Wall clock time and date at job start Mon Mar 8 2021 03:27:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86296 * 109.47109 * 2 1 4 4 C 1.50698 * 109.47354 * 239.99639 * 2 1 3 5 5 C 1.33323 * 125.95620 * 300.00463 * 4 2 1 6 6 N 1.32116 * 114.57955 * 179.97438 * 5 4 2 7 7 C 1.29686 * 116.87077 * 359.97438 * 6 5 4 8 8 N 1.38613 * 124.94983 * 179.97438 * 7 6 5 9 9 C 1.46497 * 120.00242 * 0.03275 * 8 7 6 10 10 H 1.09002 * 112.84851 * 23.79528 * 9 8 7 11 11 C 1.53781 * 113.61448 * 154.99603 * 9 8 7 12 12 C 1.53779 * 87.07948 * 89.11603 * 11 9 8 13 13 H 1.09006 * 113.61286 * 270.80004 * 12 11 9 14 14 O 1.42901 * 113.61603 * 139.98542 * 12 11 9 15 15 C 1.35901 * 117.00403 * 158.38308 * 14 12 11 16 16 C 1.38729 * 120.05535 * 186.26928 * 15 14 12 17 17 C 1.38145 * 119.94053 * 180.25168 * 16 15 14 18 18 C 1.38263 * 120.05681 * 359.44657 * 17 16 15 19 19 C 1.38265 * 120.11390 * 0.29818 * 18 17 16 20 20 C 1.38144 * 120.05096 * 359.97438 * 19 18 17 21 21 C 1.53773 * 87.17654 * 25.38681 * 12 11 9 22 22 S 1.70965 * 110.09866 * 0.24568 * 7 6 5 23 23 H 0.96698 * 113.99853 * 60.00216 * 1 2 3 24 24 H 1.09000 * 109.47037 * 120.00070 * 2 1 3 25 25 H 1.48507 * 109.99774 * 59.99767 * 3 2 1 26 26 H 1.48500 * 110.00307 * 181.31250 * 3 2 1 27 27 H 1.08003 * 122.70826 * 359.97372 * 5 4 2 28 28 H 0.97007 * 119.99278 * 180.02562 * 8 7 6 29 29 H 1.08997 * 113.61184 * 334.56579 * 11 9 8 30 30 H 1.08996 * 113.61230 * 203.65919 * 11 9 8 31 31 H 1.08001 * 120.03069 * 359.97438 * 16 15 14 32 32 H 1.08000 * 119.97024 * 179.72876 * 17 16 15 33 33 H 1.08002 * 119.94330 * 180.27869 * 18 17 16 34 34 H 1.07997 * 119.97745 * 179.97438 * 19 18 17 35 35 H 1.08004 * 120.02859 * 179.97438 * 20 19 18 36 36 H 1.09008 * 113.60931 * 89.15974 * 21 12 11 37 37 H 1.08998 * 113.61736 * 220.06214 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7105 -1.2304 5 6 1.6836 -1.9788 -1.5580 6 7 2.2378 -2.3721 -2.6910 7 6 2.9417 -1.4938 -3.3351 8 7 3.5949 -1.7252 -4.5355 9 6 3.5173 -3.0436 -5.1695 10 1 2.6356 -3.6080 -4.8657 11 6 3.7323 -3.0088 -6.6918 12 6 5.2337 -3.1763 -6.4044 13 1 5.7610 -2.2315 -6.2718 14 8 5.8956 -4.0583 -7.3133 15 6 7.2428 -3.9248 -7.4320 16 6 7.9319 -4.6562 -8.3883 17 6 9.3021 -4.5226 -8.5034 18 6 9.9850 -3.6522 -7.6741 19 6 9.2998 -2.9181 -6.7237 20 6 7.9304 -3.0524 -6.6008 21 6 4.8280 -3.8463 -5.0810 22 16 2.9527 -0.0111 -2.4840 23 1 -0.3933 0.4417 -0.7651 24 1 1.7923 -0.5138 0.8900 25 1 1.5614 2.4679 1.2085 26 1 3.5346 1.7703 -0.0320 27 1 1.0786 -2.6320 -0.9466 28 1 4.1034 -1.0140 -4.9558 29 1 3.4790 -2.0512 -7.1466 30 1 3.2905 -3.8570 -7.2146 31 1 7.3983 -5.3329 -9.0393 32 1 9.8396 -5.0950 -9.2448 33 1 11.0556 -3.5458 -7.7687 34 1 9.8355 -2.2392 -6.0768 35 1 7.3956 -2.4791 -5.8580 36 1 4.6864 -4.9240 -5.1628 37 1 5.4580 -3.5639 -4.2376 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_11987232_15704118.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 03:27:25 Heat of formation + Delta-G solvation = 51.826062 kcal Electronic energy + Delta-G solvation = -21436.046036 eV Core-core repulsion = 18080.686485 eV Total energy + Delta-G solvation = -3355.359551 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 305.087 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.65773 -40.75402 -39.73665 -38.02449 -37.54870 -34.78588 -31.97075 -31.23941 -30.67383 -27.04956 -26.80200 -26.13268 -24.55688 -23.55129 -23.04829 -21.50936 -20.36174 -19.66914 -19.33236 -18.12566 -17.42429 -16.93808 -16.76770 -16.66744 -16.37568 -16.16567 -15.82853 -15.58715 -15.42170 -15.07258 -14.92563 -14.41129 -14.14104 -13.98391 -13.72956 -13.54853 -13.19810 -12.86447 -12.72345 -12.48497 -12.46396 -12.04181 -11.99746 -11.59799 -11.37904 -11.18159 -10.83617 -10.30380 -10.18549 -9.99379 -9.19509 -8.80540 -5.11521 -0.09998 -0.02972 0.35040 0.44897 0.63248 1.25831 1.56937 1.87812 1.94259 2.06729 2.20809 2.79948 3.28309 3.36206 3.48564 3.59714 3.69263 3.75557 3.89427 3.92056 3.98313 4.22077 4.29405 4.46037 4.47369 4.52796 4.61198 4.65420 4.69582 4.71736 4.78468 4.86461 4.90440 5.04765 5.14481 5.33319 5.44926 5.57965 5.76049 5.84192 6.08475 6.44875 6.72542 6.96560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.550 6.550 2 C -0.014 4.014 3 Si 0.731 3.269 4 C -0.307 4.307 5 C 0.103 3.897 6 N -0.576 5.576 7 C 0.315 3.685 8 N -0.669 5.669 9 C 0.145 3.855 10 H 0.105 0.895 11 C -0.125 4.125 12 C 0.052 3.948 13 H 0.111 0.889 14 O -0.315 6.315 15 C 0.112 3.888 16 C -0.172 4.172 17 C -0.087 4.087 18 C -0.168 4.168 19 C -0.089 4.089 20 C -0.218 4.218 21 C -0.166 4.166 22 S 0.124 5.876 23 H 0.395 0.605 24 H 0.118 0.882 25 H -0.273 1.273 26 H -0.267 1.267 27 H 0.178 0.822 28 H 0.425 0.575 29 H 0.100 0.900 30 H 0.111 0.889 31 H 0.133 0.867 32 H 0.147 0.853 33 H 0.141 0.859 34 H 0.142 0.858 35 H 0.139 0.861 36 H 0.096 0.904 37 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.088 3.766 -3.034 4.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.358 6.358 2 C -0.128 4.128 3 Si 0.634 3.366 4 C -0.430 4.430 5 C -0.048 4.048 6 N -0.301 5.301 7 C -0.055 4.055 8 N -0.309 5.309 9 C 0.037 3.963 10 H 0.123 0.877 11 C -0.163 4.163 12 C -0.004 4.004 13 H 0.128 0.872 14 O -0.229 6.229 15 C 0.067 3.933 16 C -0.191 4.191 17 C -0.105 4.105 18 C -0.186 4.186 19 C -0.107 4.107 20 C -0.236 4.236 21 C -0.206 4.206 22 S 0.373 5.627 23 H 0.245 0.755 24 H 0.135 0.865 25 H -0.198 1.198 26 H -0.193 1.193 27 H 0.195 0.805 28 H 0.265 0.735 29 H 0.119 0.881 30 H 0.130 0.870 31 H 0.151 0.849 32 H 0.165 0.835 33 H 0.159 0.841 34 H 0.160 0.840 35 H 0.157 0.843 36 H 0.115 0.885 37 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.895 4.218 -2.625 5.317 hybrid contribution -0.133 -1.052 0.753 1.301 sum 1.763 3.166 -1.873 4.079 Atomic orbital electron populations 1.86481 1.16901 1.82116 1.50295 1.24237 0.84952 1.09336 0.94248 0.94119 0.79142 0.75838 0.87476 1.25738 1.12876 0.99159 1.05191 1.21430 0.97721 0.93666 0.91944 1.66464 1.17912 1.34717 1.11048 1.23884 0.94946 0.94069 0.92580 1.43701 1.54269 1.14007 1.18954 1.21542 0.98553 0.83420 0.92782 0.87746 1.23565 0.92367 1.05345 0.95071 1.24400 0.93300 0.93561 0.89132 0.87165 1.86145 1.17261 1.57592 1.61872 1.19261 0.83087 0.95793 0.95205 1.20730 0.94916 1.03304 1.00141 1.21309 0.93030 0.97383 0.98736 1.21426 1.01304 0.98502 0.97403 1.21302 0.93535 0.98304 0.97559 1.21456 0.96109 1.03121 1.02921 1.24060 0.97849 1.01472 0.97169 1.83826 1.50578 1.12432 1.15864 0.75457 0.86466 1.19819 1.19329 0.80537 0.73508 0.88135 0.87035 0.84904 0.83526 0.84140 0.83996 0.84320 0.88507 0.90997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 0.13 12.87 -148.98 -1.92 -1.79 16 2 C -0.01 0.01 2.99 71.24 0.21 0.22 16 3 Si 0.73 -1.49 31.05 68.60 2.13 0.64 16 4 C -0.31 -0.24 5.74 24.57 0.14 -0.10 16 5 C 0.10 0.39 11.22 83.54 0.94 1.32 16 6 N -0.58 -3.19 9.83 -202.03 -1.99 -5.17 16 7 C 0.32 0.39 8.09 179.32 1.45 1.84 16 8 N -0.67 2.29 5.42 -327.62 -1.77 0.52 16 9 C 0.15 -0.38 4.45 45.58 0.20 -0.17 16 10 H 0.10 0.08 7.66 -2.39 -0.02 0.06 16 11 C -0.13 0.61 7.66 31.12 0.24 0.84 16 12 C 0.05 -0.12 3.48 31.12 0.11 -0.01 16 13 H 0.11 -0.57 6.08 -2.38 -0.01 -0.58 16 14 O -0.31 -1.21 10.15 -92.44 -0.94 -2.15 16 15 C 0.11 0.51 6.68 22.51 0.15 0.66 16 16 C -0.17 -0.69 9.99 22.37 0.22 -0.47 16 17 C -0.09 -0.13 10.04 22.25 0.22 0.09 16 18 C -0.17 -0.14 10.04 22.28 0.22 0.08 16 19 C -0.09 -0.08 10.04 22.25 0.22 0.15 16 20 C -0.22 -0.42 9.01 22.37 0.20 -0.22 16 21 C -0.17 0.20 7.72 31.18 0.24 0.44 16 22 S 0.12 -0.20 20.57 -56.49 -1.16 -1.36 16 23 H 0.40 -3.09 8.70 -74.06 -0.64 -3.74 16 24 H 0.12 -0.01 7.96 -2.39 -0.02 -0.03 16 25 H -0.27 -1.13 7.11 99.48 0.71 -0.42 16 26 H -0.27 -0.63 7.11 99.48 0.71 0.08 16 27 H 0.18 0.41 8.06 -2.91 -0.02 0.38 16 28 H 0.43 -3.56 8.83 -92.70 -0.82 -4.38 16 29 H 0.10 -0.76 8.14 -2.39 -0.02 -0.78 16 30 H 0.11 -0.48 8.14 -2.39 -0.02 -0.50 16 31 H 0.13 0.31 8.06 -2.91 -0.02 0.28 16 32 H 0.15 -0.43 8.06 -2.91 -0.02 -0.46 16 33 H 0.14 -0.44 8.06 -2.91 -0.02 -0.47 16 34 H 0.14 -0.50 8.06 -2.91 -0.02 -0.52 16 35 H 0.14 -0.26 5.97 -2.91 -0.02 -0.28 16 36 H 0.10 0.04 8.14 -2.38 -0.02 0.02 16 37 H 0.07 0.00 8.14 -2.39 -0.02 -0.02 16 Total: 0.00 -14.79 329.30 -1.18 -15.97 By element: Atomic # 1 Polarization: -11.03 SS G_CDS: -0.31 Total: -11.34 kcal Atomic # 6 Polarization: -0.09 SS G_CDS: 4.78 Total: 4.68 kcal Atomic # 7 Polarization: -0.89 SS G_CDS: -3.76 Total: -4.66 kcal Atomic # 8 Polarization: -1.08 SS G_CDS: -2.86 Total: -3.94 kcal Atomic # 14 Polarization: -1.49 SS G_CDS: 2.13 Total: 0.64 kcal Atomic # 16 Polarization: -0.20 SS G_CDS: -1.16 Total: -1.36 kcal Total: -14.79 -1.18 -15.97 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_11987232_15704118.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.798 kcal (2) G-P(sol) polarization free energy of solvation -14.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.972 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds