Wall clock time and date at job start Mon Mar 8 2021 03:27:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.33321 * 125.95488 * 2 1 4 4 C 1.50710 * 122.70859 * 359.97438 * 3 2 1 5 5 O 1.42899 * 109.46660 * 30.00142 * 4 3 2 6 6 Si 1.86299 * 109.46926 * 150.00007 * 4 3 2 7 7 N 1.32123 * 114.58235 * 179.75317 * 3 2 1 8 8 C 1.29688 * 116.86334 * 0.47272 * 7 3 2 9 9 N 1.38601 * 124.94735 * 179.81203 * 8 7 3 10 10 C 1.46503 * 119.99963 * 179.72144 * 9 8 7 11 11 H 1.08998 * 112.85071 * 336.19440 * 10 9 8 12 12 C 1.54046 * 113.61923 * 107.50774 * 10 9 8 13 13 C 1.53781 * 86.98707 * 139.98106 * 12 10 9 14 14 H 1.08996 * 113.61650 * 219.98195 * 13 12 10 15 15 O 1.42900 * 113.61641 * 89.15688 * 13 12 10 16 16 C 1.35902 * 116.99625 * 105.71776 * 15 13 12 17 17 C 1.38738 * 120.05329 * 174.01870 * 16 15 13 18 18 C 1.38151 * 119.93905 * 179.76875 * 17 16 15 19 19 C 1.38262 * 120.05756 * 0.50783 * 18 17 16 20 20 C 1.38263 * 120.11124 * 359.74730 * 19 18 17 21 21 C 1.38141 * 120.05818 * 359.97438 * 20 19 18 22 22 C 1.53781 * 87.17315 * 334.56822 * 13 12 10 23 23 S 1.70967 * 110.10031 * 359.54688 * 8 7 3 24 24 H 1.08994 * 109.46854 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46859 * 299.97665 * 1 2 3 26 26 H 1.08997 * 109.46938 * 59.97461 * 1 2 3 27 27 H 1.08998 * 109.47045 * 270.00464 * 4 3 2 28 28 H 0.96697 * 114.00127 * 60.00217 * 5 4 3 29 29 H 1.48499 * 110.00017 * 58.68157 * 6 4 3 30 30 H 1.48504 * 109.99753 * 179.97438 * 6 4 3 31 31 H 0.96998 * 120.00709 * 359.72508 * 9 8 7 32 32 H 1.08994 * 113.61905 * 25.47307 * 12 10 9 33 33 H 1.09002 * 113.69464 * 254.48934 * 12 10 9 34 34 H 1.08001 * 120.02887 * 0.02562 * 17 16 15 35 35 H 1.08005 * 119.96653 * 180.25621 * 18 17 16 36 36 H 1.08002 * 119.94024 * 179.76513 * 19 18 17 37 37 H 1.08000 * 119.96926 * 179.97438 * 20 19 18 38 38 H 1.07996 * 120.02897 * 180.02562 * 21 20 19 39 39 H 1.08998 * 113.61488 * 140.02022 * 22 13 12 40 40 H 1.08997 * 113.61651 * 270.93212 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2898 1.0792 0.0000 4 6 1.7415 2.4830 -0.0006 5 8 0.4812 2.5022 0.6727 6 14 2.9321 3.6151 0.8778 7 7 3.5851 0.8187 0.0052 8 6 3.9315 -0.4311 0.0000 9 7 5.2384 -0.8927 0.0004 10 6 5.5065 -2.3330 0.0003 11 1 4.6803 -2.9173 0.4054 12 6 6.0373 -2.8619 -1.3456 13 6 6.9929 -3.7472 -0.5283 14 1 7.9938 -3.8183 -0.9539 15 8 6.4427 -5.0214 -0.1880 16 6 6.9114 -6.0982 -0.8719 17 6 6.5147 -7.3775 -0.5102 18 6 6.9889 -8.4702 -1.2100 19 6 7.8663 -8.2904 -2.2634 20 6 8.2673 -7.0168 -2.6224 21 6 7.7916 -5.9205 -1.9295 22 6 6.8745 -2.7050 0.5963 23 16 2.5413 -1.4261 0.0001 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5135 0.8902 26 1 -0.3633 0.5142 -0.8897 27 1 1.6096 2.8211 -1.0284 28 1 0.5231 2.2127 1.5943 29 1 4.2561 3.5795 0.2062 30 1 2.4032 5.0027 0.8835 31 1 5.9756 -0.2623 0.0008 32 1 6.5462 -2.1049 -1.9422 33 1 5.2997 -3.4265 -1.9160 34 1 5.8325 -7.5188 0.3151 35 1 6.6770 -9.4660 -0.9315 36 1 8.2387 -9.1462 -2.8067 37 1 8.9531 -6.8790 -3.4453 38 1 8.1048 -4.9259 -2.2106 39 1 6.8122 -3.1428 1.5926 40 1 7.6118 -1.9051 0.5297 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_11987232_15704122.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 03:27:29 Heat of formation + Delta-G solvation = 50.442336 kcal Electronic energy + Delta-G solvation = -23433.498322 eV Core-core repulsion = 19922.541149 eV Total energy + Delta-G solvation = -3510.957173 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 319.103 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.67819 -41.05165 -39.82035 -38.04408 -37.40957 -35.01309 -32.50659 -31.93088 -30.66682 -29.33578 -26.93902 -26.23425 -25.48744 -24.27995 -23.45238 -23.34213 -21.28246 -20.30678 -19.57226 -18.85403 -17.88874 -17.46495 -17.11087 -16.95963 -16.70798 -16.60883 -15.96352 -15.71532 -15.63543 -15.28740 -15.21868 -14.38362 -14.33345 -14.16783 -14.03146 -13.83562 -13.60181 -13.53523 -13.42636 -13.23707 -12.79257 -12.57316 -12.49078 -12.40787 -12.13228 -11.96083 -11.54436 -11.38788 -10.97924 -10.66079 -10.41114 -10.04530 -9.97491 -9.19920 -8.66013 -4.96337 -0.04982 0.13175 0.36861 0.45618 0.72180 1.29184 1.72457 1.81372 1.90187 2.04194 2.10650 2.80988 3.24002 3.33747 3.37775 3.52886 3.59594 3.82131 3.85233 3.95036 4.11319 4.16505 4.30681 4.30913 4.43472 4.48107 4.49512 4.58409 4.59566 4.68633 4.79834 4.82728 4.85734 4.88194 4.93042 5.06442 5.09782 5.32194 5.33050 5.46809 5.59808 5.60507 5.84058 6.28676 6.42345 6.65859 6.91285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C -0.245 4.245 3 C 0.052 3.948 4 C -0.031 4.031 5 O -0.540 6.540 6 Si 0.793 3.207 7 N -0.570 5.570 8 C 0.309 3.691 9 N -0.676 5.676 10 C 0.131 3.869 11 H 0.104 0.896 12 C -0.167 4.167 13 C 0.054 3.946 14 H 0.110 0.890 15 O -0.307 6.307 16 C 0.112 3.888 17 C -0.170 4.170 18 C -0.088 4.088 19 C -0.168 4.168 20 C -0.090 4.090 21 C -0.216 4.216 22 C -0.124 4.124 23 S 0.110 5.890 24 H 0.063 0.937 25 H 0.097 0.903 26 H 0.068 0.932 27 H 0.112 0.888 28 H 0.395 0.605 29 H -0.300 1.300 30 H -0.293 1.293 31 H 0.418 0.582 32 H 0.114 0.886 33 H 0.072 0.928 34 H 0.134 0.866 35 H 0.147 0.853 36 H 0.140 0.860 37 H 0.142 0.858 38 H 0.144 0.856 39 H 0.091 0.909 40 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.488 -3.580 1.686 4.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.368 4.368 3 C -0.078 4.078 4 C -0.144 4.144 5 O -0.347 6.347 6 Si 0.700 3.300 7 N -0.297 5.297 8 C -0.062 4.062 9 N -0.316 5.316 10 C 0.025 3.975 11 H 0.122 0.878 12 C -0.207 4.207 13 C -0.003 4.003 14 H 0.128 0.872 15 O -0.221 6.221 16 C 0.068 3.932 17 C -0.188 4.188 18 C -0.105 4.105 19 C -0.186 4.186 20 C -0.108 4.108 21 C -0.234 4.234 22 C -0.162 4.162 23 S 0.359 5.641 24 H 0.082 0.918 25 H 0.115 0.885 26 H 0.087 0.913 27 H 0.129 0.871 28 H 0.245 0.755 29 H -0.228 1.228 30 H -0.221 1.221 31 H 0.257 0.743 32 H 0.132 0.868 33 H 0.091 0.909 34 H 0.152 0.848 35 H 0.164 0.836 36 H 0.158 0.842 37 H 0.160 0.840 38 H 0.161 0.839 39 H 0.110 0.890 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 2.917 -3.539 1.235 4.749 hybrid contribution 0.045 0.816 -0.927 1.236 sum 2.961 -2.723 0.309 4.035 Atomic orbital electron populations 1.20193 0.85309 1.02150 1.04051 1.25411 1.02139 0.92780 1.16476 1.20258 0.86755 0.97722 1.03071 1.24473 0.92768 0.95174 1.01996 1.86490 1.28169 1.89621 1.30387 0.93173 0.73936 0.74019 0.88914 1.65988 1.17889 1.17467 1.28379 1.23546 0.92879 0.91424 0.98340 1.44067 1.01204 1.07093 1.79259 1.22782 0.98694 0.78508 0.97478 0.87773 1.24149 0.99746 0.99383 0.97396 1.23265 0.98160 0.80741 0.98156 0.87201 1.86048 1.62434 1.14217 1.59446 1.19209 0.94484 0.87420 0.92122 1.20714 1.04754 0.89954 1.03427 1.21302 0.95722 0.98985 0.94539 1.21433 1.00001 0.98069 0.99057 1.21308 0.98374 0.92165 0.98922 1.21501 1.02229 1.01144 0.98572 1.23578 0.96053 0.97311 0.99289 1.83983 0.96151 1.10102 1.73839 0.91782 0.88500 0.91316 0.87061 0.75500 1.22758 1.22140 0.74305 0.86750 0.90894 0.84827 0.83575 0.84231 0.83997 0.83876 0.89038 0.85190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.01 8.91 71.24 0.63 0.63 16 2 C -0.25 -0.94 6.50 24.57 0.16 -0.79 16 3 C 0.05 0.29 5.92 41.41 0.25 0.53 16 4 C -0.03 -0.10 2.94 71.24 0.21 0.11 16 5 O -0.54 -0.10 10.17 -148.98 -1.52 -1.61 16 6 Si 0.79 2.54 32.08 68.60 2.20 4.74 16 7 N -0.57 -4.23 8.94 -189.86 -1.70 -5.93 16 8 C 0.31 1.34 8.24 179.32 1.48 2.81 16 9 N -0.68 0.64 5.51 -327.46 -1.81 -1.17 16 10 C 0.13 -0.43 4.17 45.61 0.19 -0.24 16 11 H 0.10 -0.11 7.06 -2.39 -0.02 -0.13 16 12 C -0.17 0.67 7.73 31.21 0.24 0.91 16 13 C 0.05 -0.21 3.74 31.12 0.12 -0.10 16 14 H 0.11 -0.72 5.96 -2.39 -0.01 -0.73 16 15 O -0.31 -0.58 10.06 -92.44 -0.93 -1.51 16 16 C 0.11 0.34 6.68 22.51 0.15 0.49 16 17 C -0.17 -0.46 9.99 22.37 0.22 -0.24 16 18 C -0.09 -0.05 10.04 22.25 0.22 0.17 16 19 C -0.17 -0.01 10.04 22.28 0.22 0.22 16 20 C -0.09 0.01 10.04 22.25 0.22 0.23 16 21 C -0.22 -0.13 9.01 22.37 0.20 0.07 16 22 C -0.12 0.81 7.66 31.12 0.24 1.05 16 23 S 0.11 0.32 21.69 -56.49 -1.23 -0.91 16 24 H 0.06 -0.07 8.14 -2.39 -0.02 -0.09 16 25 H 0.10 -0.28 6.40 -2.39 -0.02 -0.30 16 26 H 0.07 0.11 8.14 -2.39 -0.02 0.09 16 27 H 0.11 0.50 7.96 -2.39 -0.02 0.49 16 28 H 0.39 -2.87 8.13 -74.06 -0.60 -3.47 16 29 H -0.30 -3.34 7.11 99.48 0.71 -2.63 16 30 H -0.29 -2.40 7.11 99.48 0.71 -1.70 16 31 H 0.42 -1.31 8.85 -92.71 -0.82 -2.13 16 32 H 0.11 -0.71 8.14 -2.39 -0.02 -0.73 16 33 H 0.07 -0.07 8.14 -2.39 -0.02 -0.09 16 34 H 0.13 0.13 8.06 -2.91 -0.02 0.11 16 35 H 0.15 -0.54 8.06 -2.91 -0.02 -0.56 16 36 H 0.14 -0.52 8.06 -2.91 -0.02 -0.55 16 37 H 0.14 -0.61 8.06 -2.91 -0.02 -0.63 16 38 H 0.14 -0.49 5.92 -2.91 -0.02 -0.51 16 39 H 0.09 -0.50 8.14 -2.39 -0.02 -0.52 16 40 H 0.13 -1.39 8.12 -2.39 -0.02 -1.41 16 Total: 0.00 -15.53 345.62 -0.52 -16.04 By element: Atomic # 1 Polarization: -15.21 SS G_CDS: -0.30 Total: -15.51 kcal Atomic # 6 Polarization: 1.10 SS G_CDS: 4.76 Total: 5.85 kcal Atomic # 7 Polarization: -3.59 SS G_CDS: -3.50 Total: -7.09 kcal Atomic # 8 Polarization: -0.68 SS G_CDS: -2.45 Total: -3.13 kcal Atomic # 14 Polarization: 2.54 SS G_CDS: 2.20 Total: 4.74 kcal Atomic # 16 Polarization: 0.32 SS G_CDS: -1.23 Total: -0.91 kcal Total: -15.53 -0.52 -16.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_11987232_15704122.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.486 kcal (2) G-P(sol) polarization free energy of solvation -15.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.044 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds