: 7.81 kcal Atomic # 7 Polarization: -0.90 SS G_CDS: -3.80 Total: -4.70 kcal Atomic # 8 Polarization: -6.68 SS G_CDS: -2.12 Total: -8.80 kcal Atomic # 14 Polarization: -0.96 SS G_CDS: 2.13 Total: 1.17 kcal Atomic # 16 Polarization: -0.06 SS G_CDS: -1.16 Total: -1.23 kcal Total: -15.73 -0.14 -15.87 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_10970306_15704118.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.182 kcal (2) G-P(sol) polarization free energy of solvation -15.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds