Wall clock time and date at job start Mon Mar 8 2021 03:27:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42906 * 1 3 3 Si 1.86301 * 109.47006 * 2 1 4 4 C 1.50694 * 109.47036 * 239.99861 * 2 1 3 5 5 C 1.38607 * 120.71990 * 119.72180 * 4 2 1 6 6 N 1.32277 * 119.19915 * 179.71364 * 5 4 2 7 7 C 1.32492 * 120.73958 * 0.57025 * 6 5 4 8 8 N 1.38409 * 119.21993 * 179.72409 * 7 6 5 9 9 C 1.46494 * 119.99707 * 359.97438 * 8 7 6 10 10 H 1.09002 * 112.85312 * 23.80203 * 9 8 7 11 11 C 1.53790 * 113.61323 * 154.99869 * 9 8 7 12 12 C 1.53778 * 87.07905 * 139.97953 * 11 9 8 13 13 H 1.09002 * 113.60998 * 220.01654 * 12 11 9 14 14 O 1.42898 * 113.61695 * 89.20035 * 12 11 9 15 15 C 1.35901 * 117.00197 * 156.67975 * 14 12 11 16 16 C 1.38731 * 120.05621 * 5.43530 * 15 14 12 17 17 C 1.38146 * 119.94527 * 179.74102 * 16 15 14 18 18 C 1.38262 * 120.05299 * 0.51038 * 17 16 15 19 19 C 1.38267 * 120.11545 * 359.76673 * 18 17 16 20 20 C 1.38149 * 120.05109 * 359.97438 * 19 18 17 21 21 C 1.53780 * 113.61366 * 252.49348 * 9 8 7 22 22 N 1.32502 * 121.56474 * 359.70355 * 7 6 5 23 23 C 1.32271 * 120.73764 * 0.02562 * 22 7 6 24 24 H 0.96696 * 114.00059 * 60.00255 * 1 2 3 25 25 H 1.08995 * 109.46948 * 119.99902 * 2 1 3 26 26 H 1.48498 * 110.00022 * 59.99738 * 3 2 1 27 27 H 1.48500 * 110.00028 * 181.31918 * 3 2 1 28 28 H 1.08003 * 120.40271 * 359.97438 * 5 4 2 29 29 H 0.97001 * 119.99507 * 179.97438 * 8 7 6 30 30 H 1.09000 * 113.61027 * 254.52666 * 11 9 8 31 31 H 1.08993 * 113.61133 * 25.43158 * 11 9 8 32 32 H 1.08002 * 120.02420 * 359.97438 * 16 15 14 33 33 H 1.07998 * 119.97323 * 180.23253 * 17 16 15 34 34 H 1.08003 * 119.94729 * 179.74373 * 18 17 16 35 35 H 1.07997 * 119.97617 * 179.97438 * 19 18 17 36 36 H 1.08004 * 120.02612 * 179.97438 * 20 19 18 37 37 H 1.09000 * 113.61658 * 334.56840 * 21 9 8 38 38 H 1.09003 * 113.61748 * 105.47033 * 21 9 8 39 39 H 1.08004 * 120.40201 * 180.02562 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7104 -1.2304 5 6 2.7243 -0.0496 -2.1554 6 7 3.1534 -0.7039 -3.2220 7 6 2.8239 -1.9724 -3.4162 8 7 3.2857 -2.6250 -4.5461 9 6 4.1278 -1.9130 -5.5104 10 1 4.6531 -1.0659 -5.0692 11 6 5.0364 -2.8389 -6.3364 12 6 4.7157 -1.9447 -7.5456 13 1 4.5637 -2.5000 -8.4712 14 8 5.6157 -0.8455 -7.6995 15 6 5.7287 -0.3100 -8.9434 16 6 4.9077 -0.7556 -9.9690 17 6 5.0208 -0.2059 -11.2313 18 6 5.9586 0.7803 -11.4755 19 6 6.7821 1.2222 -10.4565 20 6 6.6692 0.6794 -9.1912 21 6 3.4074 -1.5759 -6.8265 22 7 2.0631 -2.6312 -2.5543 23 6 1.6054 -2.0370 -1.4649 24 1 -0.3933 0.4416 -0.7650 25 1 1.7923 -0.5138 0.8900 26 1 1.5615 2.4679 1.2084 27 1 3.5346 1.7703 -0.0321 28 1 2.9922 0.9858 -2.0051 29 1 3.0516 -3.5538 -4.6993 30 1 6.0832 -2.8062 -6.0345 31 1 4.6536 -3.8551 -6.4312 32 1 4.1780 -1.5291 -9.7797 33 1 4.3793 -0.5499 -12.0291 34 1 6.0485 1.2059 -12.4641 35 1 7.5141 1.9923 -10.6499 36 1 7.3129 1.0246 -8.3956 37 1 2.5793 -2.2468 -7.0553 38 1 3.1391 -0.5236 -6.9204 39 1 0.9860 -2.5793 -0.7658 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_11987232_12175864.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 03:27:19 Heat of formation + Delta-G solvation = 62.970073 kcal Electronic energy + Delta-G solvation = -23011.558392 eV Core-core repulsion = 19502.103924 eV Total energy + Delta-G solvation = -3509.454468 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 300.126 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.18078 -41.51362 -39.75353 -38.13455 -37.49161 -35.21372 -34.73638 -32.15121 -31.86045 -30.62190 -27.16431 -26.84615 -26.03433 -25.32092 -23.58030 -23.33769 -22.90527 -20.82575 -19.47195 -19.33769 -18.60665 -18.00289 -17.10404 -16.89880 -16.69864 -16.55446 -16.15219 -15.99546 -15.84171 -15.54234 -15.28329 -15.22667 -14.60971 -14.36335 -14.08807 -13.92626 -13.75473 -13.50581 -13.33118 -12.97169 -12.66430 -12.47339 -12.24592 -12.10383 -11.93928 -11.79769 -11.58828 -11.33376 -11.17205 -10.56264 -10.06041 -9.96136 -9.19475 -9.11073 -5.00305 0.01595 0.10908 0.38292 0.47429 1.31132 1.62496 1.80412 1.97144 2.08089 2.74927 2.82777 3.12928 3.34828 3.42363 3.52298 3.62883 3.68550 3.73733 3.76606 3.87633 3.92857 4.03533 4.17507 4.23833 4.32786 4.49034 4.53309 4.55938 4.61403 4.67225 4.70000 4.73921 4.86795 4.93111 4.98930 5.08098 5.29739 5.35449 5.48270 5.60920 5.73455 5.86477 6.01156 6.38165 6.45642 6.77392 7.24412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.553 6.553 2 C -0.045 4.045 3 Si 0.765 3.235 4 C -0.286 4.286 5 C 0.192 3.808 6 N -0.580 5.580 7 C 0.551 3.449 8 N -0.679 5.679 9 C 0.144 3.856 10 H 0.104 0.896 11 C -0.131 4.131 12 C 0.055 3.945 13 H 0.110 0.890 14 O -0.309 6.309 15 C 0.112 3.888 16 C -0.216 4.216 17 C -0.088 4.088 18 C -0.168 4.168 19 C -0.087 4.087 20 C -0.172 4.172 21 C -0.162 4.162 22 N -0.588 5.588 23 C 0.213 3.787 24 H 0.395 0.605 25 H 0.115 0.885 26 H -0.294 1.294 27 H -0.284 1.284 28 H 0.185 0.815 29 H 0.421 0.579 30 H 0.083 0.917 31 H 0.129 0.871 32 H 0.144 0.856 33 H 0.144 0.856 34 H 0.141 0.859 35 H 0.147 0.853 36 H 0.131 0.869 37 H 0.113 0.887 38 H 0.067 0.933 39 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.211 0.227 -3.710 3.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.361 6.361 2 C -0.157 4.157 3 Si 0.671 3.329 4 C -0.294 4.294 5 C 0.025 3.975 6 N -0.303 5.303 7 C 0.195 3.805 8 N -0.316 5.316 9 C 0.038 3.962 10 H 0.122 0.878 11 C -0.169 4.169 12 C -0.002 4.002 13 H 0.128 0.872 14 O -0.223 6.223 15 C 0.068 3.932 16 C -0.235 4.235 17 C -0.106 4.106 18 C -0.186 4.186 19 C -0.105 4.105 20 C -0.191 4.191 21 C -0.201 4.201 22 N -0.310 5.310 23 C 0.045 3.955 24 H 0.245 0.755 25 H 0.132 0.868 26 H -0.222 1.222 27 H -0.211 1.211 28 H 0.202 0.798 29 H 0.260 0.740 30 H 0.102 0.898 31 H 0.147 0.853 32 H 0.162 0.838 33 H 0.162 0.838 34 H 0.159 0.841 35 H 0.164 0.836 36 H 0.149 0.851 37 H 0.131 0.869 38 H 0.086 0.914 39 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -0.086 0.156 -3.535 3.539 hybrid contribution -0.334 -0.543 0.971 1.162 sum -0.420 -0.387 -2.564 2.627 Atomic orbital electron populations 1.86475 1.17102 1.82048 1.50466 1.24771 0.85178 1.09965 0.95798 0.93936 0.77951 0.75461 0.85568 1.21774 1.07529 0.98112 1.02032 1.23173 0.88276 0.99673 0.86373 1.67950 1.28733 1.08805 1.24787 1.19700 0.87226 0.86021 0.87592 1.44239 1.53410 1.14652 1.19250 1.22506 0.91238 0.95964 0.86488 0.87796 1.23634 1.01396 0.99199 0.92708 1.23254 0.89895 0.87300 0.99720 0.87228 1.86060 1.61650 1.47425 1.27194 1.19235 0.95454 0.94420 0.84131 1.21506 1.03114 1.04867 0.93973 1.21315 0.97538 0.95306 0.96481 1.21434 0.97456 0.99265 1.00413 1.21295 0.98721 0.98844 0.91645 1.20704 1.00379 0.99148 0.98835 1.24014 0.97397 1.03163 0.95528 1.68023 1.16772 1.39802 1.06380 1.23154 0.90327 0.91214 0.90775 0.75539 0.86796 1.22153 1.21121 0.79836 0.73998 0.89838 0.85337 0.83840 0.83842 0.84117 0.83570 0.85066 0.86923 0.91394 0.79921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 1.12 12.79 -148.98 -1.90 -0.79 16 2 C -0.05 0.11 2.85 71.23 0.20 0.31 16 3 Si 0.76 -2.69 29.87 68.60 2.05 -0.64 16 4 C -0.29 -0.03 5.40 -19.69 -0.11 -0.14 16 5 C 0.19 0.28 9.92 84.71 0.84 1.12 16 6 N -0.58 -3.47 9.13 -197.98 -1.81 -5.28 16 7 C 0.55 3.27 8.43 261.48 2.20 5.48 16 8 N -0.68 -0.80 5.50 -327.92 -1.80 -2.60 16 9 C 0.14 0.02 4.19 45.52 0.19 0.21 16 10 H 0.10 0.51 7.37 -2.39 -0.02 0.49 16 11 C -0.13 0.49 7.66 31.12 0.24 0.73 16 12 C 0.06 -0.09 3.75 31.12 0.12 0.02 16 13 H 0.11 -0.53 5.95 -2.39 -0.01 -0.54 16 14 O -0.31 -1.37 10.07 -92.43 -0.93 -2.30 16 15 C 0.11 0.53 6.68 22.51 0.15 0.68 16 16 C -0.22 -0.38 9.02 22.37 0.20 -0.18 16 17 C -0.09 -0.05 10.04 22.25 0.22 0.17 16 18 C -0.17 -0.12 10.04 22.28 0.22 0.11 16 19 C -0.09 -0.14 10.04 22.26 0.22 0.09 16 20 C -0.17 -0.73 9.99 22.37 0.22 -0.51 16 21 C -0.16 0.27 7.71 31.12 0.24 0.51 16 22 N -0.59 -3.56 10.46 -197.98 -2.07 -5.63 16 23 C 0.21 0.52 10.92 84.71 0.93 1.45 16 24 H 0.39 -3.72 8.70 -74.06 -0.64 -4.36 16 25 H 0.11 -0.24 7.96 -2.39 -0.02 -0.25 16 26 H -0.29 -1.15 7.11 99.48 0.71 -0.45 16 27 H -0.28 -0.41 7.11 99.48 0.71 0.30 16 28 H 0.19 -0.69 5.04 -2.91 -0.01 -0.71 16 29 H 0.42 -0.92 8.84 -92.71 -0.82 -1.74 16 30 H 0.08 -0.16 8.14 -2.39 -0.02 -0.18 16 31 H 0.13 -1.09 8.12 -2.39 -0.02 -1.11 16 32 H 0.14 -0.34 5.91 -2.91 -0.02 -0.36 16 33 H 0.14 -0.57 8.06 -2.91 -0.02 -0.59 16 34 H 0.14 -0.47 8.06 -2.91 -0.02 -0.50 16 35 H 0.15 -0.41 8.06 -2.91 -0.02 -0.44 16 36 H 0.13 0.37 8.06 -2.91 -0.02 0.35 16 37 H 0.11 -0.53 8.14 -2.39 -0.02 -0.55 16 38 H 0.07 0.13 8.14 -2.39 -0.02 0.11 16 39 H 0.18 -0.23 8.06 -2.91 -0.02 -0.26 16 Total: 0.00 -17.27 331.27 -0.70 -17.97 By element: Atomic # 1 Polarization: -10.45 SS G_CDS: -0.33 Total: -10.78 kcal Atomic # 6 Polarization: 3.94 SS G_CDS: 6.10 Total: 10.04 kcal Atomic # 7 Polarization: -7.83 SS G_CDS: -5.68 Total: -13.51 kcal Atomic # 8 Polarization: -0.25 SS G_CDS: -2.84 Total: -3.09 kcal Atomic # 14 Polarization: -2.69 SS G_CDS: 2.05 Total: -0.64 kcal Total: -17.27 -0.70 -17.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_11987232_12175864.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.941 kcal (2) G-P(sol) polarization free energy of solvation -17.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.971 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds