Wall clock time and date at job start Mon Mar 8 2021 07:22:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47262 * 2 1 4 4 C 1.53001 * 109.47000 * 240.00101 * 2 1 3 5 5 O 1.42900 * 109.46933 * 120.00099 * 2 1 3 6 6 C 1.42896 * 114.00092 * 59.99942 * 5 2 1 7 7 H 1.09001 * 112.91072 * 341.25463 * 6 5 2 8 8 C 1.53956 * 113.66855 * 112.43952 * 6 5 2 9 9 C 1.53784 * 87.02316 * 139.93537 * 8 6 5 10 10 H 1.08992 * 113.61568 * 89.22914 * 9 8 6 11 11 N 1.46500 * 113.61593 * 220.05058 * 9 8 6 12 12 C 1.38398 * 120.00091 * 254.13479 * 11 9 8 13 13 N 1.32501 * 119.21725 * 0.25057 * 12 11 9 14 14 C 1.32272 * 120.74110 * 180.26714 * 13 12 11 15 15 C 1.38605 * 119.19705 * 359.48581 * 14 13 12 16 16 C 1.50698 * 120.72340 * 180.27714 * 15 14 13 17 17 O 1.42901 * 109.47067 * 300.00497 * 16 15 14 18 18 Si 1.86299 * 109.47500 * 180.02562 * 16 15 14 19 19 C 1.38607 * 118.56029 * 0.25336 * 15 14 13 20 20 N 1.32280 * 119.19188 * 0.02562 * 19 15 14 21 21 C 1.53783 * 113.61730 * 209.99861 * 6 5 2 22 22 H 1.08995 * 109.47046 * 300.00153 * 1 2 3 23 23 H 1.09001 * 109.46909 * 59.99759 * 1 2 3 24 24 H 1.08996 * 109.46968 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47200 * 179.97438 * 3 2 1 26 26 H 1.08993 * 109.47166 * 299.99725 * 3 2 1 27 27 H 1.09007 * 109.46830 * 60.00565 * 3 2 1 28 28 H 1.09000 * 109.46778 * 299.99950 * 4 2 1 29 29 H 1.08993 * 109.47469 * 60.00250 * 4 2 1 30 30 H 1.09002 * 109.46740 * 180.02562 * 4 2 1 31 31 H 1.08998 * 113.61324 * 25.41421 * 8 6 5 32 32 H 1.09005 * 113.66619 * 254.45822 * 8 6 5 33 33 H 0.97005 * 119.99715 * 74.12761 * 11 9 8 34 34 H 1.08002 * 120.40454 * 179.76837 * 14 13 12 35 35 H 1.09003 * 109.47317 * 59.99676 * 16 15 14 36 36 H 0.96706 * 113.99828 * 299.99721 * 17 16 15 37 37 H 1.48508 * 109.99863 * 58.68035 * 18 16 15 38 38 H 1.48502 * 110.00117 * 179.97438 * 18 16 15 39 39 H 1.08001 * 120.40449 * 180.02562 * 19 15 14 40 40 H 1.08998 * 113.61157 * 105.46981 * 21 6 5 41 41 H 1.08995 * 113.61413 * 334.56586 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0063 -0.6737 1.1668 6 6 1.5846 -2.0355 1.2645 7 1 0.7241 -2.2595 0.6340 8 6 2.7335 -3.0501 1.1198 9 6 2.0561 -3.8558 2.2409 10 1 1.3244 -4.5779 1.8787 11 7 2.9999 -4.4347 3.2002 12 6 3.2652 -5.7928 3.1765 13 7 2.6606 -6.5543 2.2763 14 6 2.8879 -7.8565 2.2300 15 6 3.7782 -8.4199 3.1306 16 6 4.0674 -9.8986 3.1045 17 8 2.8574 -10.6247 3.3297 18 14 5.2981 -10.3145 4.4399 19 6 4.3972 -7.5936 4.0555 20 7 4.1211 -6.3000 4.0514 21 6 1.4331 -2.5312 2.7123 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 3.1300 1.4425 0.0005 26 1 1.6768 1.9563 -0.8899 27 1 1.6767 1.9563 0.8901 28 1 1.6766 -1.7489 -1.2492 29 1 1.6767 -0.2074 -2.1392 30 1 3.1300 -0.7216 -1.2490 31 1 3.7080 -2.6489 1.3981 32 1 2.7449 -3.5640 0.1585 33 1 3.4390 -3.8660 3.8520 34 1 2.3893 -8.4726 1.4964 35 1 4.4791 -10.1713 2.1327 36 1 2.4348 -10.4315 4.1778 37 1 4.7611 -9.9185 5.7666 38 1 5.5913 -11.7702 4.4250 39 1 5.0964 -8.0011 4.7707 40 1 0.3964 -2.6266 3.0349 41 1 2.0515 -1.9878 3.4268 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_11572882_12175864.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:22:52 Heat of formation + Delta-G solvation = 11.981623 kcal Electronic energy + Delta-G solvation = -21867.540289 eV Core-core repulsion = 18557.704120 eV Total energy + Delta-G solvation = -3309.836169 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.14228 -40.89428 -38.80413 -38.01594 -35.51133 -34.72874 -33.70815 -31.95732 -28.45226 -28.35015 -26.93098 -26.66749 -25.97418 -24.66558 -23.07162 -21.17459 -20.81145 -19.23330 -19.00060 -18.10049 -17.61958 -16.83326 -16.59803 -16.24999 -16.05076 -15.95881 -15.65464 -15.53515 -14.90447 -14.54647 -14.47424 -14.17832 -14.03760 -13.53496 -13.31214 -13.22827 -13.15341 -12.87248 -12.72787 -12.68039 -12.37001 -12.23827 -12.06208 -11.92542 -11.83833 -11.70938 -11.29995 -11.21075 -10.70251 -10.40105 -10.06872 -9.11182 -4.91074 0.03370 0.13050 1.32055 1.60597 1.77553 1.97957 2.74878 2.76440 3.17036 3.41919 3.46545 3.54880 3.63469 3.71283 3.78882 3.81701 3.86128 3.91012 3.97948 4.10298 4.23362 4.30884 4.61038 4.62713 4.66041 4.69163 4.72392 4.77700 4.78850 4.81717 4.90463 4.92410 4.97220 5.00227 5.05181 5.17105 5.31979 5.33327 5.37111 5.75116 6.04004 6.35932 6.40949 6.48952 7.25065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.099 3.901 3 C -0.140 4.140 4 C -0.174 4.174 5 O -0.378 6.378 6 C 0.067 3.933 7 H 0.105 0.895 8 C -0.163 4.163 9 C 0.145 3.855 10 H 0.117 0.883 11 N -0.679 5.679 12 C 0.552 3.448 13 N -0.581 5.581 14 C 0.213 3.787 15 C -0.285 4.285 16 C -0.054 4.054 17 O -0.546 6.546 18 Si 0.757 3.243 19 C 0.194 3.806 20 N -0.586 5.586 21 C -0.138 4.138 22 H 0.060 0.940 23 H 0.077 0.923 24 H 0.064 0.936 25 H 0.056 0.944 26 H 0.084 0.916 27 H 0.059 0.941 28 H 0.061 0.939 29 H 0.076 0.924 30 H 0.055 0.945 31 H 0.081 0.919 32 H 0.073 0.927 33 H 0.418 0.582 34 H 0.185 0.815 35 H 0.133 0.867 36 H 0.385 0.615 37 H -0.282 1.282 38 H -0.299 1.299 39 H 0.187 0.813 40 H 0.089 0.911 41 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.061 1.153 -1.755 2.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.060 3.940 3 C -0.197 4.197 4 C -0.231 4.231 5 O -0.298 6.298 6 C 0.009 3.991 7 H 0.122 0.878 8 C -0.202 4.202 9 C 0.039 3.961 10 H 0.134 0.866 11 N -0.315 5.315 12 C 0.196 3.804 13 N -0.304 5.304 14 C 0.045 3.955 15 C -0.293 4.293 16 C -0.165 4.165 17 O -0.354 6.354 18 Si 0.662 3.338 19 C 0.027 3.973 20 N -0.308 5.308 21 C -0.177 4.177 22 H 0.079 0.921 23 H 0.096 0.904 24 H 0.083 0.917 25 H 0.075 0.925 26 H 0.103 0.897 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.095 0.905 30 H 0.074 0.926 31 H 0.099 0.901 32 H 0.091 0.909 33 H 0.257 0.743 34 H 0.202 0.798 35 H 0.150 0.850 36 H 0.234 0.766 37 H -0.208 1.208 38 H -0.227 1.227 39 H 0.203 0.797 40 H 0.108 0.892 41 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 0.019 1.675 -1.597 2.314 hybrid contribution -0.843 -0.905 0.480 1.327 sum -0.823 0.770 -1.117 1.587 Atomic orbital electron populations 1.22454 0.94841 1.02872 1.03298 1.21683 0.93773 0.93283 0.85275 1.21796 1.01602 0.93244 1.03041 1.22447 1.01744 1.01007 0.97945 1.88010 1.74224 1.23851 1.43676 1.23414 0.97027 0.81353 0.97332 0.87765 1.24026 0.99570 0.97048 0.99578 1.22194 0.91312 0.93403 0.89190 0.86550 1.44205 1.47175 1.02206 1.37929 1.19668 0.86725 0.87894 0.86149 1.68011 1.29527 1.07361 1.25499 1.23189 0.89708 0.88826 0.93729 1.21701 1.05809 0.99274 1.02509 1.24829 0.93236 0.86576 1.11853 1.86585 1.38471 1.67283 1.43039 0.94295 0.84300 0.80125 0.75075 1.23160 0.93163 0.87249 0.93759 1.67940 1.20052 1.15907 1.26911 1.23598 1.02656 0.94283 0.97129 0.92097 0.90422 0.91710 0.92456 0.89733 0.92225 0.92036 0.90549 0.92551 0.90056 0.90872 0.74318 0.79845 0.84974 0.76551 1.20834 1.22669 0.79708 0.89203 0.88797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 0.39 8.38 71.98 0.60 0.99 16 2 C 0.10 0.01 1.11 -10.79 -0.01 -0.01 16 3 C -0.14 0.08 8.84 71.98 0.64 0.71 16 4 C -0.17 0.22 8.38 71.98 0.60 0.83 16 5 O -0.38 -1.24 10.00 -148.98 -1.49 -2.73 16 6 C 0.07 -0.03 2.82 31.18 0.09 0.06 16 7 H 0.10 -0.28 5.55 -2.39 -0.01 -0.29 16 8 C -0.16 -0.09 7.73 31.18 0.24 0.15 16 9 C 0.14 0.03 4.22 45.52 0.19 0.22 16 10 H 0.12 0.15 7.41 -2.39 -0.02 0.13 16 11 N -0.68 -1.72 5.51 -327.93 -1.81 -3.53 16 12 C 0.55 3.32 8.43 261.49 2.20 5.52 16 13 N -0.58 -3.16 9.15 -197.99 -1.81 -4.98 16 14 C 0.21 0.36 10.92 84.71 0.93 1.28 16 15 C -0.28 0.15 5.40 -19.69 -0.11 0.04 16 16 C -0.05 0.17 2.85 71.24 0.20 0.37 16 17 O -0.55 0.08 12.79 -148.98 -1.90 -1.82 16 18 Si 0.76 -2.91 29.87 68.60 2.05 -0.86 16 19 C 0.19 0.18 9.92 84.71 0.84 1.02 16 20 N -0.59 -3.36 10.46 -197.99 -2.07 -5.43 16 21 C -0.14 0.20 7.66 31.12 0.24 0.44 16 22 H 0.06 -0.06 8.14 -2.39 -0.02 -0.08 16 23 H 0.08 -0.31 8.14 -2.39 -0.02 -0.33 16 24 H 0.06 -0.20 6.25 -2.39 -0.01 -0.22 16 25 H 0.06 0.04 8.14 -2.39 -0.02 0.02 16 26 H 0.08 -0.29 8.14 -2.39 -0.02 -0.31 16 27 H 0.06 0.02 8.14 -2.38 -0.02 0.00 16 28 H 0.06 -0.11 7.02 -2.39 -0.02 -0.12 16 29 H 0.08 -0.25 8.14 -2.39 -0.02 -0.27 16 30 H 0.06 0.03 8.14 -2.39 -0.02 0.01 16 31 H 0.08 0.25 8.14 -2.39 -0.02 0.23 16 32 H 0.07 0.06 8.14 -2.38 -0.02 0.04 16 33 H 0.42 0.32 8.83 -92.70 -0.82 -0.50 16 34 H 0.18 -0.41 8.06 -2.91 -0.02 -0.43 16 35 H 0.13 -0.72 7.96 -2.39 -0.02 -0.74 16 36 H 0.39 -1.93 8.70 -74.05 -0.64 -2.57 16 37 H -0.28 -0.07 7.11 99.48 0.71 0.64 16 38 H -0.30 -1.20 7.11 99.48 0.71 -0.50 16 39 H 0.19 -0.81 5.04 -2.91 -0.01 -0.83 16 40 H 0.09 -0.28 8.14 -2.39 -0.02 -0.30 16 41 H 0.09 -0.07 8.11 -2.39 -0.02 -0.09 16 Total: 0.00 -13.43 332.99 -0.76 -14.19 By element: Atomic # 1 Polarization: -6.11 SS G_CDS: -0.38 Total: -6.49 kcal Atomic # 6 Polarization: 4.99 SS G_CDS: 6.66 Total: 11.64 kcal Atomic # 7 Polarization: -8.25 SS G_CDS: -5.69 Total: -13.94 kcal Atomic # 8 Polarization: -1.15 SS G_CDS: -3.39 Total: -4.55 kcal Atomic # 14 Polarization: -2.91 SS G_CDS: 2.05 Total: -0.86 kcal Total: -13.43 -0.76 -14.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_11572882_12175864.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.173 kcal (2) G-P(sol) polarization free energy of solvation -13.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.191 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds