Wall clock time and date at job start Mon Mar 8 2021 05:18:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 H 1.00899 * 109.47532 * 2 1 4 4 C 1.46901 * 109.47232 * 119.99896 * 2 1 3 5 5 C 1.46896 * 109.47178 * 240.00168 * 2 1 3 6 6 H 1.09004 * 112.90999 * 311.24965 * 5 2 1 7 7 C 1.53782 * 113.61715 * 82.50194 * 5 2 1 8 8 C 1.53784 * 87.08164 * 139.98300 * 7 5 2 9 9 H 1.08997 * 113.69084 * 89.12990 * 8 7 5 10 10 C 1.53000 * 113.61296 * 220.02004 * 8 7 5 11 11 N 1.46505 * 109.46745 * 272.49696 * 10 8 7 12 12 C 1.38614 * 119.99334 * 180.02562 * 11 10 8 13 13 N 1.29679 * 124.95406 * 359.97438 * 12 11 10 14 14 C 1.32127 * 116.87020 * 180.02562 * 13 12 11 15 15 C 1.33324 * 114.57515 * 359.97438 * 14 13 12 16 16 C 1.50699 * 125.95145 * 179.97438 * 15 14 13 17 17 O 1.42903 * 109.47152 * 65.00365 * 16 15 14 18 18 Si 1.86305 * 109.47184 * 184.99837 * 16 15 14 19 19 S 1.70974 * 124.94563 * 180.33262 * 12 11 10 20 20 C 1.53781 * 87.08205 * 334.56839 * 8 7 5 21 21 H 1.08998 * 109.47100 * 180.02562 * 1 2 3 22 22 H 1.08998 * 109.46943 * 299.99883 * 1 2 3 23 23 H 1.08998 * 109.46768 * 59.99846 * 1 2 3 24 24 H 1.08999 * 109.47217 * 179.97438 * 4 2 1 25 25 H 1.08998 * 109.47337 * 299.99979 * 4 2 1 26 26 H 1.08992 * 109.47038 * 60.00217 * 4 2 1 27 27 H 1.08996 * 113.61308 * 25.42964 * 7 5 2 28 28 H 1.09006 * 113.61229 * 254.52899 * 7 5 2 29 29 H 1.08998 * 109.46952 * 152.49819 * 10 8 7 30 30 H 1.08995 * 109.47412 * 32.49315 * 10 8 7 31 31 H 0.96995 * 120.00214 * 359.97438 * 11 10 8 32 32 H 1.07994 * 122.71368 * 179.97438 * 14 13 12 33 33 H 1.08997 * 109.47198 * 305.00043 * 16 15 14 34 34 H 0.96700 * 114.00311 * 180.02562 * 17 16 15 35 35 H 1.48497 * 110.00233 * 300.00062 * 18 16 15 36 36 H 1.48492 * 109.99800 * 61.32455 * 18 16 15 37 37 H 1.08998 * 113.61680 * 139.98064 * 20 8 7 38 38 H 1.08996 * 113.61428 * 270.88846 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 1 1.8054 0.9513 0.0000 4 6 1.9587 -0.6925 1.1995 5 6 1.9587 -0.6924 -1.1994 6 1 1.4760 -1.6566 -1.3596 7 6 1.9907 0.1963 -2.4540 8 6 3.3294 -0.4765 -2.8005 9 1 3.2228 -1.3815 -3.3985 10 6 4.3727 0.4895 -3.3655 11 7 4.2087 0.5904 -4.8179 12 6 5.0473 1.4124 -5.5545 13 7 6.0048 2.1327 -5.0586 14 6 6.7070 2.8600 -5.9094 15 6 6.3248 2.7479 -7.1817 16 6 6.9437 3.4593 -8.3573 17 8 8.2889 3.0096 -8.5319 18 14 5.9604 3.0881 -9.8956 19 16 4.9641 1.6310 -7.2481 20 6 3.4925 -0.7481 -1.2957 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 3.0487 -0.6929 1.1992 25 1 1.5954 -0.1787 2.0894 26 1 1.5954 -1.7201 1.1994 27 1 2.0807 1.2599 -2.2334 28 1 1.1945 -0.0236 -3.1653 29 1 5.3720 0.1190 -3.1375 30 1 4.2384 1.4732 -2.9157 31 1 3.5140 0.0814 -5.2641 32 1 7.5244 3.4939 -5.5992 33 1 6.9406 4.5338 -8.1746 34 1 8.7500 3.4267 -9.2725 35 1 5.9570 1.6261 -10.1559 36 1 4.5679 3.5795 -9.7391 37 1 3.9087 -1.7303 -1.0718 38 1 3.9931 0.0574 -0.7584 There are 47 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 47 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_11760414_15704118.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:18:05 Heat of formation + Delta-G solvation = 153.590637 kcal Electronic energy + Delta-G solvation = -18503.574145 eV Core-core repulsion = 15594.057303 eV Total energy + Delta-G solvation = -2909.516842 eV No. of doubly occupied orbitals = 47 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 271.122 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.62832 -40.85295 -38.82286 -37.82343 -36.24491 -31.84381 -29.67842 -29.59700 -26.96606 -26.56560 -26.23195 -24.59485 -23.61589 -21.55470 -20.79158 -19.78803 -18.57127 -18.47124 -17.96656 -17.59053 -17.17707 -16.78046 -16.24274 -16.19134 -15.68706 -15.51925 -14.80277 -14.60460 -14.32656 -13.93193 -13.88317 -13.70577 -13.58398 -13.31852 -13.18087 -12.95138 -12.93117 -12.60349 -12.29136 -12.17944 -11.89013 -11.70433 -11.24122 -10.85751 -10.46228 -10.28265 -8.90372 -5.20613 -0.24116 -0.06482 0.46778 0.95620 1.19916 1.51542 1.79808 1.85213 2.00172 2.53794 2.84912 2.92516 3.33545 3.37213 3.49282 3.53964 3.59488 3.69064 3.93910 4.02210 4.17130 4.20653 4.28414 4.34862 4.38691 4.42674 4.49578 4.57789 4.63712 4.68578 4.71649 4.79642 4.82035 4.82372 4.91058 4.95666 5.19837 5.66892 5.99449 6.78507 6.85917 Molecular weight = 271.12amu Principal moments of inertia in cm(-1) A = 0.048873 B = 0.003472 C = 0.003362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.781700 B = 8062.510413 C = 8326.972739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.366 5.366 3 H 0.435 0.565 4 C -0.049 4.049 5 C 0.023 3.977 6 H 0.172 0.828 7 C -0.142 4.142 8 C -0.124 4.124 9 H 0.112 0.888 10 C 0.141 3.859 11 N -0.682 5.682 12 C 0.327 3.673 13 N -0.567 5.567 14 C 0.109 3.891 15 C -0.273 4.273 16 C -0.024 4.024 17 O -0.565 6.565 18 Si 0.746 3.254 19 S 0.047 5.953 20 C -0.134 4.134 21 H 0.121 0.879 22 H 0.127 0.873 23 H 0.120 0.880 24 H 0.120 0.880 25 H 0.128 0.872 26 H 0.121 0.879 27 H 0.113 0.887 28 H 0.100 0.900 29 H 0.054 0.946 30 H 0.073 0.927 31 H 0.425 0.575 32 H 0.187 0.813 33 H 0.105 0.895 34 H 0.405 0.595 35 H -0.285 1.285 36 H -0.272 1.272 37 H 0.103 0.897 38 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.670 -5.617 21.438 27.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 N 0.056 4.944 3 H 0.272 0.728 4 C -0.191 4.191 5 C -0.079 4.079 6 H 0.189 0.811 7 C -0.180 4.180 8 C -0.144 4.144 9 H 0.130 0.870 10 C 0.016 3.984 11 N -0.323 5.323 12 C -0.045 4.045 13 N -0.294 5.294 14 C -0.041 4.041 15 C -0.395 4.395 16 C -0.137 4.137 17 O -0.375 6.375 18 Si 0.650 3.350 19 S 0.295 5.705 20 C -0.172 4.172 21 H 0.140 0.860 22 H 0.146 0.854 23 H 0.138 0.862 24 H 0.139 0.861 25 H 0.147 0.853 26 H 0.140 0.860 27 H 0.131 0.869 28 H 0.119 0.881 29 H 0.072 0.928 30 H 0.091 0.909 31 H 0.264 0.736 32 H 0.204 0.796 33 H 0.123 0.877 34 H 0.257 0.743 35 H -0.211 1.211 36 H -0.198 1.198 37 H 0.121 0.879 38 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -17.141 -7.072 21.606 28.472 hybrid contribution 0.874 0.582 0.199 1.069 sum -16.267 -6.490 21.805 27.968 Atomic orbital electron populations 1.24101 0.75632 1.09600 1.09517 1.45029 1.16132 1.18938 1.14253 0.72758 1.24111 1.05678 1.02639 0.86659 1.24902 0.98014 1.00969 0.84060 0.81064 1.23653 0.98086 1.00345 0.95894 1.22618 0.94787 0.99310 0.97660 0.87003 1.21544 0.99550 1.00006 0.77326 1.44141 1.34482 1.46208 1.07518 1.24016 0.93447 0.94461 0.92528 1.66464 1.10623 1.15226 1.37070 1.21568 0.98322 0.97030 0.87138 1.24603 1.05432 1.10334 0.99161 1.23810 0.88880 0.99709 1.01322 1.86457 1.24293 1.69622 1.57173 0.93919 0.78586 0.80342 0.82127 1.84277 1.34236 1.45397 1.06592 1.23488 0.92832 1.06360 0.94540 0.86029 0.85433 0.86167 0.86143 0.85330 0.86045 0.86874 0.88142 0.92771 0.90872 0.73617 0.79646 0.87722 0.74349 1.21141 1.19786 0.87886 0.86478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 2.90 9.15 127.69 1.17 4.07 16 2 N -0.37 23.52 0.62 -920.17 -0.57 22.95 16 3 H 0.44 -29.21 8.19 -89.69 -0.73 -29.95 16 4 C -0.05 3.04 8.99 127.69 1.15 4.19 16 5 C 0.02 -1.36 2.92 45.44 0.13 -1.23 16 6 H 0.17 -10.35 8.11 -2.38 -0.02 -10.37 16 7 C -0.14 7.43 7.12 31.12 0.22 7.65 16 8 C -0.12 5.63 3.75 -10.27 -0.04 5.59 16 9 H 0.11 -4.90 8.14 -2.39 -0.02 -4.92 16 10 C 0.14 -4.75 5.79 86.38 0.50 -4.25 16 11 N -0.68 18.13 5.71 -351.00 -2.01 16.13 16 12 C 0.33 -5.25 8.09 179.32 1.45 -3.80 16 13 N -0.57 6.71 10.14 -202.02 -2.05 4.66 16 14 C 0.11 -1.16 11.24 83.54 0.94 -0.22 16 15 C -0.27 2.84 5.76 24.57 0.14 2.99 16 16 C -0.02 0.34 2.98 71.24 0.21 0.56 16 17 O -0.57 7.58 12.86 -148.98 -1.92 5.67 16 18 Si 0.75 -10.96 31.06 68.60 2.13 -8.83 16 19 S 0.05 -0.58 20.59 -56.49 -1.16 -1.74 16 20 C -0.13 7.01 6.15 31.12 0.19 7.20 16 21 H 0.12 -7.48 8.13 -2.39 -0.02 -7.50 16 22 H 0.13 -7.92 8.14 -2.39 -0.02 -7.94 16 23 H 0.12 -7.35 8.00 -2.39 -0.02 -7.37 16 24 H 0.12 -7.33 7.13 -2.39 -0.02 -7.35 16 25 H 0.13 -7.98 8.14 -2.39 -0.02 -8.00 16 26 H 0.12 -7.43 8.14 -2.39 -0.02 -7.45 16 27 H 0.11 -6.00 7.70 -2.39 -0.02 -6.02 16 28 H 0.10 -5.07 8.14 -2.38 -0.02 -5.09 16 29 H 0.05 -1.54 8.14 -2.39 -0.02 -1.56 16 30 H 0.07 -2.47 7.84 -2.39 -0.02 -2.49 16 31 H 0.42 -13.17 8.60 -92.71 -0.80 -13.97 16 32 H 0.19 -2.49 8.06 -2.91 -0.02 -2.52 16 33 H 0.11 -1.98 7.96 -2.39 -0.02 -2.00 16 34 H 0.40 -9.48 8.74 -74.06 -0.65 -10.12 16 35 H -0.28 2.04 7.11 99.48 0.71 2.75 16 36 H -0.27 2.77 7.11 99.48 0.71 3.48 16 37 H 0.10 -5.18 8.14 -2.39 -0.02 -5.20 16 38 H 0.12 -6.29 8.00 -2.39 -0.02 -6.31 16 Total: 1.00 -77.73 320.58 -0.58 -78.31 By element: Atomic # 1 Polarization: -138.82 SS G_CDS: -1.08 Total: -139.90 kcal Atomic # 6 Polarization: 16.68 SS G_CDS: 6.07 Total: 22.74 kcal Atomic # 7 Polarization: 48.36 SS G_CDS: -4.62 Total: 43.74 kcal Atomic # 8 Polarization: 7.58 SS G_CDS: -1.92 Total: 5.67 kcal Atomic # 14 Polarization: -10.96 SS G_CDS: 2.13 Total: -8.83 kcal Atomic # 16 Polarization: -0.58 SS G_CDS: -1.16 Total: -1.74 kcal Total: -77.73 -0.58 -78.31 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_11760414_15704118.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 231.905 kcal (2) G-P(sol) polarization free energy of solvation -77.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 154.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.314 kcal (6) G-S(sol) free energy of system = (1) + (5) 153.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds