Wall clock time and date at job start Mon Mar 8 2021 03:27:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.33321 * 125.95488 * 2 1 4 4 C 1.50710 * 122.70859 * 359.97438 * 3 2 1 5 5 O 1.42899 * 109.46660 * 30.00142 * 4 3 2 6 6 Si 1.86299 * 109.46926 * 150.00007 * 4 3 2 7 7 N 1.32123 * 114.58235 * 179.75317 * 3 2 1 8 8 C 1.29688 * 116.86334 * 0.47272 * 7 3 2 9 9 N 1.38601 * 124.94735 * 179.81203 * 8 7 3 10 10 C 1.46503 * 119.99963 * 179.72144 * 9 8 7 11 11 H 1.08998 * 112.85071 * 336.19440 * 10 9 8 12 12 C 1.54046 * 113.61923 * 107.50774 * 10 9 8 13 13 C 1.53781 * 86.98707 * 139.98106 * 12 10 9 14 14 H 1.08996 * 113.61650 * 219.98195 * 13 12 10 15 15 O 1.42900 * 113.61641 * 89.15688 * 13 12 10 16 16 C 1.35902 * 116.99625 * 105.71776 * 15 13 12 17 17 C 1.38738 * 120.05329 * 174.01870 * 16 15 13 18 18 C 1.38151 * 119.93905 * 179.76875 * 17 16 15 19 19 C 1.38262 * 120.05756 * 0.50783 * 18 17 16 20 20 C 1.38263 * 120.11124 * 359.74730 * 19 18 17 21 21 C 1.38141 * 120.05818 * 359.97438 * 20 19 18 22 22 C 1.53781 * 87.17315 * 334.56822 * 13 12 10 23 23 S 1.70967 * 110.10031 * 359.54688 * 8 7 3 24 24 H 1.08994 * 109.46854 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46859 * 299.97665 * 1 2 3 26 26 H 1.08997 * 109.46938 * 59.97461 * 1 2 3 27 27 H 1.08998 * 109.47045 * 270.00464 * 4 3 2 28 28 H 0.96697 * 114.00127 * 60.00217 * 5 4 3 29 29 H 1.48499 * 110.00017 * 58.68157 * 6 4 3 30 30 H 1.48504 * 109.99753 * 179.97438 * 6 4 3 31 31 H 0.96998 * 120.00709 * 359.72508 * 9 8 7 32 32 H 1.08994 * 113.61905 * 25.47307 * 12 10 9 33 33 H 1.09002 * 113.69464 * 254.48934 * 12 10 9 34 34 H 1.08001 * 120.02887 * 0.02562 * 17 16 15 35 35 H 1.08005 * 119.96653 * 180.25621 * 18 17 16 36 36 H 1.08002 * 119.94024 * 179.76513 * 19 18 17 37 37 H 1.08000 * 119.96926 * 179.97438 * 20 19 18 38 38 H 1.07996 * 120.02897 * 180.02562 * 21 20 19 39 39 H 1.08998 * 113.61488 * 140.02022 * 22 13 12 40 40 H 1.08997 * 113.61651 * 270.93212 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2898 1.0792 0.0000 4 6 1.7415 2.4830 -0.0006 5 8 0.4812 2.5022 0.6727 6 14 2.9321 3.6151 0.8778 7 7 3.5851 0.8187 0.0052 8 6 3.9315 -0.4311 0.0000 9 7 5.2384 -0.8927 0.0004 10 6 5.5065 -2.3330 0.0003 11 1 4.6803 -2.9173 0.4054 12 6 6.0373 -2.8619 -1.3456 13 6 6.9929 -3.7472 -0.5283 14 1 7.9938 -3.8183 -0.9539 15 8 6.4427 -5.0214 -0.1880 16 6 6.9114 -6.0982 -0.8719 17 6 6.5147 -7.3775 -0.5102 18 6 6.9889 -8.4702 -1.2100 19 6 7.8663 -8.2904 -2.2634 20 6 8.2673 -7.0168 -2.6224 21 6 7.7916 -5.9205 -1.9295 22 6 6.8745 -2.7050 0.5963 23 16 2.5413 -1.4261 0.0001 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5135 0.8902 26 1 -0.3633 0.5142 -0.8897 27 1 1.6096 2.8211 -1.0284 28 1 0.5231 2.2127 1.5943 29 1 4.2561 3.5795 0.2062 30 1 2.4032 5.0027 0.8835 31 1 5.9756 -0.2623 0.0008 32 1 6.5462 -2.1049 -1.9422 33 1 5.2997 -3.4265 -1.9160 34 1 5.8325 -7.5188 0.3151 35 1 6.6770 -9.4660 -0.9315 36 1 8.2387 -9.1462 -2.8067 37 1 8.9531 -6.8790 -3.4453 38 1 8.1048 -4.9259 -2.2106 39 1 6.8122 -3.1428 1.5926 40 1 7.6118 -1.9051 0.5297 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_11987232_15704122.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 03:27:29 Heat of formation + Delta-G solvation = 44.983208 kcal Electronic energy + Delta-G solvation = -23433.735047 eV Core-core repulsion = 19922.541149 eV Total energy + Delta-G solvation = -3511.193898 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 319.103 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.75348 -40.95795 -39.88566 -38.03925 -37.41210 -35.02580 -32.47026 -31.96650 -30.69966 -29.26687 -27.11547 -26.27590 -25.43679 -24.22447 -23.47979 -23.39134 -21.30605 -20.31411 -19.59186 -18.83853 -17.84637 -17.45383 -17.17655 -17.01988 -16.74519 -16.52293 -16.00905 -15.71433 -15.56739 -15.32604 -15.18654 -14.43636 -14.22707 -14.13047 -14.08830 -13.77771 -13.72110 -13.58674 -13.39776 -13.33409 -12.81069 -12.57390 -12.54111 -12.35665 -12.08801 -11.80406 -11.64883 -11.50131 -10.98341 -10.54070 -10.30722 -9.99528 -9.94042 -9.21580 -8.60477 -4.82843 0.05573 0.21690 0.34652 0.44717 0.82143 1.41383 1.85706 1.92717 1.93512 1.96868 2.27168 2.78654 3.10048 3.18690 3.39530 3.44588 3.57000 3.67174 3.76929 3.87806 4.01489 4.19353 4.22414 4.34183 4.37044 4.37447 4.41659 4.46630 4.57780 4.59054 4.64735 4.71671 4.79308 4.83889 4.93386 5.01583 5.11799 5.29943 5.32961 5.43125 5.57132 5.58908 5.77520 6.25735 6.37317 6.52192 6.98801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C -0.238 4.238 3 C 0.064 3.936 4 C -0.033 4.033 5 O -0.536 6.536 6 Si 0.717 3.283 7 N -0.544 5.544 8 C 0.318 3.682 9 N -0.685 5.685 10 C 0.134 3.866 11 H 0.114 0.886 12 C -0.173 4.173 13 C 0.058 3.942 14 H 0.098 0.902 15 O -0.294 6.294 16 C 0.127 3.873 17 C -0.151 4.151 18 C -0.080 4.080 19 C -0.157 4.157 20 C -0.080 4.080 21 C -0.208 4.208 22 C -0.136 4.136 23 S 0.102 5.898 24 H 0.057 0.943 25 H 0.083 0.917 26 H 0.074 0.926 27 H 0.119 0.881 28 H 0.379 0.621 29 H -0.253 1.253 30 H -0.262 1.262 31 H 0.413 0.587 32 H 0.103 0.897 33 H 0.085 0.915 34 H 0.131 0.869 35 H 0.131 0.869 36 H 0.125 0.875 37 H 0.125 0.875 38 H 0.129 0.871 39 H 0.093 0.907 40 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.158 -3.188 1.567 4.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.361 4.361 3 C -0.066 4.066 4 C -0.146 4.146 5 O -0.340 6.340 6 Si 0.618 3.382 7 N -0.270 5.270 8 C -0.054 4.054 9 N -0.324 5.324 10 C 0.029 3.971 11 H 0.132 0.868 12 C -0.213 4.213 13 C 0.001 3.999 14 H 0.116 0.884 15 O -0.207 6.207 16 C 0.082 3.918 17 C -0.170 4.170 18 C -0.098 4.098 19 C -0.175 4.175 20 C -0.099 4.099 21 C -0.227 4.227 22 C -0.174 4.174 23 S 0.351 5.649 24 H 0.076 0.924 25 H 0.101 0.899 26 H 0.093 0.907 27 H 0.137 0.863 28 H 0.226 0.774 29 H -0.177 1.177 30 H -0.188 1.188 31 H 0.251 0.749 32 H 0.121 0.879 33 H 0.104 0.896 34 H 0.149 0.851 35 H 0.148 0.852 36 H 0.143 0.857 37 H 0.143 0.857 38 H 0.147 0.853 39 H 0.112 0.888 40 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 2.591 -3.121 1.094 4.202 hybrid contribution 0.112 0.715 -0.863 1.126 sum 2.703 -2.407 0.231 3.627 Atomic orbital electron populations 1.20153 0.86349 1.01662 1.03729 1.25167 1.01342 0.92752 1.16802 1.20113 0.86769 0.97173 1.02564 1.24524 0.92361 0.95540 1.02199 1.86522 1.28917 1.89571 1.29020 0.94073 0.77564 0.76412 0.90186 1.65979 1.17295 1.16655 1.27099 1.23310 0.91904 0.91516 0.98635 1.43965 1.01841 1.06537 1.80107 1.22716 0.98203 0.79335 0.96891 0.86805 1.24178 1.00018 0.99369 0.97685 1.23116 0.97754 0.81494 0.97552 0.88439 1.86068 1.61934 1.13521 1.59201 1.19006 0.94010 0.87150 0.91595 1.20495 1.04157 0.89471 1.02842 1.21039 0.95819 0.98380 0.94593 1.21145 1.00033 0.97371 0.98944 1.21002 0.98189 0.92164 0.98503 1.21278 1.02405 1.00217 0.98783 1.23569 0.96616 0.97346 0.99849 1.84047 0.96496 1.10453 1.73907 0.92355 0.89860 0.90695 0.86345 0.77372 1.17685 1.18789 0.74893 0.87866 0.89599 0.85083 0.85157 0.85725 0.85676 0.85324 0.88820 0.87293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.01 8.91 36.01 0.32 0.31 16 2 C -0.24 -0.44 6.50 -36.02 -0.23 -0.68 16 3 C 0.06 0.16 5.92 -84.18 -0.50 -0.33 16 4 C -0.03 -0.05 2.94 36.01 0.11 0.06 16 5 O -0.54 -0.16 10.17 -35.23 -0.36 -0.52 16 6 Si 0.72 0.86 32.08 -169.99 -5.45 -4.60 16 7 N -0.54 -1.84 8.94 -11.36 -0.10 -1.95 16 8 C 0.32 0.62 8.24 -87.69 -0.72 -0.10 16 9 N -0.68 0.34 5.51 -54.85 -0.30 0.04 16 10 C 0.13 -0.22 4.17 -66.97 -0.28 -0.50 16 11 H 0.11 -0.10 7.06 -51.93 -0.37 -0.46 16 12 C -0.17 0.34 7.73 -25.78 -0.20 0.14 16 13 C 0.06 -0.11 3.74 -25.92 -0.10 -0.21 16 14 H 0.10 -0.28 5.96 -51.93 -0.31 -0.59 16 15 O -0.29 -0.20 10.06 -19.43 -0.20 -0.40 16 16 C 0.13 0.15 6.68 -39.21 -0.26 -0.11 16 17 C -0.15 -0.14 9.99 -39.43 -0.39 -0.54 16 18 C -0.08 -0.01 10.04 -39.60 -0.40 -0.41 16 19 C -0.16 -0.02 10.04 -39.56 -0.40 -0.42 16 20 C -0.08 -0.01 10.04 -39.61 -0.40 -0.41 16 21 C -0.21 -0.07 9.01 -39.43 -0.36 -0.43 16 22 C -0.14 0.40 7.66 -25.91 -0.20 0.20 16 23 S 0.10 0.13 21.69 -107.50 -2.33 -2.20 16 24 H 0.06 -0.02 8.14 -51.93 -0.42 -0.44 16 25 H 0.08 -0.08 6.40 -51.93 -0.33 -0.42 16 26 H 0.07 0.06 8.14 -51.93 -0.42 -0.36 16 27 H 0.12 0.22 7.96 -51.93 -0.41 -0.19 16 28 H 0.38 -1.20 8.13 45.56 0.37 -0.83 16 29 H -0.25 -1.16 7.11 56.52 0.40 -0.76 16 30 H -0.26 -0.94 7.11 56.52 0.40 -0.54 16 31 H 0.41 -0.61 8.85 -40.82 -0.36 -0.97 16 32 H 0.10 -0.28 8.14 -51.93 -0.42 -0.71 16 33 H 0.09 -0.07 8.14 -51.93 -0.42 -0.49 16 34 H 0.13 -0.02 8.06 -52.49 -0.42 -0.44 16 35 H 0.13 -0.24 8.06 -52.48 -0.42 -0.66 16 36 H 0.12 -0.19 8.06 -52.49 -0.42 -0.62 16 37 H 0.13 -0.22 8.06 -52.49 -0.42 -0.64 16 38 H 0.13 -0.19 5.92 -52.49 -0.31 -0.50 16 39 H 0.09 -0.24 8.14 -51.93 -0.42 -0.66 16 40 H 0.11 -0.50 8.12 -51.93 -0.42 -0.92 16 LS Contribution 345.62 15.07 5.21 5.21 Total: 0.00 -6.34 345.62 -12.69 -19.03 By element: Atomic # 1 Polarization: -6.05 SS G_CDS: -5.15 Total: -11.20 kcal Atomic # 6 Polarization: 0.59 SS G_CDS: -4.01 Total: -3.42 kcal Atomic # 7 Polarization: -1.50 SS G_CDS: -0.40 Total: -1.91 kcal Atomic # 8 Polarization: -0.36 SS G_CDS: -0.55 Total: -0.92 kcal Atomic # 14 Polarization: 0.86 SS G_CDS: -5.45 Total: -4.60 kcal Atomic # 16 Polarization: 0.13 SS G_CDS: -2.33 Total: -2.20 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -6.34 -12.69 -19.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_11987232_15704122.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.015 kcal (2) G-P(sol) polarization free energy of solvation -6.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.032 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds