Wall clock time and date at job start Mon Mar 8 2021 07:22:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46972 * 2 1 4 4 C 1.52998 * 109.47365 * 239.99885 * 2 1 3 5 5 O 1.42902 * 109.46752 * 119.99600 * 2 1 3 6 6 C 1.42901 * 113.99678 * 60.00286 * 5 2 1 7 7 H 1.09000 * 112.91049 * 18.74630 * 6 5 2 8 8 C 1.53787 * 113.61020 * 149.99776 * 6 5 2 9 9 C 1.53784 * 87.07923 * 139.98045 * 8 6 5 10 10 H 1.09002 * 113.61478 * 89.11632 * 9 8 6 11 11 N 1.46497 * 113.61569 * 220.01663 * 9 8 6 12 12 C 1.38600 * 120.00322 * 205.00223 * 11 9 8 13 13 N 1.29685 * 124.94959 * 359.68899 * 12 11 9 14 14 C 1.32124 * 116.86955 * 179.81774 * 13 12 11 15 15 C 1.33332 * 114.57389 * 0.47500 * 14 13 12 16 16 C 1.50696 * 125.94698 * 179.75408 * 15 14 13 17 17 O 1.42898 * 109.47408 * 64.97712 * 16 15 14 18 18 Si 1.86307 * 109.47116 * 184.97677 * 16 15 14 19 19 S 1.70968 * 124.95233 * 180.02562 * 12 11 9 20 20 C 1.53779 * 87.08045 * 334.56667 * 9 8 6 21 21 H 1.08996 * 109.47538 * 300.00568 * 1 2 3 22 22 H 1.09000 * 109.46938 * 59.99936 * 1 2 3 23 23 H 1.08994 * 109.47205 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.46811 * 179.97438 * 3 2 1 25 25 H 1.09003 * 109.46926 * 299.99524 * 3 2 1 26 26 H 1.08999 * 109.46818 * 59.99752 * 3 2 1 27 27 H 1.09000 * 109.46973 * 300.00528 * 4 2 1 28 28 H 1.09000 * 109.46946 * 60.00184 * 4 2 1 29 29 H 1.08997 * 109.47150 * 179.97438 * 4 2 1 30 30 H 1.09004 * 113.61202 * 254.52798 * 8 6 5 31 31 H 1.08994 * 113.61447 * 25.43229 * 8 6 5 32 32 H 0.97009 * 119.99534 * 24.99936 * 11 9 8 33 33 H 1.07997 * 122.71246 * 180.23321 * 14 13 12 34 34 H 1.09007 * 109.47387 * 304.97236 * 16 15 14 35 35 H 0.96697 * 114.00020 * 60.00157 * 17 16 15 36 36 H 1.48500 * 109.99914 * 179.97438 * 18 16 15 37 37 H 1.48497 * 109.99744 * 301.32197 * 18 16 15 38 38 H 1.09006 * 113.61307 * 270.88660 * 20 9 8 39 39 H 1.09007 * 113.61642 * 139.98417 * 20 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7213 -1.2492 5 8 2.0063 -0.6736 1.1669 6 6 1.5846 -2.0355 1.2645 7 1 1.2511 -2.4458 0.3114 8 6 2.5836 -2.9378 2.0080 9 6 1.3666 -3.6119 2.6633 10 1 0.9735 -4.4532 2.0925 11 7 1.5623 -3.9262 4.0807 12 6 0.8360 -4.9487 4.6705 13 7 -0.0431 -5.6825 4.0617 14 6 -0.6404 -6.6175 4.7791 15 6 -0.2546 -6.6691 6.0543 16 6 -0.7702 -7.6277 7.0965 17 8 -0.4011 -8.9616 6.7410 18 14 -0.0325 -7.1999 8.7530 19 16 0.9624 -5.4211 6.3088 20 6 0.6076 -2.2962 2.4231 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 3.1300 1.4425 0.0005 25 1 1.6767 1.9563 -0.8901 26 1 1.6766 1.9563 0.8900 27 1 1.6767 -1.7489 -1.2492 28 1 1.6768 -0.2074 -2.1392 29 1 3.1300 -0.7208 -1.2494 30 1 3.1477 -3.5993 1.3503 31 1 3.2170 -2.3997 2.7132 32 1 2.2003 -3.4186 4.6064 33 1 -1.3839 -7.2835 4.3669 34 1 -1.8563 -7.5538 7.1525 35 1 0.5534 -9.1007 6.6728 36 1 -0.5337 -8.1377 9.7896 37 1 1.4493 -7.2658 8.6813 38 1 0.7008 -1.5826 3.2419 39 1 -0.4238 -2.4397 2.1007 There are 50 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 50 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_11572882_15704118.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:22:57 Heat of formation + Delta-G solvation = 1.689692 kcal Electronic energy + Delta-G solvation = -20299.958717 eV Core-core repulsion = 17144.254414 eV Total energy + Delta-G solvation = -3155.704303 eV No. of doubly occupied orbitals = 50 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 285.119 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.18246 -40.49204 -38.71878 -37.90332 -35.28162 -33.56022 -31.22640 -28.45829 -28.35321 -26.91603 -26.62740 -25.53902 -24.01383 -21.61410 -20.92281 -20.56472 -19.51099 -18.35914 -17.68410 -17.13354 -16.76851 -16.42162 -16.03318 -15.95473 -15.88332 -15.40509 -15.05549 -14.88061 -14.43906 -14.19521 -13.91698 -13.51759 -13.30933 -13.19203 -12.94641 -12.86074 -12.71806 -12.68008 -12.47862 -12.31496 -12.10579 -11.97203 -11.83098 -11.30087 -11.09749 -10.91401 -10.39788 -10.29767 -10.22954 -8.74313 -5.02469 -0.07266 0.01291 0.66289 1.25676 1.54291 1.87969 1.95530 2.12592 2.77848 3.39453 3.45568 3.54051 3.67041 3.81411 3.85907 3.90710 3.92722 3.98230 4.10199 4.29573 4.57166 4.62205 4.63101 4.69033 4.70760 4.73121 4.78839 4.81261 4.90777 4.91994 4.95378 4.99141 5.02321 5.14513 5.25999 5.33039 5.35942 5.85021 6.12783 6.39244 6.43904 6.99130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.099 3.901 3 C -0.139 4.139 4 C -0.178 4.178 5 O -0.376 6.376 6 C 0.065 3.935 7 H 0.101 0.899 8 C -0.137 4.137 9 C 0.144 3.856 10 H 0.109 0.891 11 N -0.673 5.673 12 C 0.316 3.684 13 N -0.578 5.578 14 C 0.105 3.895 15 C -0.306 4.306 16 C -0.022 4.022 17 O -0.543 6.543 18 Si 0.721 3.279 19 S 0.111 5.889 20 C -0.163 4.163 21 H 0.057 0.943 22 H 0.075 0.925 23 H 0.059 0.941 24 H 0.059 0.941 25 H 0.083 0.917 26 H 0.057 0.943 27 H 0.063 0.937 28 H 0.076 0.924 29 H 0.061 0.939 30 H 0.087 0.913 31 H 0.098 0.902 32 H 0.424 0.576 33 H 0.180 0.820 34 H 0.136 0.864 35 H 0.386 0.614 36 H -0.275 1.275 37 H -0.265 1.265 38 H 0.087 0.913 39 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.970 3.472 -0.871 3.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.060 3.940 3 C -0.196 4.196 4 C -0.235 4.235 5 O -0.296 6.296 6 C 0.007 3.993 7 H 0.119 0.881 8 C -0.175 4.175 9 C 0.036 3.964 10 H 0.127 0.873 11 N -0.312 5.312 12 C -0.055 4.055 13 N -0.304 5.304 14 C -0.046 4.046 15 C -0.429 4.429 16 C -0.134 4.134 17 O -0.351 6.351 18 Si 0.624 3.376 19 S 0.361 5.639 20 C -0.202 4.202 21 H 0.076 0.924 22 H 0.094 0.906 23 H 0.078 0.922 24 H 0.078 0.922 25 H 0.102 0.898 26 H 0.077 0.923 27 H 0.082 0.918 28 H 0.095 0.905 29 H 0.080 0.920 30 H 0.106 0.894 31 H 0.117 0.883 32 H 0.264 0.736 33 H 0.197 0.803 34 H 0.153 0.847 35 H 0.235 0.765 36 H -0.200 1.200 37 H -0.191 1.191 38 H 0.106 0.894 39 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 1.414 3.692 0.055 3.954 hybrid contribution -0.015 -1.287 -1.009 1.635 sum 1.399 2.406 -0.955 2.942 Atomic orbital electron populations 1.22447 0.95097 1.02635 1.02989 1.21671 0.93570 0.93412 0.85297 1.21794 1.01735 0.93157 1.02964 1.22457 1.02019 1.01123 0.97902 1.88006 1.74089 1.23758 1.43716 1.23388 0.95583 0.82628 0.97741 0.88120 1.23607 0.96802 0.97364 0.99765 1.22182 0.97279 0.96473 0.80462 0.87324 1.44068 1.43086 1.33421 1.10631 1.23966 0.94019 0.93460 0.94006 1.66472 1.14180 1.11511 1.38248 1.21476 0.98738 0.94843 0.89495 1.25615 1.08604 1.07974 1.00683 1.24261 1.05307 0.80736 1.03144 1.86588 1.29792 1.27624 1.91061 0.94354 0.79020 0.89573 0.74685 1.83909 1.40892 1.31330 1.07818 1.24014 0.99383 0.97369 0.99481 0.92415 0.90636 0.92186 0.92169 0.89825 0.92347 0.91844 0.90491 0.92039 0.89391 0.88311 0.73627 0.80326 0.84693 0.76498 1.20047 1.19104 0.89431 0.91231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 0.26 8.38 71.98 0.60 0.87 16 2 C 0.10 -0.04 1.11 -10.79 -0.01 -0.05 16 3 C -0.14 0.16 8.84 71.98 0.64 0.80 16 4 C -0.18 0.41 8.38 71.98 0.60 1.02 16 5 O -0.38 -0.87 10.00 -148.98 -1.49 -2.35 16 6 C 0.07 -0.07 2.82 31.12 0.09 0.01 16 7 H 0.10 -0.26 5.55 -2.39 -0.01 -0.28 16 8 C -0.14 0.39 7.66 31.12 0.24 0.63 16 9 C 0.14 -0.13 4.36 45.52 0.20 0.06 16 10 H 0.11 0.18 7.67 -2.39 -0.02 0.17 16 11 N -0.67 0.55 5.51 -327.91 -1.81 -1.26 16 12 C 0.32 0.99 8.09 179.32 1.45 2.44 16 13 N -0.58 -3.82 9.84 -202.03 -1.99 -5.80 16 14 C 0.11 0.47 11.24 83.54 0.94 1.41 16 15 C -0.31 -0.55 5.73 24.57 0.14 -0.41 16 16 C -0.02 0.00 2.99 71.23 0.21 0.21 16 17 O -0.54 -1.46 12.88 -148.98 -1.92 -3.38 16 18 Si 0.72 -0.67 31.07 68.60 2.13 1.46 16 19 S 0.11 0.03 20.59 -56.49 -1.16 -1.13 16 20 C -0.16 0.08 7.71 31.12 0.24 0.32 16 21 H 0.06 0.00 8.14 -2.39 -0.02 -0.02 16 22 H 0.07 -0.25 8.14 -2.39 -0.02 -0.27 16 23 H 0.06 -0.10 7.02 -2.39 -0.02 -0.11 16 24 H 0.06 -0.02 8.14 -2.39 -0.02 -0.04 16 25 H 0.08 -0.32 8.14 -2.39 -0.02 -0.34 16 26 H 0.06 0.00 8.14 -2.39 -0.02 -0.02 16 27 H 0.06 -0.19 6.25 -2.39 -0.01 -0.21 16 28 H 0.08 -0.31 8.14 -2.39 -0.02 -0.33 16 29 H 0.06 -0.08 8.14 -2.39 -0.02 -0.10 16 30 H 0.09 -0.34 8.14 -2.39 -0.02 -0.36 16 31 H 0.10 -0.31 8.12 -2.39 -0.02 -0.33 16 32 H 0.42 -2.09 8.85 -92.70 -0.82 -2.91 16 33 H 0.18 0.42 8.06 -2.91 -0.02 0.40 16 34 H 0.14 -0.30 7.96 -2.38 -0.02 -0.32 16 35 H 0.39 -0.93 8.70 -74.06 -0.64 -1.57 16 36 H -0.27 -1.43 7.11 99.48 0.71 -0.72 16 37 H -0.27 -0.72 7.11 99.48 0.71 -0.02 16 38 H 0.09 0.07 8.14 -2.38 -0.02 0.05 16 39 H 0.07 0.04 8.14 -2.38 -0.02 0.02 16 Total: 0.00 -11.21 330.98 -1.27 -12.47 By element: Atomic # 1 Polarization: -6.94 SS G_CDS: -0.37 Total: -7.31 kcal Atomic # 6 Polarization: 1.96 SS G_CDS: 5.34 Total: 7.30 kcal Atomic # 7 Polarization: -3.27 SS G_CDS: -3.79 Total: -7.06 kcal Atomic # 8 Polarization: -2.33 SS G_CDS: -3.41 Total: -5.74 kcal Atomic # 14 Polarization: -0.67 SS G_CDS: 2.13 Total: 1.46 kcal Atomic # 16 Polarization: 0.03 SS G_CDS: -1.16 Total: -1.13 kcal Total: -11.21 -1.27 -12.47 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_11572882_15704118.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.163 kcal (2) G-P(sol) polarization free energy of solvation -11.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -12.474 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds