Wall clock time and date at job start Mon Mar 8 2021 05:18:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33330 * 125.94995 * 2 1 4 4 C 1.50698 * 122.70970 * 359.96842 * 3 2 1 5 5 O 1.42899 * 109.47211 * 329.99295 * 4 3 2 6 6 Si 1.86298 * 109.46823 * 209.99520 * 4 3 2 7 7 N 1.32119 * 114.57801 * 179.78988 * 3 2 1 8 8 C 1.29689 * 116.86437 * 0.51639 * 7 3 2 9 9 N 1.38618 * 124.94915 * 179.71194 * 8 7 3 10 10 C 1.46502 * 119.99978 * 180.02562 * 9 8 7 11 11 C 1.53002 * 109.46820 * 180.02562 * 10 9 8 12 12 H 1.08994 * 112.84732 * 316.19496 * 11 10 9 13 13 C 1.53787 * 113.61148 * 185.00077 * 11 10 9 14 14 C 1.53784 * 87.07681 * 220.01680 * 13 11 10 15 15 H 1.08994 * 113.61079 * 270.88087 * 14 13 11 16 16 N 1.46902 * 113.60775 * 140.06441 * 14 13 11 17 17 H 1.00890 * 109.47667 * 299.99564 * 16 14 13 18 18 C 1.46900 * 109.47205 * 60.00119 * 16 14 13 19 19 C 1.46906 * 109.46695 * 179.97438 * 16 14 13 20 20 C 1.53775 * 113.61394 * 87.50116 * 11 10 9 21 21 S 1.70968 * 110.10458 * 359.72434 * 8 7 3 22 22 H 1.09002 * 109.47152 * 179.71292 * 1 2 3 23 23 H 1.09001 * 109.46980 * 59.71392 * 1 2 3 24 24 H 1.09004 * 109.47113 * 299.71373 * 1 2 3 25 25 H 1.09000 * 109.47546 * 89.99738 * 4 3 2 26 26 H 0.96701 * 114.00118 * 300.00202 * 5 4 3 27 27 H 1.48500 * 110.00352 * 179.97438 * 6 4 3 28 28 H 1.48497 * 110.00422 * 301.31670 * 6 4 3 29 29 H 0.96993 * 119.99650 * 0.03733 * 9 8 7 30 30 H 1.09003 * 109.46826 * 300.00580 * 10 9 8 31 31 H 1.09002 * 109.47007 * 60.00497 * 10 9 8 32 32 H 1.08998 * 113.61010 * 334.56604 * 13 11 10 33 33 H 1.08998 * 113.61208 * 105.38401 * 13 11 10 34 34 H 1.08997 * 109.46984 * 179.97438 * 18 16 14 35 35 H 1.09004 * 109.47063 * 299.99631 * 18 16 14 36 36 H 1.09003 * 109.46988 * 59.99699 * 18 16 14 37 37 H 1.09002 * 109.46970 * 60.00260 * 19 16 14 38 38 H 1.08997 * 109.47205 * 180.02562 * 19 16 14 39 39 H 1.09003 * 109.47133 * 300.00576 * 19 16 14 40 40 H 1.08997 * 113.61711 * 254.52675 * 20 11 10 41 41 H 1.08997 * 113.61770 * 25.43703 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2898 1.0793 0.0000 4 6 1.7414 2.4830 -0.0007 5 8 0.4817 2.5019 -0.6750 6 14 2.9327 3.6146 -0.8786 7 7 3.5850 0.8188 0.0044 8 6 3.9315 -0.4309 -0.0023 9 7 5.2385 -0.8926 -0.0049 10 6 5.5066 -2.3328 -0.0132 11 6 7.0181 -2.5702 -0.0138 12 1 7.5490 -1.9156 -0.7050 13 6 7.4089 -4.0517 -0.1451 14 6 8.5127 -3.7708 0.8882 15 1 9.4532 -3.4443 0.4445 16 7 8.6888 -4.8500 1.8691 17 1 7.8281 -4.9863 2.3775 18 6 9.0473 -6.0921 1.1715 19 6 9.7602 -4.4891 2.8071 20 6 7.6355 -2.6133 1.3939 21 16 2.5413 -1.4261 -0.0078 22 1 -0.3633 -1.0277 -0.0051 23 1 -0.3633 0.5183 -0.8874 24 1 -0.3633 0.5094 0.8926 25 1 1.6086 2.8218 1.0268 26 1 0.5244 2.2118 -1.5965 27 1 2.4033 5.0020 -0.8868 28 1 4.2561 3.5796 -0.2059 29 1 5.9755 -0.2620 -0.0011 30 1 5.0678 -2.7892 0.8742 31 1 5.0681 -2.7789 -0.9058 32 1 6.6416 -4.7389 0.2114 33 1 7.7896 -4.3171 -1.1314 34 1 9.1784 -6.8928 1.8993 35 1 8.2526 -6.3601 0.4752 36 1 9.9773 -5.9449 0.6222 37 1 9.4946 -3.5673 3.3248 38 1 9.8913 -5.2900 3.5347 39 1 10.6900 -4.3421 2.2576 40 1 8.2005 -1.7172 1.6505 41 1 6.9302 -2.9073 2.1712 There are 50 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 50 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_11760414_15704122.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:18:07 Heat of formation + Delta-G solvation = 150.630678 kcal Electronic energy + Delta-G solvation = -20475.862544 eV Core-core repulsion = 17410.679730 eV Total energy + Delta-G solvation = -3065.182815 eV No. of doubly occupied orbitals = 50 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 285.138 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.60292 -41.08513 -38.92550 -37.82769 -36.17191 -32.84631 -30.08263 -29.65217 -28.59367 -26.65614 -26.41165 -25.58563 -24.29284 -23.66244 -21.63287 -20.49946 -19.21775 -18.53248 -18.09993 -17.80405 -17.24533 -17.15242 -16.77854 -16.53517 -15.93553 -15.73238 -15.52921 -14.82023 -14.34337 -14.00890 -13.91597 -13.87300 -13.79688 -13.64828 -13.56068 -13.43958 -13.29421 -13.15503 -12.88353 -12.76646 -12.47248 -12.18710 -12.07633 -11.85862 -11.60602 -11.00341 -10.66764 -10.41436 -10.01695 -8.66116 -5.01306 -0.04119 0.13304 0.68099 0.97423 1.26136 1.69447 1.81595 1.93418 2.05650 2.56799 2.87268 2.94686 3.32814 3.38548 3.46456 3.53493 3.57349 3.64818 4.02137 4.13991 4.18639 4.21279 4.27689 4.28532 4.35724 4.39259 4.45395 4.52059 4.56401 4.68673 4.74178 4.81099 4.81732 4.84588 4.85391 4.88495 4.97555 5.03870 5.21572 5.30286 5.62091 6.26481 6.63237 6.93389 Molecular weight = 285.14amu Principal moments of inertia in cm(-1) A = 0.030853 B = 0.003555 C = 0.003318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.311140 B = 7874.328671 C = 8437.022601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C -0.251 4.251 3 C 0.055 3.945 4 C -0.033 4.033 5 O -0.542 6.542 6 Si 0.791 3.209 7 N -0.576 5.576 8 C 0.306 3.694 9 N -0.689 5.689 10 C 0.122 3.878 11 C -0.120 4.120 12 H 0.110 0.890 13 C -0.132 4.132 14 C 0.021 3.979 15 H 0.168 0.832 16 N -0.365 5.365 17 H 0.436 0.564 18 C -0.049 4.049 19 C -0.047 4.047 20 C -0.145 4.145 21 S 0.135 5.865 22 H 0.066 0.934 23 H 0.091 0.909 24 H 0.064 0.936 25 H 0.110 0.890 26 H 0.394 0.606 27 H -0.304 1.304 28 H -0.294 1.294 29 H 0.414 0.586 30 H 0.082 0.918 31 H 0.071 0.929 32 H 0.123 0.877 33 H 0.105 0.895 34 H 0.127 0.873 35 H 0.124 0.876 36 H 0.119 0.881 37 H 0.118 0.882 38 H 0.127 0.873 39 H 0.120 0.880 40 H 0.093 0.907 41 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.462 -23.645 4.731 32.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.374 4.374 3 C -0.075 4.075 4 C -0.146 4.146 5 O -0.350 6.350 6 Si 0.698 3.302 7 N -0.304 5.304 8 C -0.066 4.066 9 N -0.331 5.331 10 C -0.001 4.001 11 C -0.140 4.140 12 H 0.128 0.872 13 C -0.170 4.170 14 C -0.082 4.082 15 H 0.186 0.814 16 N 0.057 4.943 17 H 0.273 0.727 18 C -0.191 4.191 19 C -0.189 4.189 20 C -0.183 4.183 21 S 0.383 5.617 22 H 0.085 0.915 23 H 0.110 0.890 24 H 0.082 0.918 25 H 0.127 0.873 26 H 0.245 0.755 27 H -0.233 1.233 28 H -0.221 1.221 29 H 0.253 0.747 30 H 0.100 0.900 31 H 0.090 0.910 32 H 0.142 0.858 33 H 0.123 0.877 34 H 0.146 0.854 35 H 0.142 0.858 36 H 0.138 0.862 37 H 0.137 0.863 38 H 0.146 0.854 39 H 0.138 0.862 40 H 0.112 0.888 41 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 22.310 -23.637 5.226 32.921 hybrid contribution -0.533 1.316 0.770 1.615 sum 21.777 -22.321 5.996 31.756 Atomic orbital electron populations 1.20180 0.85947 1.02165 1.03748 1.25330 1.02011 0.93423 1.16645 1.20106 0.87039 0.97327 1.03058 1.24435 0.92635 0.95839 1.01722 1.86515 1.28382 1.89696 1.30359 0.93255 0.74216 0.74131 0.88607 1.65943 1.17557 1.18273 1.28595 1.23588 0.93283 0.91295 0.98406 1.44084 1.00516 1.08415 1.80040 1.21823 0.97316 0.77913 1.03013 1.22526 0.92968 0.99399 0.99073 0.87212 1.23510 0.96869 0.95719 1.00862 1.24905 1.03767 0.88118 0.91409 0.81440 1.45017 1.18940 1.14620 1.15691 0.72666 1.24121 1.07691 0.84887 1.02395 1.24089 0.91907 1.07519 0.95388 1.23667 0.98538 0.98635 0.97445 1.83597 0.95372 1.09012 1.73678 0.91537 0.89045 0.91762 0.87306 0.75533 1.23284 1.22056 0.74715 0.89973 0.91034 0.85838 0.87667 0.85425 0.85770 0.86209 0.86328 0.85428 0.86161 0.88837 0.86605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 0.97 8.92 71.24 0.64 1.60 16 2 C -0.25 3.65 6.50 24.58 0.16 3.81 16 3 C 0.05 -0.67 5.91 41.40 0.24 -0.42 16 4 C -0.03 0.38 2.94 71.24 0.21 0.59 16 5 O -0.54 7.21 10.17 -148.98 -1.51 5.70 16 6 Si 0.79 -8.82 32.09 68.60 2.20 -6.62 16 7 N -0.58 7.32 8.95 -189.85 -1.70 5.62 16 8 C 0.31 -5.99 8.24 179.32 1.48 -4.52 16 9 N -0.69 20.07 5.71 -350.98 -2.01 18.07 16 10 C 0.12 -4.80 5.37 86.38 0.46 -4.34 16 11 C -0.12 5.79 3.75 -10.27 -0.04 5.75 16 12 H 0.11 -4.99 8.14 -2.39 -0.02 -5.01 16 13 C -0.13 7.32 6.15 31.12 0.19 7.51 16 14 C 0.02 -1.25 2.91 45.44 0.13 -1.12 16 15 H 0.17 -10.28 8.11 -2.39 -0.02 -10.30 16 16 N -0.37 24.04 0.62 -920.12 -0.57 23.47 16 17 H 0.44 -30.18 8.20 -89.70 -0.74 -30.91 16 18 C -0.05 3.14 8.99 127.69 1.15 4.28 16 19 C -0.05 2.96 9.15 127.69 1.17 4.13 16 20 C -0.15 7.80 7.12 31.12 0.22 8.02 16 21 S 0.13 -2.77 22.32 -56.49 -1.26 -4.03 16 22 H 0.07 -1.16 8.14 -2.39 -0.02 -1.18 16 23 H 0.09 -1.58 6.37 -2.39 -0.02 -1.59 16 24 H 0.06 -0.84 8.14 -2.38 -0.02 -0.86 16 25 H 0.11 -1.09 7.96 -2.39 -0.02 -1.11 16 26 H 0.39 -8.19 8.13 -74.06 -0.60 -8.79 16 27 H -0.30 1.20 7.11 99.48 0.71 1.91 16 28 H -0.29 1.39 7.11 99.48 0.71 2.09 16 29 H 0.41 -12.34 8.60 -92.71 -0.80 -13.13 16 30 H 0.08 -3.39 7.84 -2.39 -0.02 -3.41 16 31 H 0.07 -2.67 8.14 -2.39 -0.02 -2.69 16 32 H 0.12 -7.20 8.00 -2.39 -0.02 -7.22 16 33 H 0.10 -5.65 8.14 -2.39 -0.02 -5.67 16 34 H 0.13 -8.11 8.14 -2.39 -0.02 -8.13 16 35 H 0.12 -7.87 7.14 -2.39 -0.02 -7.89 16 36 H 0.12 -7.48 8.14 -2.39 -0.02 -7.50 16 37 H 0.12 -7.30 8.01 -2.39 -0.02 -7.32 16 38 H 0.13 -8.02 8.14 -2.39 -0.02 -8.04 16 39 H 0.12 -7.45 8.13 -2.39 -0.02 -7.47 16 40 H 0.09 -4.70 8.14 -2.39 -0.02 -4.72 16 41 H 0.12 -6.40 7.70 -2.39 -0.02 -6.42 16 Total: 1.00 -77.95 337.50 0.10 -77.85 By element: Atomic # 1 Polarization: -144.31 SS G_CDS: -1.06 Total: -145.37 kcal Atomic # 6 Polarization: 19.30 SS G_CDS: 6.01 Total: 25.31 kcal Atomic # 7 Polarization: 51.44 SS G_CDS: -4.28 Total: 47.16 kcal Atomic # 8 Polarization: 7.21 SS G_CDS: -1.51 Total: 5.70 kcal Atomic # 14 Polarization: -8.82 SS G_CDS: 2.20 Total: -6.62 kcal Atomic # 16 Polarization: -2.77 SS G_CDS: -1.26 Total: -4.03 kcal Total: -77.95 0.10 -77.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_11760414_15704122.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 228.480 kcal (2) G-P(sol) polarization free energy of solvation -77.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 150.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.849 kcal (6) G-S(sol) free energy of system = (1) + (5) 150.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds