Wall clock time and date at job start Mon Mar 8 2021 07:23:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00347 * 2 1 3 5 5 O 1.42906 * 109.47321 * 240.00014 * 2 1 3 6 6 C 1.42898 * 113.99821 * 59.99868 * 5 2 1 7 7 H 1.09004 * 112.85036 * 341.19710 * 6 5 2 8 8 C 1.53779 * 113.61251 * 112.50258 * 6 5 2 9 9 C 1.53787 * 87.07995 * 139.98162 * 8 6 5 10 10 H 1.09005 * 113.61390 * 89.11628 * 9 8 6 11 11 N 1.46498 * 113.61669 * 220.02041 * 9 8 6 12 12 C 1.39148 * 119.99916 * 252.49927 * 11 9 8 13 13 N 1.32332 * 119.71599 * 359.97438 * 12 11 9 14 14 C 1.32007 * 121.64473 * 179.97438 * 13 12 11 15 15 C 1.37991 * 120.90100 * 359.97438 * 14 13 12 16 16 C 1.50696 * 120.32717 * 179.97438 * 15 14 13 17 17 O 1.42897 * 109.47275 * 245.00381 * 16 15 14 18 18 Si 1.86307 * 109.47285 * 5.00558 * 16 15 14 19 19 C 1.38901 * 119.34533 * 0.02562 * 15 14 13 20 20 C 1.38448 * 118.48490 * 359.74389 * 19 15 14 21 21 F 1.35103 * 120.47199 * 180.27173 * 20 19 15 22 22 C 1.53777 * 113.61489 * 210.00161 * 6 5 2 23 23 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 24 24 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 25 25 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 27 27 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 28 28 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 29 29 H 1.08993 * 109.46955 * 60.00011 * 4 2 1 30 30 H 1.09000 * 109.47050 * 179.97438 * 4 2 1 31 31 H 1.09001 * 109.47002 * 299.99574 * 4 2 1 32 32 H 1.08998 * 113.61977 * 254.52635 * 8 6 5 33 33 H 1.08998 * 113.61693 * 25.43845 * 8 6 5 34 34 H 0.97002 * 120.00093 * 72.49888 * 11 9 8 35 35 H 1.07998 * 119.55528 * 179.97438 * 14 13 12 36 36 H 1.08999 * 109.46987 * 125.00445 * 16 15 14 37 37 H 0.96702 * 114.00106 * 60.00207 * 17 16 15 38 38 H 1.48497 * 110.00060 * 179.97438 * 18 16 15 39 39 H 1.48503 * 109.99469 * 301.31725 * 18 16 15 40 40 H 1.08001 * 120.75683 * 180.02562 * 19 15 14 41 41 H 1.09004 * 113.61750 * 334.57260 * 22 6 5 42 42 H 1.09006 * 113.61568 * 105.38774 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 8 2.0064 -0.6737 -1.1668 6 6 1.5847 -0.0773 -2.3951 7 1 0.7236 0.5797 -2.2729 8 6 2.7334 0.5529 -3.2001 9 6 2.0562 -0.0128 -4.4596 10 1 1.3246 0.6628 -4.9028 11 7 3.0001 -0.5542 -5.4405 12 6 3.2427 0.1335 -6.6256 13 7 2.6175 1.2758 -6.8610 14 6 2.8194 1.9597 -7.9719 15 6 3.6969 1.5046 -8.9347 16 6 3.9171 2.2955 -10.1984 17 8 3.4482 1.5430 -11.3191 18 14 2.9824 3.9038 -10.0954 19 6 4.3744 0.3097 -8.7281 20 6 4.1465 -0.3836 -7.5516 21 9 4.7880 -1.5471 -7.3068 22 6 1.4333 -1.0834 -3.5482 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.6768 1.9562 0.8900 27 1 3.1300 1.4424 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 -1.7489 1.2492 30 1 3.1300 -0.7217 1.2490 31 1 1.6767 -0.2075 2.1393 32 1 2.7463 1.6421 -3.1632 33 1 3.7072 0.1097 -2.9916 34 1 3.4558 -1.3921 -5.2639 35 1 2.2906 2.8881 -8.1295 36 1 4.9809 2.5005 -10.3179 37 1 2.5071 1.3241 -11.2799 38 1 3.1919 4.6934 -11.3354 39 1 1.5344 3.6380 -9.9004 40 1 5.0667 -0.0675 -9.4662 41 1 2.0515 -1.9739 -3.4348 42 1 0.3965 -1.3161 -3.7913 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_11572882_17656566.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:23:02 Heat of formation + Delta-G solvation = -49.226003 kcal Electronic energy + Delta-G solvation = -24154.996757 eV Core-core repulsion = 20438.478362 eV Total energy + Delta-G solvation = -3716.518395 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 297.153 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.97184 -41.53743 -40.79354 -38.78173 -37.91024 -35.46952 -33.69598 -33.18250 -31.17100 -28.44353 -28.33866 -26.81605 -26.61859 -25.62624 -24.03301 -22.89897 -21.13593 -20.80459 -19.26350 -18.68486 -18.36883 -17.74780 -17.51755 -17.03785 -16.76281 -16.21945 -16.03302 -15.90313 -15.72741 -15.49518 -14.99743 -14.91874 -14.36281 -14.33031 -14.17506 -14.01511 -13.52114 -13.45703 -13.27821 -13.15717 -12.85725 -12.71595 -12.68404 -12.65152 -12.29095 -12.07354 -11.98935 -11.82327 -11.29197 -11.18473 -10.77284 -10.65227 -10.54313 -10.38396 -8.78205 -4.88066 -0.09546 0.08918 1.32046 1.62938 1.92739 1.99978 2.51267 2.76733 3.02080 3.29090 3.43904 3.49734 3.56443 3.60245 3.83205 3.84790 3.87710 3.91992 3.98823 3.99750 4.11270 4.33076 4.42757 4.52177 4.63772 4.66717 4.69927 4.73370 4.74116 4.79316 4.82689 4.91240 4.93596 4.98003 4.99376 5.02605 5.09485 5.20222 5.34192 5.35195 5.44182 5.96379 6.16368 6.41084 6.50760 6.92720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.098 3.902 3 C -0.174 4.174 4 C -0.140 4.140 5 O -0.380 6.380 6 C 0.066 3.934 7 H 0.106 0.894 8 C -0.163 4.163 9 C 0.142 3.858 10 H 0.121 0.879 11 N -0.702 5.702 12 C 0.382 3.618 13 N -0.525 5.525 14 C 0.147 3.853 15 C -0.203 4.203 16 C -0.069 4.069 17 O -0.549 6.549 18 Si 0.766 3.234 19 C -0.039 4.039 20 C -0.039 4.039 21 F -0.142 7.142 22 C -0.143 4.143 23 H 0.065 0.935 24 H 0.077 0.923 25 H 0.059 0.941 26 H 0.075 0.925 27 H 0.055 0.945 28 H 0.062 0.938 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.084 0.916 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.415 0.585 35 H 0.184 0.816 36 H 0.128 0.872 37 H 0.387 0.613 38 H -0.301 1.301 39 H -0.274 1.274 40 H 0.155 0.845 41 H 0.089 0.911 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.966 3.270 2.809 4.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.060 3.940 3 C -0.231 4.231 4 C -0.197 4.197 5 O -0.299 6.299 6 C 0.008 3.992 7 H 0.123 0.877 8 C -0.203 4.203 9 C 0.036 3.964 10 H 0.139 0.861 11 N -0.334 5.334 12 C 0.144 3.856 13 N -0.242 5.242 14 C -0.010 4.010 15 C -0.208 4.208 16 C -0.178 4.178 17 O -0.357 6.357 18 Si 0.671 3.329 19 C -0.066 4.066 20 C -0.065 4.065 21 F -0.121 7.121 22 C -0.181 4.181 23 H 0.084 0.916 24 H 0.096 0.904 25 H 0.078 0.922 26 H 0.094 0.906 27 H 0.074 0.926 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.103 0.897 32 H 0.095 0.905 33 H 0.097 0.903 34 H 0.253 0.747 35 H 0.200 0.800 36 H 0.146 0.854 37 H 0.236 0.764 38 H -0.229 1.229 39 H -0.200 1.200 40 H 0.172 0.828 41 H 0.107 0.893 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -2.542 3.983 3.084 5.642 hybrid contribution 0.375 -1.818 -1.095 2.155 sum -2.166 2.165 1.989 3.652 Atomic orbital electron populations 1.22454 0.94853 1.02799 1.03343 1.21681 0.93761 0.92486 0.86097 1.22441 1.01736 0.95722 1.03203 1.21799 1.01578 1.00802 0.95535 1.88013 1.74235 1.54184 1.13506 1.23413 0.97183 0.95660 0.82957 0.87652 1.23993 0.99369 1.01393 0.95498 1.22186 0.91545 0.96484 0.86169 0.86111 1.44604 1.47317 1.25523 1.15975 1.18603 0.89949 0.89922 0.87112 1.67336 1.26959 1.06465 1.23417 1.22758 0.93266 0.97936 0.87067 1.20903 1.02077 0.97907 0.99916 1.25057 1.07397 1.02582 0.82763 1.86589 1.31157 1.74448 1.43522 0.94113 0.78061 0.75835 0.84918 1.21452 0.97496 0.93392 0.94226 1.18164 1.02168 0.87722 0.98494 1.91467 1.80432 1.45674 1.94530 1.23620 1.02557 0.98164 0.93754 0.91630 0.90401 0.92228 0.90565 0.92562 0.91867 0.92333 0.92493 0.89715 0.90487 0.90274 0.74714 0.79992 0.85413 0.76407 1.22911 1.19979 0.82774 0.89269 0.89377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 0.42 8.38 71.98 0.60 1.02 16 2 C 0.10 -0.01 1.11 -10.79 -0.01 -0.02 16 3 C -0.17 0.30 8.38 71.98 0.60 0.90 16 4 C -0.14 0.08 8.84 71.98 0.64 0.71 16 5 O -0.38 -1.23 10.00 -148.98 -1.49 -2.72 16 6 C 0.07 -0.05 2.82 31.12 0.09 0.04 16 7 H 0.11 -0.34 5.54 -2.39 -0.01 -0.35 16 8 C -0.16 0.03 7.71 31.12 0.24 0.27 16 9 C 0.14 -0.08 4.27 45.52 0.19 0.12 16 10 H 0.12 -0.02 7.41 -2.38 -0.02 -0.04 16 11 N -0.70 -1.05 5.51 -321.78 -1.77 -2.83 16 12 C 0.38 1.49 7.49 133.08 1.00 2.49 16 13 N -0.52 -1.56 9.13 -193.03 -1.76 -3.32 16 14 C 0.15 -0.12 9.84 84.61 0.83 0.71 16 15 C -0.20 0.20 5.36 -19.77 -0.11 0.09 16 16 C -0.07 0.19 2.82 71.23 0.20 0.39 16 17 O -0.55 -0.36 12.84 -148.98 -1.91 -2.28 16 18 Si 0.77 -3.48 29.91 68.60 2.05 -1.43 16 19 C -0.04 -0.07 9.82 22.48 0.22 0.16 16 20 C -0.04 -0.17 7.35 22.59 0.17 0.00 16 21 F -0.14 -0.87 16.65 44.97 0.75 -0.12 16 22 C -0.14 0.20 7.66 31.12 0.24 0.44 16 23 H 0.06 -0.23 6.24 -2.39 -0.01 -0.25 16 24 H 0.08 -0.33 8.14 -2.39 -0.02 -0.35 16 25 H 0.06 -0.06 8.14 -2.38 -0.02 -0.08 16 26 H 0.08 -0.28 8.14 -2.39 -0.02 -0.30 16 27 H 0.06 0.01 8.14 -2.39 -0.02 -0.01 16 28 H 0.06 -0.16 7.02 -2.39 -0.02 -0.17 16 29 H 0.06 0.03 8.14 -2.39 -0.02 0.01 16 30 H 0.06 0.05 8.14 -2.39 -0.02 0.03 16 31 H 0.08 -0.30 8.14 -2.39 -0.02 -0.32 16 32 H 0.08 -0.05 8.14 -2.39 -0.02 -0.07 16 33 H 0.08 0.21 8.14 -2.39 -0.02 0.19 16 34 H 0.41 0.15 8.20 -92.71 -0.76 -0.61 16 35 H 0.18 -1.05 4.84 -2.91 -0.01 -1.07 16 36 H 0.13 -0.58 7.96 -2.39 -0.02 -0.60 16 37 H 0.39 -1.88 8.70 -74.06 -0.64 -2.52 16 38 H -0.30 -1.08 7.11 99.48 0.71 -0.37 16 39 H -0.27 0.44 7.01 99.48 0.70 1.13 16 40 H 0.15 -0.01 8.06 -2.91 -0.02 -0.03 16 41 H 0.09 -0.01 8.12 -2.39 -0.02 -0.03 16 42 H 0.09 -0.26 8.14 -2.38 -0.02 -0.28 16 Total: 0.00 -11.88 343.52 0.43 -11.45 By element: Atomic # 1 Polarization: -5.74 SS G_CDS: -0.33 Total: -6.08 kcal Atomic # 6 Polarization: 2.42 SS G_CDS: 4.90 Total: 7.32 kcal Atomic # 7 Polarization: -2.61 SS G_CDS: -3.53 Total: -6.15 kcal Atomic # 8 Polarization: -1.59 SS G_CDS: -3.40 Total: -5.00 kcal Atomic # 9 Polarization: -0.87 SS G_CDS: 0.75 Total: -0.12 kcal Atomic # 14 Polarization: -3.48 SS G_CDS: 2.05 Total: -1.43 kcal Total: -11.88 0.43 -11.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_11572882_17656566.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.776 kcal (2) G-P(sol) polarization free energy of solvation -11.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -11.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds