Wall clock time and date at job start Mon Mar 8 2021 07:22:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.33333 * 125.94865 * 2 1 4 4 C 1.50699 * 122.70957 * 0.02562 * 3 2 1 5 5 O 1.42900 * 109.47352 * 41.95412 * 4 3 2 6 6 Si 1.86305 * 109.46591 * 161.95371 * 4 3 2 7 7 N 1.32117 * 114.57680 * 180.02562 * 3 2 1 8 8 C 1.29696 * 116.86706 * 359.97438 * 7 3 2 9 9 N 1.38613 * 124.94946 * 180.02562 * 8 7 3 10 10 C 1.46495 * 119.99933 * 180.02562 * 9 8 7 11 11 H 1.08998 * 112.85360 * 23.80195 * 10 9 8 12 12 C 1.53789 * 113.61349 * 154.99483 * 10 9 8 13 13 C 1.53783 * 87.07769 * 139.97799 * 12 10 9 14 14 H 1.09004 * 113.61313 * 89.11612 * 13 12 10 15 15 O 1.42898 * 113.61744 * 220.01695 * 13 12 10 16 16 C 1.42892 * 114.00424 * 210.00411 * 15 13 12 17 17 C 1.53000 * 109.47312 * 59.99858 * 16 15 13 18 18 C 1.53001 * 109.47537 * 179.97438 * 16 15 13 19 19 C 1.53005 * 109.47040 * 300.00268 * 16 15 13 20 20 C 1.53776 * 113.61287 * 252.49317 * 10 9 8 21 21 S 1.70963 * 110.10033 * 359.72711 * 8 7 3 22 22 H 1.09002 * 109.47171 * 84.06369 * 1 2 3 23 23 H 1.09000 * 109.47071 * 324.06319 * 1 2 3 24 24 H 1.09001 * 109.46913 * 204.06400 * 1 2 3 25 25 H 1.08998 * 109.47171 * 281.94857 * 4 3 2 26 26 H 0.96700 * 113.99765 * 59.99880 * 5 4 3 27 27 H 1.48501 * 109.99987 * 58.68296 * 6 4 3 28 28 H 1.48507 * 109.99669 * 179.97438 * 6 4 3 29 29 H 0.97004 * 119.99874 * 359.97438 * 9 8 7 30 30 H 1.08994 * 113.61306 * 254.52746 * 12 10 9 31 31 H 1.09005 * 113.61059 * 25.35004 * 12 10 9 32 32 H 1.09002 * 109.46909 * 59.99973 * 17 16 15 33 33 H 1.08994 * 109.47691 * 180.02562 * 17 16 15 34 34 H 1.09000 * 109.47504 * 300.00642 * 17 16 15 35 35 H 1.09000 * 109.46874 * 59.99761 * 18 16 15 36 36 H 1.08999 * 109.47405 * 179.97438 * 18 16 15 37 37 H 1.09002 * 109.46981 * 300.00208 * 18 16 15 38 38 H 1.08992 * 109.47131 * 59.99888 * 19 16 15 39 39 H 1.09003 * 109.46544 * 180.02562 * 19 16 15 40 40 H 1.08999 * 109.46867 * 299.99093 * 19 16 15 41 41 H 1.08998 * 113.61452 * 334.56754 * 20 10 9 42 42 H 1.09000 * 113.61394 * 105.47340 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2897 1.0794 0.0000 4 6 1.7413 2.4830 0.0006 5 8 0.6350 2.5619 0.9017 6 14 3.0711 3.6690 0.5446 7 7 3.5850 0.8189 -0.0005 8 6 3.9314 -0.4309 -0.0005 9 7 5.2384 -0.8926 -0.0005 10 6 5.5065 -2.3328 -0.0010 11 1 4.6806 -2.9170 -0.4066 12 6 6.8748 -2.7045 -0.5966 13 6 6.9928 -3.7471 0.5277 14 1 6.5733 -4.7190 0.2676 15 8 8.3043 -3.8393 1.0876 16 6 8.6345 -5.1379 1.5839 17 6 8.5584 -6.1545 0.4430 18 6 10.0534 -5.1197 2.1562 19 6 7.6455 -5.5304 2.6834 20 6 6.0358 -2.8613 1.3427 21 16 2.5413 -1.4260 0.0080 22 1 -0.3633 0.1063 -1.0222 23 1 -0.3633 0.8321 0.6031 24 1 -0.3633 -0.9384 0.4190 25 1 1.4105 2.7443 -1.0046 26 1 0.8567 2.3418 1.8168 27 1 4.2402 3.5737 -0.3662 28 1 2.5431 5.0570 0.5488 29 1 5.9756 -0.2620 -0.0009 30 1 6.8130 -3.1418 -1.5930 31 1 7.6117 -1.9040 -0.5305 32 1 9.2629 -5.8749 -0.3403 33 1 8.8098 -7.1452 0.8216 34 1 7.5478 -6.1676 0.0348 35 1 10.1080 -4.3954 2.9689 36 1 10.3051 -6.1102 2.5351 37 1 10.7576 -4.8403 1.3725 38 1 6.6350 -5.5435 2.2753 39 1 7.8978 -6.5209 3.0622 40 1 7.6999 -4.8063 3.4963 41 1 6.5438 -2.1042 1.9401 42 1 5.2967 -3.4253 1.9117 There are 53 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 53 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_11572882_15704122.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:22:59 Heat of formation + Delta-G solvation = -0.837018 kcal Electronic energy + Delta-G solvation = -22336.414413 eV Core-core repulsion = 19025.062924 eV Total energy + Delta-G solvation = -3311.351489 eV No. of doubly occupied orbitals = 53 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 299.134 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.24777 -40.83411 -38.84526 -37.66325 -35.35514 -33.66875 -32.40710 -29.28150 -28.41213 -28.33747 -26.71863 -25.87180 -25.17888 -23.99620 -21.61096 -20.93951 -20.19980 -19.13907 -18.02716 -17.67701 -17.32427 -16.84570 -16.68902 -15.98013 -15.93645 -15.68189 -15.36045 -14.99973 -14.57297 -14.30640 -14.24876 -14.02197 -13.77094 -13.53505 -13.39958 -13.28090 -13.14314 -12.85819 -12.80475 -12.69515 -12.65812 -12.40032 -12.30045 -12.11896 -12.01639 -11.79199 -11.29372 -10.91432 -10.64666 -10.40397 -10.37678 -10.05600 -8.65207 -4.93777 -0.03961 0.13281 0.72112 1.33226 1.70698 1.80342 1.88054 2.07929 2.78707 3.33425 3.43638 3.46722 3.52669 3.72573 3.78551 3.90897 3.97244 4.09624 4.14878 4.19096 4.34962 4.47252 4.56769 4.63872 4.67535 4.71451 4.78693 4.79828 4.80783 4.85240 4.90004 4.92346 4.96998 4.98947 5.04320 5.14303 5.20900 5.34551 5.35391 5.36662 5.66142 6.26412 6.40030 6.65253 6.92148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.242 4.242 3 C 0.050 3.950 4 C -0.029 4.029 5 O -0.538 6.538 6 Si 0.791 3.209 7 N -0.571 5.571 8 C 0.308 3.692 9 N -0.677 5.677 10 C 0.131 3.869 11 H 0.117 0.883 12 C -0.137 4.137 13 C 0.065 3.935 14 H 0.109 0.891 15 O -0.378 6.378 16 C 0.099 3.901 17 C -0.178 4.178 18 C -0.141 4.141 19 C -0.174 4.174 20 C -0.164 4.164 21 S 0.123 5.877 22 H 0.066 0.934 23 H 0.104 0.896 24 H 0.070 0.930 25 H 0.114 0.886 26 H 0.395 0.605 27 H -0.306 1.306 28 H -0.294 1.294 29 H 0.414 0.586 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.058 0.942 33 H 0.076 0.924 34 H 0.066 0.934 35 H 0.056 0.944 36 H 0.083 0.917 37 H 0.057 0.943 38 H 0.064 0.936 39 H 0.074 0.926 40 H 0.056 0.944 41 H 0.086 0.914 42 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.287 -6.279 2.418 6.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.365 4.365 3 C -0.080 4.080 4 C -0.143 4.143 5 O -0.345 6.345 6 Si 0.699 3.301 7 N -0.299 5.299 8 C -0.063 4.063 9 N -0.316 5.316 10 C 0.025 3.975 11 H 0.135 0.865 12 C -0.176 4.176 13 C 0.006 3.994 14 H 0.127 0.873 15 O -0.297 6.297 16 C 0.061 3.939 17 C -0.235 4.235 18 C -0.198 4.198 19 C -0.232 4.232 20 C -0.204 4.204 21 S 0.372 5.628 22 H 0.084 0.916 23 H 0.123 0.877 24 H 0.089 0.911 25 H 0.131 0.869 26 H 0.246 0.754 27 H -0.234 1.234 28 H -0.223 1.223 29 H 0.253 0.747 30 H 0.111 0.889 31 H 0.112 0.888 32 H 0.078 0.922 33 H 0.095 0.905 34 H 0.085 0.915 35 H 0.076 0.924 36 H 0.102 0.898 37 H 0.076 0.924 38 H 0.083 0.917 39 H 0.093 0.907 40 H 0.075 0.925 41 H 0.105 0.895 42 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 0.876 -6.163 1.697 6.452 hybrid contribution -0.073 0.700 -0.683 0.981 sum 0.803 -5.463 1.014 5.614 Atomic orbital electron populations 1.20393 0.85614 1.04302 1.03207 1.25417 1.02059 0.92950 1.16036 1.20202 0.86674 0.97761 1.03327 1.24448 0.97146 0.95391 0.97314 1.86419 1.33870 1.91458 1.22766 0.92959 0.73967 0.73302 0.89891 1.65912 1.17853 1.17661 1.28450 1.23547 0.92787 0.91593 0.98360 1.44056 1.01251 1.07156 1.79153 1.22425 0.98161 0.78879 0.98034 0.86485 1.23588 0.95307 0.99361 0.99307 1.23426 0.83782 0.98298 0.93872 0.87335 1.88021 1.32001 1.31362 1.78324 1.21672 0.95838 0.82977 0.93460 1.22461 1.02762 0.99734 0.98562 1.21802 0.93896 1.03059 1.01037 1.22451 0.99387 1.02537 0.98799 1.24069 0.99050 1.00026 0.97219 1.83745 0.95536 1.09840 1.73714 0.91577 0.87729 0.91062 0.86859 0.75437 1.23405 1.22261 0.74714 0.88936 0.88837 0.92247 0.90504 0.91478 0.92450 0.89806 0.92363 0.91677 0.90678 0.92455 0.89508 0.89768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.01 9.95 71.24 0.71 0.70 16 2 C -0.24 -0.84 6.49 24.58 0.16 -0.68 16 3 C 0.05 0.28 5.99 41.41 0.25 0.52 16 4 C -0.03 -0.10 2.78 71.24 0.20 0.10 16 5 O -0.54 -0.15 10.06 -148.98 -1.50 -1.65 16 6 Si 0.79 3.33 31.90 68.60 2.19 5.52 16 7 N -0.57 -4.28 8.65 -189.85 -1.64 -5.92 16 8 C 0.31 1.28 8.24 179.32 1.48 2.76 16 9 N -0.68 -0.11 5.51 -327.90 -1.81 -1.92 16 10 C 0.13 -0.49 4.23 45.52 0.19 -0.30 16 11 H 0.12 -0.62 7.06 -2.39 -0.02 -0.64 16 12 C -0.14 0.56 7.66 31.12 0.24 0.80 16 13 C 0.06 -0.23 2.82 31.12 0.09 -0.14 16 14 H 0.11 -0.68 5.55 -2.38 -0.01 -0.70 16 15 O -0.38 -0.40 10.00 -148.98 -1.49 -1.89 16 16 C 0.10 -0.18 1.11 -10.79 -0.01 -0.19 16 17 C -0.18 0.69 8.38 71.98 0.60 1.30 16 18 C -0.14 0.24 8.84 71.98 0.64 0.88 16 19 C -0.17 0.61 8.39 71.98 0.60 1.22 16 20 C -0.16 0.58 7.71 31.12 0.24 0.82 16 21 S 0.12 0.17 21.69 -56.49 -1.23 -1.06 16 22 H 0.07 0.04 8.14 -2.39 -0.02 0.02 16 23 H 0.10 -0.05 5.58 -2.39 -0.01 -0.06 16 24 H 0.07 -0.14 8.14 -2.39 -0.02 -0.16 16 25 H 0.11 0.47 7.96 -2.39 -0.02 0.45 16 26 H 0.40 -2.72 8.70 -74.06 -0.64 -3.36 16 27 H -0.31 -3.86 7.11 99.48 0.71 -3.16 16 28 H -0.29 -2.66 7.11 99.48 0.71 -1.95 16 29 H 0.41 -0.05 8.85 -92.71 -0.82 -0.87 16 30 H 0.09 -0.53 8.14 -2.39 -0.02 -0.55 16 31 H 0.09 -0.23 8.12 -2.38 -0.02 -0.24 16 32 H 0.06 -0.14 8.14 -2.39 -0.02 -0.16 16 33 H 0.08 -0.41 8.14 -2.39 -0.02 -0.43 16 34 H 0.07 -0.37 6.25 -2.39 -0.01 -0.38 16 35 H 0.06 -0.02 8.14 -2.39 -0.02 -0.04 16 36 H 0.08 -0.37 8.14 -2.39 -0.02 -0.39 16 37 H 0.06 -0.03 8.14 -2.39 -0.02 -0.05 16 38 H 0.06 -0.31 7.02 -2.39 -0.02 -0.33 16 39 H 0.07 -0.38 8.14 -2.39 -0.02 -0.40 16 40 H 0.06 -0.10 8.14 -2.39 -0.02 -0.12 16 41 H 0.09 -0.05 8.14 -2.39 -0.02 -0.07 16 42 H 0.08 -0.41 8.14 -2.39 -0.02 -0.43 16 Total: 0.00 -12.67 347.40 -0.49 -13.16 By element: Atomic # 1 Polarization: -13.61 SS G_CDS: -0.40 Total: -14.00 kcal Atomic # 6 Polarization: 2.39 SS G_CDS: 5.38 Total: 7.78 kcal Atomic # 7 Polarization: -4.39 SS G_CDS: -3.45 Total: -7.84 kcal Atomic # 8 Polarization: -0.56 SS G_CDS: -2.99 Total: -3.55 kcal Atomic # 14 Polarization: 3.33 SS G_CDS: 2.19 Total: 5.52 kcal Atomic # 16 Polarization: 0.17 SS G_CDS: -1.23 Total: -1.06 kcal Total: -12.67 -0.49 -13.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_11572882_15704122.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.320 kcal (2) G-P(sol) polarization free energy of solvation -12.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds