Wall clock time and date at job start Mon Mar 8 2021 05:18:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 H 1.00894 * 109.47482 * 2 1 4 4 C 1.46908 * 109.46829 * 119.99370 * 2 1 3 5 5 C 1.46900 * 109.47199 * 239.99347 * 2 1 3 6 6 H 1.09002 * 112.85077 * 311.19714 * 5 2 1 7 7 C 1.53956 * 113.66524 * 82.44203 * 5 2 1 8 8 C 1.53779 * 87.02051 * 139.93206 * 7 5 2 9 9 H 1.08994 * 113.61479 * 89.22577 * 8 7 5 10 10 C 1.53002 * 113.61646 * 220.04939 * 8 7 5 11 11 N 1.46491 * 109.46925 * 274.13731 * 10 8 7 12 12 C 1.39003 * 120.00072 * 179.97438 * 11 10 8 13 13 N 1.32399 * 119.71135 * 179.72492 * 12 11 10 14 14 C 1.31971 * 121.62708 * 180.28444 * 13 12 11 15 15 C 1.38023 * 120.85419 * 359.97438 * 14 13 12 16 16 C 1.50697 * 120.33303 * 180.02562 * 15 14 13 17 17 O 1.42896 * 109.46922 * 119.98099 * 16 15 14 18 18 Si 1.86300 * 109.47138 * 359.97438 * 16 15 14 19 19 C 1.38882 * 119.33171 * 0.02562 * 15 14 13 20 20 C 1.38298 * 118.50573 * 359.97438 * 19 15 14 21 21 C 1.53776 * 113.61309 * 180.02562 * 5 2 1 22 22 H 1.09006 * 109.47358 * 300.00233 * 1 2 3 23 23 H 1.08999 * 109.47032 * 60.00632 * 1 2 3 24 24 H 1.09004 * 109.47419 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46843 * 179.97438 * 4 2 1 26 26 H 1.08993 * 109.47517 * 300.00022 * 4 2 1 27 27 H 1.09004 * 109.46818 * 60.00633 * 4 2 1 28 28 H 1.08998 * 113.61253 * 25.41312 * 7 5 2 29 29 H 1.08997 * 113.66765 * 254.46060 * 7 5 2 30 30 H 1.09005 * 109.46871 * 154.13419 * 10 8 7 31 31 H 1.09006 * 109.46689 * 34.13916 * 10 8 7 32 32 H 0.96998 * 120.00358 * 359.97438 * 11 10 8 33 33 H 1.07997 * 119.57222 * 180.02562 * 14 13 12 34 34 H 1.09000 * 109.47466 * 239.98634 * 16 15 14 35 35 H 0.96699 * 114.00253 * 300.00281 * 17 16 15 36 36 H 1.48505 * 110.00161 * 58.67885 * 18 16 15 37 37 H 1.48501 * 110.00052 * 179.97438 * 18 16 15 38 38 H 1.07999 * 120.74907 * 179.97438 * 19 15 14 39 39 H 1.07999 * 120.45548 * 179.97438 * 20 19 15 40 40 H 1.08995 * 113.62070 * 105.47229 * 21 5 2 41 41 H 1.09006 * 113.61895 * 334.56820 * 21 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 1 1.8053 0.9512 0.0000 4 6 1.9586 -0.6924 1.1996 5 6 1.9586 -0.6926 -1.1994 6 1 1.4760 -1.6570 -1.3579 7 6 1.9898 0.1956 -2.4565 8 6 3.3294 -0.4767 -2.8004 9 1 3.2228 -1.3818 -3.3982 10 6 4.3727 0.4892 -3.3655 11 7 4.1856 0.6181 -4.8127 12 6 5.0215 1.4483 -5.5504 13 7 4.8507 1.5563 -6.8589 14 6 5.6256 2.3289 -7.5965 15 6 6.6490 3.0575 -7.0247 16 6 7.5265 3.9365 -7.8781 17 8 7.4219 5.2901 -7.4323 18 14 6.9782 3.8235 -9.6550 19 6 6.8619 2.9722 -5.6549 20 6 6.0338 2.1544 -4.9079 21 6 3.4924 -0.7487 -1.2952 22 1 -0.3634 0.5139 0.8900 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 3.0486 -0.6928 1.1994 26 1 1.5953 -0.1786 2.0895 27 1 1.5953 -1.7201 1.1996 28 1 2.0788 1.2595 -2.2372 29 1 1.1947 -0.0258 -3.1684 30 1 5.3720 0.1049 -3.1611 31 1 4.2558 1.4658 -2.8955 32 1 3.4784 0.1241 -5.2562 33 1 5.4564 2.3926 -8.6612 34 1 8.5619 3.6058 -7.7958 35 1 6.5260 5.6511 -7.4778 36 1 5.5583 4.2413 -9.7759 37 1 7.8354 4.6864 -10.5069 38 1 7.6562 3.5320 -5.1837 39 1 6.1714 2.0644 -3.8405 40 1 3.9083 -1.7310 -1.0714 41 1 3.9933 0.0566 -0.7577 There are 49 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 49 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_11760414_13915762.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:18:01 Heat of formation + Delta-G solvation = 144.065855 kcal Electronic energy + Delta-G solvation = -19889.804224 eV Core-core repulsion = 16890.722110 eV Total energy + Delta-G solvation = -2999.082114 eV No. of doubly occupied orbitals = 49 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 265.166 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.58319 -41.38590 -38.83875 -38.02495 -36.13926 -33.48921 -31.81567 -29.64699 -29.13814 -26.84201 -26.52893 -25.75688 -24.89017 -23.64927 -22.41003 -21.30845 -18.77862 -18.68587 -18.49768 -17.97660 -17.35331 -17.12798 -16.63919 -16.47885 -16.32634 -15.65624 -15.46109 -15.39018 -14.47513 -14.41871 -14.05461 -13.87787 -13.78872 -13.65869 -13.55641 -13.39856 -13.23391 -13.14646 -12.86203 -12.51374 -12.17154 -12.11927 -11.80563 -11.62011 -11.14262 -10.76893 -10.58948 -10.43481 -8.71369 -4.96559 0.19496 0.37675 0.98478 1.29461 1.53995 1.94055 2.09674 2.58886 2.80786 2.88562 2.97300 3.40426 3.41079 3.47487 3.57563 3.60730 3.70141 3.74915 4.00741 4.06805 4.10630 4.19046 4.24406 4.32707 4.36234 4.36769 4.43525 4.54221 4.56231 4.66965 4.72778 4.74841 4.77026 4.81739 4.84726 4.89897 4.97841 5.01009 5.23989 5.29495 5.49421 6.04352 6.46002 6.50600 7.13691 Molecular weight = 265.17amu Principal moments of inertia in cm(-1) A = 0.046444 B = 0.003331 C = 0.003277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.738099 B = 8404.107041 C = 8542.734055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.365 5.365 3 H 0.436 0.564 4 C -0.049 4.049 5 C 0.020 3.980 6 H 0.167 0.833 7 C -0.143 4.143 8 C -0.123 4.123 9 H 0.104 0.896 10 C 0.130 3.870 11 N -0.721 5.721 12 C 0.393 3.607 13 N -0.567 5.567 14 C 0.144 3.856 15 C -0.234 4.234 16 C -0.060 4.060 17 O -0.549 6.549 18 Si 0.748 3.252 19 C -0.016 4.016 20 C -0.235 4.235 21 C -0.131 4.131 22 H 0.127 0.873 23 H 0.118 0.882 24 H 0.119 0.881 25 H 0.123 0.877 26 H 0.128 0.872 27 H 0.119 0.881 28 H 0.115 0.885 29 H 0.092 0.908 30 H 0.066 0.934 31 H 0.081 0.919 32 H 0.407 0.593 33 H 0.161 0.839 34 H 0.124 0.876 35 H 0.385 0.615 36 H -0.283 1.283 37 H -0.308 1.308 38 H 0.143 0.857 39 H 0.158 0.842 40 H 0.102 0.898 41 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.404 -10.990 25.332 31.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 N 0.057 4.943 3 H 0.273 0.727 4 C -0.191 4.191 5 C -0.083 4.083 6 H 0.184 0.816 7 C -0.181 4.181 8 C -0.142 4.142 9 H 0.122 0.878 10 C 0.006 3.994 11 N -0.354 5.354 12 C 0.156 3.844 13 N -0.285 5.285 14 C -0.012 4.012 15 C -0.239 4.239 16 C -0.170 4.170 17 O -0.356 6.356 18 Si 0.655 3.345 19 C -0.042 4.042 20 C -0.260 4.260 21 C -0.169 4.169 22 H 0.146 0.854 23 H 0.137 0.863 24 H 0.138 0.862 25 H 0.142 0.858 26 H 0.146 0.854 27 H 0.138 0.862 28 H 0.133 0.867 29 H 0.111 0.889 30 H 0.084 0.916 31 H 0.099 0.901 32 H 0.243 0.757 33 H 0.177 0.823 34 H 0.142 0.858 35 H 0.234 0.766 36 H -0.209 1.209 37 H -0.237 1.237 38 H 0.160 0.840 39 H 0.175 0.825 40 H 0.120 0.880 41 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -15.816 -11.397 24.599 31.387 hybrid contribution 0.159 1.588 0.181 1.606 sum -15.657 -9.809 24.780 30.910 Atomic orbital electron populations 1.24085 0.75856 1.09493 1.09448 1.45019 1.15980 1.18968 1.14291 0.72678 1.24115 1.05806 1.02545 0.86614 1.24955 0.98452 1.00832 0.84042 0.81563 1.23665 0.98337 1.00420 0.95632 1.22551 0.94872 0.99345 0.97478 0.87791 1.21642 0.99788 1.00008 0.77924 1.44570 1.35162 1.48009 1.07616 1.18697 0.88907 0.88915 0.87897 1.67155 1.31075 1.23929 1.06301 1.22370 0.89419 0.90163 0.99286 1.20918 1.01608 1.04997 0.96389 1.24791 1.03793 0.81512 1.06924 1.86578 1.35422 1.26834 1.86814 0.94353 0.76479 0.89987 0.73724 1.21421 0.96645 0.93527 0.92613 1.21641 0.98929 1.03151 1.02261 1.23496 0.92391 1.06498 0.94564 0.85422 0.86298 0.86199 0.85838 0.85400 0.86249 0.86651 0.88937 0.91614 0.90131 0.75715 0.82282 0.85821 0.76613 1.20944 1.23667 0.83962 0.82469 0.87977 0.85881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 2.94 9.15 127.69 1.17 4.11 16 2 N -0.37 23.91 0.62 -919.79 -0.57 23.34 16 3 H 0.44 -30.04 8.20 -89.70 -0.74 -30.78 16 4 C -0.05 3.11 8.99 127.69 1.15 4.26 16 5 C 0.02 -1.19 2.92 45.50 0.13 -1.05 16 6 H 0.17 -10.10 8.11 -2.39 -0.02 -10.12 16 7 C -0.14 7.61 7.13 31.18 0.22 7.84 16 8 C -0.12 5.84 3.75 -10.25 -0.04 5.80 16 9 H 0.10 -4.59 8.14 -2.39 -0.02 -4.61 16 10 C 0.13 -5.07 4.72 86.38 0.41 -4.66 16 11 N -0.72 20.91 5.73 -345.07 -1.98 18.94 16 12 C 0.39 -7.84 7.65 133.07 1.02 -6.82 16 13 N -0.57 7.98 10.39 -193.26 -2.01 5.97 16 14 C 0.14 -2.08 9.84 84.62 0.83 -1.25 16 15 C -0.23 3.64 5.40 -19.76 -0.11 3.53 16 16 C -0.06 0.88 2.84 71.24 0.20 1.08 16 17 O -0.55 6.40 12.78 -148.98 -1.90 4.50 16 18 Si 0.75 -10.43 29.82 68.60 2.05 -8.38 16 19 C -0.02 0.29 9.77 22.44 0.22 0.51 16 20 C -0.24 5.08 9.33 22.50 0.21 5.29 16 21 C -0.13 7.23 6.15 31.13 0.19 7.42 16 22 H 0.13 -8.01 8.14 -2.38 -0.02 -8.02 16 23 H 0.12 -7.30 8.01 -2.39 -0.02 -7.32 16 24 H 0.12 -7.39 8.13 -2.38 -0.02 -7.41 16 25 H 0.12 -7.77 7.13 -2.39 -0.02 -7.79 16 26 H 0.13 -8.09 8.14 -2.39 -0.02 -8.11 16 27 H 0.12 -7.41 8.14 -2.38 -0.02 -7.43 16 28 H 0.12 -6.33 7.72 -2.39 -0.02 -6.35 16 29 H 0.09 -4.61 8.14 -2.39 -0.02 -4.63 16 30 H 0.07 -2.43 7.93 -2.38 -0.02 -2.45 16 31 H 0.08 -3.36 7.66 -2.38 -0.02 -3.37 16 32 H 0.41 -11.93 8.60 -92.71 -0.80 -12.72 16 33 H 0.16 -2.66 4.88 -2.91 -0.01 -2.67 16 34 H 0.12 -1.99 7.96 -2.39 -0.02 -2.00 16 35 H 0.38 -6.56 8.70 -74.06 -0.64 -7.21 16 36 H -0.28 2.87 7.11 99.48 0.71 3.58 16 37 H -0.31 1.47 7.11 99.48 0.71 2.17 16 38 H 0.14 -2.76 8.06 -2.91 -0.02 -2.78 16 39 H 0.16 -4.44 6.71 -2.91 -0.02 -4.46 16 40 H 0.10 -5.38 8.14 -2.39 -0.02 -5.40 16 41 H 0.12 -7.12 8.00 -2.38 -0.02 -7.14 16 Total: 1.00 -76.72 325.82 0.09 -76.63 By element: Atomic # 1 Polarization: -145.93 SS G_CDS: -1.11 Total: -147.03 kcal Atomic # 6 Polarization: 20.43 SS G_CDS: 5.61 Total: 26.04 kcal Atomic # 7 Polarization: 52.81 SS G_CDS: -4.55 Total: 48.25 kcal Atomic # 8 Polarization: 6.40 SS G_CDS: -1.90 Total: 4.50 kcal Atomic # 14 Polarization: -10.43 SS G_CDS: 2.05 Total: -8.38 kcal Total: -76.72 0.09 -76.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_11760414_13915762.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 220.697 kcal (2) G-P(sol) polarization free energy of solvation -76.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 143.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.631 kcal (6) G-S(sol) free energy of system = (1) + (5) 144.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds