Wall clock time and date at job start Mon Mar 8 2021 05:18:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 H 1.00901 * 109.47021 * 2 1 4 4 C 1.46905 * 109.47189 * 119.99582 * 2 1 3 5 5 C 1.46902 * 109.47398 * 240.00026 * 2 1 3 6 6 H 1.08994 * 112.84717 * 311.20012 * 5 2 1 7 7 C 1.53957 * 113.74204 * 82.40139 * 5 2 1 8 8 C 1.53783 * 87.01875 * 139.94602 * 7 5 2 9 9 H 1.08990 * 113.61571 * 89.22675 * 8 7 5 10 10 C 1.53000 * 113.61182 * 220.05000 * 8 7 5 11 11 N 1.46499 * 109.46840 * 274.13267 * 10 8 7 12 12 C 1.39149 * 119.99974 * 179.97438 * 11 10 8 13 13 N 1.32333 * 119.71557 * 0.02562 * 12 11 10 14 14 C 1.32013 * 121.64531 * 179.97438 * 13 12 11 15 15 C 1.37987 * 120.89901 * 359.97438 * 14 13 12 16 16 C 1.50704 * 120.32360 * 179.97438 * 15 14 13 17 17 O 1.42896 * 109.47173 * 245.00254 * 16 15 14 18 18 Si 1.86301 * 109.47141 * 5.00539 * 16 15 14 19 19 C 1.38903 * 119.34787 * 0.02562 * 15 14 13 20 20 C 1.38442 * 118.48270 * 359.74504 * 19 15 14 21 21 F 1.35102 * 120.46883 * 180.26782 * 20 19 15 22 22 C 1.53778 * 113.61335 * 179.97438 * 5 2 1 23 23 H 1.09003 * 109.46722 * 59.99893 * 1 2 3 24 24 H 1.08997 * 109.46965 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47070 * 300.00079 * 1 2 3 26 26 H 1.08995 * 109.46864 * 179.97438 * 4 2 1 27 27 H 1.08997 * 109.47039 * 300.00556 * 4 2 1 28 28 H 1.09005 * 109.46557 * 60.00761 * 4 2 1 29 29 H 1.09003 * 113.61309 * 25.42452 * 7 5 2 30 30 H 1.09000 * 113.66774 * 254.47203 * 7 5 2 31 31 H 1.09002 * 109.47398 * 34.13594 * 10 8 7 32 32 H 1.09001 * 109.47194 * 154.13774 * 10 8 7 33 33 H 0.97000 * 120.00420 * 0.02562 * 11 10 8 34 34 H 1.07998 * 119.55040 * 179.97438 * 14 13 12 35 35 H 1.09001 * 109.46763 * 125.00191 * 16 15 14 36 36 H 0.96696 * 113.99765 * 60.00036 * 17 16 15 37 37 H 1.48499 * 110.00317 * 58.67918 * 18 16 15 38 38 H 1.48499 * 109.99794 * 179.97438 * 18 16 15 39 39 H 1.07999 * 120.75565 * 179.97438 * 19 15 14 40 40 H 1.09000 * 113.61215 * 105.38905 * 22 5 2 41 41 H 1.08993 * 113.69471 * 334.48967 * 22 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 1 1.8053 0.9513 0.0000 4 6 1.9587 -0.6924 1.1995 5 6 1.9587 -0.6925 -1.1994 6 1 1.4761 -1.6568 -1.3581 7 6 1.9897 0.1940 -2.4578 8 6 3.3294 -0.4787 -2.8009 9 1 3.2229 -1.3846 -3.3974 10 6 4.3725 0.4867 -3.3673 11 7 4.1853 0.6135 -4.8147 12 6 5.0219 1.4437 -5.5544 13 7 5.9852 2.1157 -4.9446 14 6 6.8007 2.9134 -5.6090 15 6 6.6773 3.0758 -6.9737 16 6 7.6151 3.9901 -7.7190 17 8 6.8788 5.0879 -8.2619 18 14 8.9160 4.6322 -6.5502 19 6 5.6795 2.3890 -7.6535 20 6 4.8420 1.5558 -6.9316 21 9 3.8616 0.8646 -7.5530 22 6 3.4925 -0.7474 -1.2959 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 3.0487 -0.6928 1.1992 27 1 1.5953 -0.1786 2.0894 28 1 1.5954 -1.7202 1.1994 29 1 2.0786 1.2583 -2.2400 30 1 1.1946 -0.0284 -3.1694 31 1 4.2556 1.4639 -2.8988 32 1 5.3719 0.1028 -3.1625 33 1 3.4777 0.1193 -5.2575 34 1 7.5751 3.4461 -5.0771 35 1 8.0940 3.4384 -8.5280 36 1 6.4254 5.6244 -7.5972 37 1 9.6678 3.4986 -5.9546 38 1 9.8475 5.5348 -7.2733 39 1 5.5621 2.4996 -8.7214 40 1 3.9092 -1.7291 -1.0706 41 1 3.9942 0.0585 -0.7604 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_11760414_17656566.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:18:10 Heat of formation + Delta-G solvation = 99.471759 kcal Electronic energy + Delta-G solvation = -22252.594813 eV Core-core repulsion = 18782.124978 eV Total energy + Delta-G solvation = -3470.469835 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 283.156 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -50.01382 -42.57234 -41.41823 -38.83893 -37.94316 -36.18699 -33.31330 -31.93164 -29.63608 -29.17928 -26.86826 -26.51432 -26.09263 -24.87874 -23.44519 -22.88217 -21.37474 -19.41449 -18.64648 -18.44530 -18.38102 -17.87025 -17.48675 -17.16576 -17.06146 -16.63919 -16.14915 -15.89846 -15.69550 -15.43500 -15.37007 -14.39536 -14.30789 -14.14554 -13.87205 -13.82297 -13.65924 -13.52754 -13.49574 -13.24969 -13.14117 -12.86999 -12.60665 -12.21392 -12.20130 -11.80038 -11.65600 -11.23910 -10.77436 -10.75942 -10.46098 -8.79478 -5.03903 -0.14330 0.04736 0.99402 1.27307 1.62180 1.93608 2.00474 2.49370 2.58455 2.88778 2.96111 3.00199 3.22796 3.41155 3.45236 3.52391 3.59366 3.62852 3.72468 3.82575 3.98275 4.09235 4.20359 4.27477 4.34621 4.38213 4.39046 4.43007 4.45900 4.55365 4.68050 4.72550 4.76878 4.79367 4.83198 4.85583 4.90875 4.96442 5.00710 5.22505 5.33627 5.94154 6.13515 6.76498 6.89321 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.026662 B = 0.003474 C = 0.003245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.923943 B = 8058.378385 C = 8625.467864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.365 5.365 3 H 0.436 0.564 4 C -0.049 4.049 5 C 0.021 3.979 6 H 0.168 0.832 7 C -0.141 4.141 8 C -0.127 4.127 9 H 0.104 0.896 10 C 0.140 3.860 11 N -0.714 5.714 12 C 0.384 3.616 13 N -0.519 5.519 14 C 0.151 3.849 15 C -0.207 4.207 16 C -0.063 4.063 17 O -0.557 6.557 18 Si 0.781 3.219 19 C -0.048 4.048 20 C -0.038 4.038 21 F -0.141 7.141 22 C -0.132 4.132 23 H 0.119 0.881 24 H 0.119 0.881 25 H 0.128 0.872 26 H 0.122 0.878 27 H 0.129 0.871 28 H 0.119 0.881 29 H 0.116 0.884 30 H 0.095 0.905 31 H 0.078 0.922 32 H 0.056 0.944 33 H 0.417 0.583 34 H 0.186 0.814 35 H 0.105 0.895 36 H 0.396 0.604 37 H -0.278 1.278 38 H -0.307 1.307 39 H 0.145 0.855 40 H 0.100 0.900 41 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.760 -7.470 25.614 31.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 N 0.058 4.942 3 H 0.274 0.726 4 C -0.191 4.191 5 C -0.081 4.081 6 H 0.185 0.815 7 C -0.179 4.179 8 C -0.147 4.147 9 H 0.122 0.878 10 C 0.017 3.983 11 N -0.348 5.348 12 C 0.144 3.856 13 N -0.237 5.237 14 C -0.006 4.006 15 C -0.212 4.212 16 C -0.173 4.173 17 O -0.365 6.365 18 Si 0.687 3.313 19 C -0.075 4.075 20 C -0.065 4.065 21 F -0.120 7.120 22 C -0.170 4.170 23 H 0.138 0.862 24 H 0.138 0.862 25 H 0.146 0.854 26 H 0.140 0.860 27 H 0.147 0.853 28 H 0.138 0.862 29 H 0.134 0.866 30 H 0.113 0.887 31 H 0.096 0.904 32 H 0.075 0.925 33 H 0.254 0.746 34 H 0.202 0.798 35 H 0.123 0.877 36 H 0.246 0.754 37 H -0.205 1.205 38 H -0.235 1.235 39 H 0.163 0.837 40 H 0.119 0.881 41 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -15.724 -8.079 26.367 31.745 hybrid contribution -0.322 -0.431 -2.389 2.449 sum -16.046 -8.511 23.978 30.080 Atomic orbital electron populations 1.24092 0.75763 1.09493 1.09516 1.45015 1.16030 1.18984 1.14214 0.72640 1.24110 1.05751 1.02550 0.86652 1.24932 0.98208 1.00868 0.84118 0.81474 1.23665 0.98098 1.00484 0.95649 1.22599 0.95096 0.99367 0.97615 0.87791 1.21443 0.99120 0.99827 0.77956 1.44595 1.34359 1.47330 1.08533 1.18532 0.90212 0.90709 0.86117 1.67350 1.06159 1.11544 1.38618 1.22656 0.95153 0.92440 0.90335 1.20948 1.00820 1.04005 0.95409 1.25012 0.99821 0.88721 1.03793 1.86507 1.69563 1.41684 1.38790 0.94021 0.76652 0.79657 0.81019 1.21454 0.92338 0.92124 1.01553 1.18166 0.94566 1.02818 0.90900 1.91471 1.60005 1.77816 1.82750 1.23462 0.92581 1.06366 0.94589 0.86214 0.86215 0.85365 0.85983 0.85306 0.86249 0.86600 0.88665 0.90367 0.92534 0.74562 0.79805 0.87714 0.75365 1.20451 1.23526 0.83741 0.88126 0.86069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 2.92 9.15 127.69 1.17 4.09 16 2 N -0.37 23.68 0.62 -919.81 -0.57 23.11 16 3 H 0.44 -29.76 8.21 -89.69 -0.74 -30.50 16 4 C -0.05 3.06 8.99 127.69 1.15 4.21 16 5 C 0.02 -1.26 2.92 45.50 0.13 -1.13 16 6 H 0.17 -10.06 8.11 -2.39 -0.02 -10.08 16 7 C -0.14 7.42 7.14 31.18 0.22 7.64 16 8 C -0.13 5.83 3.75 -10.28 -0.04 5.79 16 9 H 0.10 -4.48 8.14 -2.39 -0.02 -4.50 16 10 C 0.14 -5.00 5.52 86.38 0.48 -4.52 16 11 N -0.71 19.94 5.71 -344.81 -1.97 17.97 16 12 C 0.38 -7.58 7.49 133.08 1.00 -6.58 16 13 N -0.52 10.08 9.57 -193.03 -1.85 8.23 16 14 C 0.15 -2.99 9.84 84.61 0.83 -2.16 16 15 C -0.21 3.60 5.36 -19.76 -0.11 3.50 16 16 C -0.06 1.05 2.82 71.24 0.20 1.25 16 17 O -0.56 8.43 12.84 -148.98 -1.91 6.52 16 18 Si 0.78 -14.40 29.83 68.60 2.05 -12.36 16 19 C -0.05 0.73 9.82 22.48 0.22 0.95 16 20 C -0.04 0.61 7.35 22.58 0.17 0.77 16 21 F -0.14 2.01 16.65 44.97 0.75 2.76 16 22 C -0.13 7.02 6.14 31.11 0.19 7.21 16 23 H 0.12 -7.35 8.01 -2.39 -0.02 -7.36 16 24 H 0.12 -7.36 8.13 -2.39 -0.02 -7.38 16 25 H 0.13 -8.03 8.14 -2.39 -0.02 -8.05 16 26 H 0.12 -7.56 7.14 -2.39 -0.02 -7.57 16 27 H 0.13 -8.09 8.14 -2.39 -0.02 -8.11 16 28 H 0.12 -7.34 8.14 -2.38 -0.02 -7.36 16 29 H 0.12 -6.26 7.73 -2.39 -0.02 -6.27 16 30 H 0.09 -4.74 8.14 -2.39 -0.02 -4.76 16 31 H 0.08 -2.89 7.88 -2.39 -0.02 -2.91 16 32 H 0.06 -1.77 8.14 -2.39 -0.02 -1.79 16 33 H 0.42 -12.38 7.94 -92.71 -0.74 -13.12 16 34 H 0.19 -4.59 4.90 -2.91 -0.01 -4.61 16 35 H 0.11 -1.54 7.96 -2.39 -0.02 -1.56 16 36 H 0.40 -9.45 8.70 -74.06 -0.64 -10.09 16 37 H -0.28 4.02 7.11 99.48 0.71 4.73 16 38 H -0.31 2.64 7.11 99.48 0.71 3.35 16 39 H 0.14 -2.12 8.06 -2.91 -0.02 -2.14 16 40 H 0.10 -5.13 8.14 -2.39 -0.02 -5.15 16 41 H 0.12 -6.72 8.00 -2.39 -0.02 -6.74 16 Total: 1.00 -75.80 333.47 1.08 -74.72 By element: Atomic # 1 Polarization: -140.96 SS G_CDS: -1.03 Total: -141.99 kcal Atomic # 6 Polarization: 15.41 SS G_CDS: 5.61 Total: 21.03 kcal Atomic # 7 Polarization: 53.71 SS G_CDS: -4.39 Total: 49.32 kcal Atomic # 8 Polarization: 8.43 SS G_CDS: -1.91 Total: 6.52 kcal Atomic # 9 Polarization: 2.01 SS G_CDS: 0.75 Total: 2.76 kcal Atomic # 14 Polarization: -14.40 SS G_CDS: 2.05 Total: -12.36 kcal Total: -75.80 1.08 -74.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_11760414_17656566.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.193 kcal (2) G-P(sol) polarization free energy of solvation -75.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.721 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds