Wall clock time and date at job start Mon Mar 8 2021 03:27:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86304 * 109.47014 * 2 1 4 4 C 1.50701 * 109.46874 * 240.00083 * 2 1 3 5 5 C 1.38024 * 120.33022 * 119.72412 * 4 2 1 6 6 N 1.31979 * 120.84960 * 179.73083 * 5 4 2 7 7 C 1.32394 * 121.62517 * 0.57632 * 6 5 4 8 8 N 1.38995 * 119.70630 * 179.71005 * 7 6 5 9 9 C 1.46504 * 119.99948 * 179.97438 * 8 7 6 10 10 H 1.08997 * 112.85018 * 336.19972 * 9 8 7 11 11 C 1.53789 * 113.61345 * 107.50180 * 9 8 7 12 12 C 1.53778 * 87.08031 * 89.11739 * 11 9 8 13 13 H 1.09001 * 113.61337 * 270.88577 * 12 11 9 14 14 O 1.42896 * 113.69024 * 139.99418 * 12 11 9 15 15 C 1.35902 * 117.00287 * 104.59323 * 14 12 11 16 16 C 1.38732 * 120.05689 * 173.77600 * 15 14 12 17 17 C 1.38149 * 119.94076 * 179.74228 * 16 15 14 18 18 C 1.38267 * 120.05524 * 0.50590 * 17 16 15 19 19 C 1.38267 * 120.11307 * 359.77205 * 18 17 16 20 20 C 1.38140 * 120.05378 * 359.97041 * 19 18 17 21 21 C 1.53779 * 113.61726 * 204.99734 * 9 8 7 22 22 C 1.39146 * 120.58601 * 359.68673 * 7 6 5 23 23 C 1.38298 * 119.09779 * 0.02562 * 22 7 6 24 24 H 0.96698 * 113.99757 * 299.99544 * 1 2 3 25 25 H 1.08999 * 109.47352 * 120.00200 * 2 1 3 26 26 H 1.48495 * 110.00086 * 300.00191 * 3 2 1 27 27 H 1.48498 * 109.99761 * 61.32051 * 3 2 1 28 28 H 1.07997 * 119.57618 * 0.02562 * 5 4 2 29 29 H 0.96998 * 120.00411 * 359.97438 * 8 7 6 30 30 H 1.08992 * 113.61365 * 203.66484 * 11 9 8 31 31 H 1.09001 * 113.61115 * 334.56991 * 11 9 8 32 32 H 1.07996 * 120.02849 * 359.97438 * 16 15 14 33 33 H 1.07994 * 119.96985 * 180.23340 * 17 16 15 34 34 H 1.07999 * 119.94159 * 179.74834 * 18 17 16 35 35 H 1.08000 * 119.97072 * 179.97438 * 19 18 17 36 36 H 1.07998 * 120.02558 * 180.02562 * 20 19 18 37 37 H 1.09007 * 113.61394 * 25.43333 * 21 9 8 38 38 H 1.08997 * 113.61814 * 156.25156 * 21 9 8 39 39 H 1.08000 * 120.44904 * 180.02562 * 22 7 6 40 40 H 1.07993 * 120.74323 * 179.97438 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 2.7205 -0.0446 -2.1464 6 7 3.1703 -0.6582 -3.2248 7 6 2.8763 -1.9243 -3.4766 8 7 3.3667 -2.5295 -4.6278 9 6 3.0458 -3.9303 -4.9125 10 1 2.7936 -4.4973 -4.0164 11 6 2.0395 -4.1106 -6.0614 12 6 3.2487 -4.1390 -7.0111 13 1 3.5429 -3.1539 -7.3730 14 8 3.1329 -5.1034 -8.0592 15 6 2.8397 -4.6337 -9.3003 16 6 2.8396 -5.4956 -10.3874 17 6 2.5361 -5.0166 -11.6471 18 6 2.2427 -3.6774 -11.8266 19 6 2.2478 -2.8152 -10.7457 20 6 2.5455 -3.2903 -9.4832 21 6 4.0789 -4.6283 -5.8127 22 6 2.0812 -2.6546 -2.5988 23 6 1.6000 -2.0399 -1.4572 24 1 -0.3933 0.4416 0.7651 25 1 1.7924 -0.5138 0.8899 26 1 1.5615 2.4679 -1.2084 27 1 1.5879 2.4585 1.2242 28 1 2.9772 0.9905 -1.9760 29 1 3.9214 -2.0244 -5.2427 30 1 1.4943 -5.0535 -6.0203 31 1 1.3878 -3.2496 -6.2100 32 1 3.0730 -6.5409 -10.2483 33 1 2.5322 -5.6879 -12.4930 34 1 2.0097 -3.3041 -12.8129 35 1 2.0188 -1.7695 -10.8886 36 1 2.5490 -2.6165 -8.6392 37 1 5.0736 -4.1853 -5.7606 38 1 4.0922 -5.7126 -5.7026 39 1 1.8431 -3.6874 -2.8062 40 1 0.9803 -2.5815 -0.7580 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_11987232_13915762.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 03:27:22 Heat of formation + Delta-G solvation = 46.614760 kcal Electronic energy + Delta-G solvation = -22855.332662 eV Core-core repulsion = 19410.594885 eV Total energy + Delta-G solvation = -3444.737776 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 299.131 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.79378 -41.19211 -39.79904 -38.10177 -37.58789 -35.01627 -33.41838 -31.98753 -31.28780 -30.63770 -26.92050 -26.82154 -25.71335 -24.76184 -23.59819 -23.06209 -22.43234 -20.45608 -19.68447 -18.76641 -18.50118 -17.90962 -17.29798 -16.82130 -16.67763 -16.53111 -16.11005 -15.63186 -15.62599 -15.40449 -15.21849 -14.89553 -14.42187 -14.26215 -14.05891 -13.94624 -13.77474 -13.63837 -13.51050 -13.12789 -12.74273 -12.49145 -12.38491 -12.04816 -11.95865 -11.58290 -11.35166 -11.12893 -10.78959 -10.61133 -10.32483 -10.00698 -9.20237 -8.74669 -4.92420 0.19405 0.33709 0.38445 0.43801 1.32175 1.59437 1.95516 1.97117 2.20462 2.75073 2.79008 3.30547 3.37353 3.43873 3.57027 3.68909 3.70723 3.83485 3.88004 3.95136 3.99331 4.08866 4.17246 4.26803 4.34903 4.44246 4.47413 4.53603 4.62510 4.67927 4.72478 4.74959 4.82611 4.89249 4.94942 5.01907 5.04035 5.29627 5.32702 5.43913 5.50722 5.56688 5.81802 5.98751 6.42934 6.47304 6.62333 7.09828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.560 6.560 2 C -0.065 4.065 3 Si 0.751 3.249 4 C -0.196 4.196 5 C 0.143 3.857 6 N -0.562 5.562 7 C 0.396 3.604 8 N -0.704 5.704 9 C 0.139 3.861 10 H 0.124 0.876 11 C -0.168 4.168 12 C 0.048 3.952 13 H 0.101 0.899 14 O -0.313 6.313 15 C 0.112 3.888 16 C -0.171 4.171 17 C -0.086 4.086 18 C -0.168 4.168 19 C -0.090 4.090 20 C -0.219 4.219 21 C -0.126 4.126 22 C -0.239 4.239 23 C -0.013 4.013 24 H 0.395 0.605 25 H 0.098 0.902 26 H -0.302 1.302 27 H -0.283 1.283 28 H 0.166 0.834 29 H 0.407 0.593 30 H 0.107 0.893 31 H 0.069 0.931 32 H 0.136 0.864 33 H 0.149 0.851 34 H 0.141 0.859 35 H 0.140 0.860 36 H 0.134 0.866 37 H 0.091 0.909 38 H 0.118 0.882 39 H 0.155 0.845 40 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.755 -1.668 2.135 3.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.370 6.370 2 C -0.175 4.175 3 Si 0.657 3.343 4 C -0.201 4.201 5 C -0.013 4.013 6 N -0.280 5.280 7 C 0.160 3.840 8 N -0.335 5.335 9 C 0.032 3.968 10 H 0.142 0.858 11 C -0.207 4.207 12 C -0.009 4.009 13 H 0.118 0.882 14 O -0.227 6.227 15 C 0.067 3.933 16 C -0.189 4.189 17 C -0.104 4.104 18 C -0.186 4.186 19 C -0.108 4.108 20 C -0.238 4.238 21 C -0.164 4.164 22 C -0.263 4.263 23 C -0.039 4.039 24 H 0.245 0.755 25 H 0.116 0.884 26 H -0.230 1.230 27 H -0.209 1.209 28 H 0.182 0.818 29 H 0.243 0.757 30 H 0.125 0.875 31 H 0.088 0.912 32 H 0.153 0.847 33 H 0.167 0.833 34 H 0.159 0.841 35 H 0.157 0.843 36 H 0.152 0.848 37 H 0.110 0.890 38 H 0.136 0.864 39 H 0.172 0.828 40 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 2.153 -1.093 1.065 2.639 hybrid contribution -1.599 0.080 0.662 1.733 sum 0.554 -1.013 1.727 2.078 Atomic orbital electron populations 1.86542 1.18730 1.80570 1.51110 1.24664 0.83776 1.11019 0.98061 0.94358 0.90568 0.72840 0.76558 1.20156 1.04630 0.96070 0.99286 1.22386 0.92239 0.99085 0.87598 1.67128 1.28327 1.09897 1.22632 1.18566 0.89686 0.88441 0.87261 1.44200 1.55777 1.11434 1.22136 1.21636 0.95809 0.81228 0.98103 0.85846 1.24098 0.97296 1.03802 0.95519 1.24384 0.98603 0.92829 0.85035 0.88170 1.86131 1.84826 1.36598 1.15127 1.19257 0.95869 0.92932 0.85232 1.20738 1.06500 1.00459 0.91216 1.21323 0.96199 0.96210 0.96633 1.21422 1.03292 0.93893 0.99979 1.21288 0.96766 1.00807 0.91983 1.21440 1.08040 0.94800 0.99518 1.23571 0.98629 1.03259 0.90971 1.21720 1.04863 1.02701 0.97040 1.21428 0.93619 0.93419 0.95448 0.75498 0.88443 1.22952 1.20940 0.81793 0.75682 0.87461 0.91229 0.84652 0.83346 0.84098 0.84256 0.84784 0.89049 0.86369 0.82776 0.83432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -1.00 12.75 -148.98 -1.90 -2.90 16 2 C -0.07 0.05 2.83 71.24 0.20 0.25 16 3 Si 0.75 -1.12 29.82 68.60 2.05 0.93 16 4 C -0.20 -0.59 5.43 -19.76 -0.11 -0.69 16 5 C 0.14 0.64 9.84 84.62 0.83 1.48 16 6 N -0.56 -3.80 10.39 -193.26 -2.01 -5.81 16 7 C 0.40 1.43 7.65 133.07 1.02 2.45 16 8 N -0.70 0.67 5.44 -322.03 -1.75 -1.08 16 9 C 0.14 -0.63 4.11 45.52 0.19 -0.45 16 10 H 0.12 -0.87 6.10 -2.39 -0.01 -0.88 16 11 C -0.17 0.42 7.71 31.12 0.24 0.66 16 12 C 0.05 -0.06 3.51 31.12 0.11 0.05 16 13 H 0.10 -0.18 6.04 -2.39 -0.01 -0.19 16 14 O -0.31 -1.34 10.15 -92.45 -0.94 -2.28 16 15 C 0.11 0.62 6.68 22.51 0.15 0.77 16 16 C -0.17 -0.76 9.99 22.37 0.22 -0.54 16 17 C -0.09 -0.18 10.04 22.26 0.22 0.04 16 18 C -0.17 -0.32 10.04 22.28 0.22 -0.09 16 19 C -0.09 -0.23 10.04 22.25 0.22 -0.01 16 20 C -0.22 -0.84 9.01 22.37 0.20 -0.64 16 21 C -0.13 0.61 7.66 31.12 0.24 0.85 16 22 C -0.24 -0.30 9.29 22.50 0.21 -0.09 16 23 C -0.01 -0.03 9.77 22.44 0.22 0.19 16 24 H 0.39 -2.45 8.74 -74.06 -0.65 -3.10 16 25 H 0.10 -0.51 7.96 -2.39 -0.02 -0.53 16 26 H -0.30 -1.96 7.11 99.48 0.71 -1.26 16 27 H -0.28 -0.62 7.11 99.48 0.71 0.08 16 28 H 0.17 0.13 4.88 -2.91 -0.01 0.11 16 29 H 0.41 -0.62 8.82 -92.71 -0.82 -1.44 16 30 H 0.11 -0.31 8.14 -2.39 -0.02 -0.33 16 31 H 0.07 -0.01 8.14 -2.39 -0.02 -0.03 16 32 H 0.14 0.31 8.06 -2.91 -0.02 0.29 16 33 H 0.15 -0.40 8.06 -2.91 -0.02 -0.42 16 34 H 0.14 -0.31 8.06 -2.91 -0.02 -0.34 16 35 H 0.14 -0.19 8.06 -2.91 -0.02 -0.21 16 36 H 0.13 0.15 5.95 -2.91 -0.02 0.14 16 37 H 0.09 -0.51 8.14 -2.38 -0.02 -0.52 16 38 H 0.12 -0.70 8.14 -2.39 -0.02 -0.72 16 39 H 0.15 -0.55 6.03 -2.91 -0.02 -0.57 16 40 H 0.15 -0.18 8.06 -2.91 -0.02 -0.20 16 Total: 0.00 -16.53 333.75 -0.50 -17.03 By element: Atomic # 1 Polarization: -9.78 SS G_CDS: -0.34 Total: -10.13 kcal Atomic # 6 Polarization: -0.15 SS G_CDS: 4.39 Total: 4.25 kcal Atomic # 7 Polarization: -3.13 SS G_CDS: -3.76 Total: -6.89 kcal Atomic # 8 Polarization: -2.35 SS G_CDS: -2.84 Total: -5.18 kcal Atomic # 14 Polarization: -1.12 SS G_CDS: 2.05 Total: 0.93 kcal Total: -16.53 -0.50 -17.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_11987232_13915762.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.642 kcal (2) G-P(sol) polarization free energy of solvation -16.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.028 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds