Wall clock time and date at job start Mon Mar 8 2021 03:27:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86299 * 109.47293 * 2 1 4 4 C 1.50695 * 109.47230 * 239.99517 * 2 1 3 5 5 C 1.37983 * 120.32786 * 120.00397 * 4 2 1 6 6 N 1.32005 * 120.90227 * 180.27459 * 5 4 2 7 7 C 1.32335 * 121.64700 * 359.47731 * 6 5 4 8 8 N 1.39146 * 119.71816 * 180.28607 * 7 6 5 9 9 C 1.46500 * 119.99963 * 0.22941 * 8 7 6 10 10 H 1.08997 * 112.85345 * 334.66760 * 9 8 7 11 11 C 1.53779 * 113.61005 * 105.86572 * 9 8 7 12 12 C 1.54045 * 86.99005 * 89.16000 * 11 9 8 13 13 H 1.09001 * 113.61341 * 270.88464 * 12 11 9 14 14 O 1.42898 * 113.62232 * 139.97649 * 12 11 9 15 15 C 1.35892 * 117.00302 * 104.62025 * 14 12 11 16 16 C 1.38735 * 120.05896 * 173.78053 * 15 14 12 17 17 C 1.38149 * 119.94221 * 179.74461 * 16 15 14 18 18 C 1.38261 * 120.05586 * 0.51076 * 17 16 15 19 19 C 1.38264 * 120.11370 * 359.76559 * 18 17 16 20 20 C 1.38146 * 120.05367 * 359.97438 * 19 18 17 21 21 C 1.53779 * 113.61404 * 203.46815 * 9 8 7 22 22 C 1.39345 * 120.56412 * 0.52010 * 7 6 5 23 23 F 1.35092 * 120.47236 * 179.72240 * 22 7 6 24 24 C 1.38445 * 119.05220 * 359.74493 * 22 7 6 25 25 H 0.96695 * 113.99948 * 60.00427 * 1 2 3 26 26 H 1.09013 * 109.46670 * 119.99634 * 2 1 3 27 27 H 1.48499 * 110.00122 * 59.99722 * 3 2 1 28 28 H 1.48499 * 110.00118 * 181.31532 * 3 2 1 29 29 H 1.08003 * 119.54517 * 359.97438 * 5 4 2 30 30 H 0.96997 * 119.99591 * 180.23512 * 8 7 6 31 31 H 1.09006 * 113.61382 * 203.66383 * 11 9 8 32 32 H 1.09002 * 113.61705 * 334.55896 * 11 9 8 33 33 H 1.08001 * 120.02742 * 359.97438 * 16 15 14 34 34 H 1.08005 * 119.96793 * 180.27515 * 17 16 15 35 35 H 1.08001 * 119.94245 * 179.74987 * 18 17 16 36 36 H 1.08002 * 119.97172 * 180.02562 * 19 18 17 37 37 H 1.08004 * 120.02532 * 179.97438 * 20 19 18 38 38 H 1.09001 * 113.61372 * 25.43344 * 21 9 8 39 39 H 1.08999 * 113.61693 * 156.34009 * 21 9 8 40 40 H 1.08004 * 120.75474 * 180.02562 * 24 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7105 -1.2304 5 6 2.7251 -0.0465 -2.1431 6 7 3.1669 -0.6563 -3.2273 7 6 2.8781 -1.9232 -3.4779 8 7 3.3702 -2.5279 -4.6304 9 6 4.2083 -1.7639 -5.5578 10 1 4.0287 -0.6901 -5.5042 11 6 5.6973 -2.1432 -5.4976 12 6 5.3866 -3.2051 -6.5694 13 1 5.0852 -4.1676 -6.1559 14 8 6.4001 -3.3224 -7.5699 15 6 7.2198 -4.4037 -7.4940 16 6 8.1403 -4.6500 -8.5024 17 6 8.9760 -5.7470 -8.4202 18 6 8.8884 -6.6049 -7.3394 19 6 7.9680 -6.3647 -6.3360 20 6 7.1337 -5.2662 -6.4108 21 6 4.2034 -2.3184 -6.9921 22 6 2.0815 -2.6554 -2.5999 23 9 1.7832 -3.9470 -2.8603 24 6 1.5996 -2.0401 -1.4570 25 1 -0.3933 0.4416 -0.7650 26 1 1.7923 -0.5139 0.8901 27 1 1.5615 2.4679 1.2084 28 1 3.5346 1.7702 -0.0320 29 1 2.9844 0.9876 -1.9704 30 1 3.1582 -3.4553 -4.8198 31 1 6.3635 -1.3536 -5.8455 32 1 6.0024 -2.5640 -4.5394 33 1 8.2059 -3.9828 -9.3490 34 1 9.6958 -5.9367 -9.2028 35 1 9.5399 -7.4641 -7.2790 36 1 7.9018 -7.0361 -5.4926 37 1 6.4146 -5.0793 -5.6269 38 1 3.3031 -2.8807 -7.2398 39 1 4.4618 -1.5767 -7.7479 40 1 0.9801 -2.5819 -0.7575 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_11987232_17656566.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 03:27:32 Heat of formation + Delta-G solvation = 0.587597 kcal Electronic energy + Delta-G solvation = -25371.865986 eV Core-core repulsion = 21455.678347 eV Total energy + Delta-G solvation = -3916.187640 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 317.121 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.99541 -41.76637 -41.25289 -39.81750 -38.11781 -37.52828 -35.07268 -33.21035 -31.99565 -31.25843 -30.62748 -26.97384 -26.79120 -26.05127 -24.80233 -23.55458 -23.04664 -22.85390 -20.59747 -19.81825 -19.19463 -18.48045 -18.27511 -17.52778 -17.30729 -17.04555 -16.81211 -16.59754 -16.10510 -16.06836 -15.92410 -15.49192 -15.40859 -15.28767 -14.74631 -14.43310 -14.36397 -14.16240 -14.00397 -13.71027 -13.56856 -13.45032 -13.08095 -12.71813 -12.57206 -12.48706 -12.13257 -12.01086 -11.62162 -11.37004 -11.26581 -10.76355 -10.68987 -10.41965 -10.01119 -9.20828 -8.83696 -4.96828 -0.12010 0.06634 0.33267 0.43355 1.31893 1.66238 1.84889 2.00516 2.19744 2.50058 2.78391 2.97873 3.18511 3.35816 3.38338 3.47594 3.65138 3.70361 3.71141 3.84055 3.87935 3.94532 3.97558 4.21388 4.29466 4.40294 4.44569 4.46354 4.52594 4.65754 4.67335 4.69605 4.71525 4.85169 4.87010 4.95103 4.96633 5.03349 5.31302 5.38148 5.43484 5.56229 5.80804 5.91226 6.11201 6.43116 6.79048 6.89958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.556 6.556 2 C -0.059 4.059 3 Si 0.775 3.225 4 C -0.203 4.203 5 C 0.147 3.853 6 N -0.523 5.523 7 C 0.384 3.616 8 N -0.699 5.699 9 C 0.144 3.856 10 H 0.117 0.883 11 C -0.164 4.164 12 C 0.049 3.951 13 H 0.103 0.897 14 O -0.313 6.313 15 C 0.112 3.888 16 C -0.171 4.171 17 C -0.086 4.086 18 C -0.168 4.168 19 C -0.090 4.090 20 C -0.220 4.220 21 C -0.128 4.128 22 C -0.034 4.034 23 F -0.140 7.140 24 C -0.041 4.041 25 H 0.396 0.604 26 H 0.111 0.889 27 H -0.298 1.298 28 H -0.279 1.279 29 H 0.184 0.816 30 H 0.416 0.584 31 H 0.102 0.898 32 H 0.068 0.932 33 H 0.135 0.865 34 H 0.149 0.851 35 H 0.142 0.858 36 H 0.141 0.859 37 H 0.135 0.865 38 H 0.092 0.908 39 H 0.115 0.885 40 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.774 1.541 -1.502 2.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.364 6.364 2 C -0.170 4.170 3 Si 0.680 3.320 4 C -0.208 4.208 5 C -0.010 4.010 6 N -0.239 5.239 7 C 0.146 3.854 8 N -0.332 5.332 9 C 0.038 3.962 10 H 0.135 0.865 11 C -0.203 4.203 12 C -0.007 4.007 13 H 0.120 0.880 14 O -0.227 6.227 15 C 0.067 3.933 16 C -0.189 4.189 17 C -0.103 4.103 18 C -0.186 4.186 19 C -0.108 4.108 20 C -0.238 4.238 21 C -0.166 4.166 22 C -0.061 4.061 23 F -0.119 7.119 24 C -0.067 4.067 25 H 0.246 0.754 26 H 0.129 0.871 27 H -0.226 1.226 28 H -0.206 1.206 29 H 0.200 0.800 30 H 0.254 0.746 31 H 0.120 0.880 32 H 0.086 0.914 33 H 0.153 0.847 34 H 0.167 0.833 35 H 0.159 0.841 36 H 0.158 0.842 37 H 0.153 0.847 38 H 0.111 0.889 39 H 0.134 0.866 40 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 0.387 2.489 -1.418 2.890 hybrid contribution -0.526 -1.988 0.974 2.275 sum -0.139 0.501 -0.444 0.684 Atomic orbital electron populations 1.86478 1.17165 1.82134 1.50574 1.24990 0.85277 1.10606 0.96086 0.93794 0.78014 0.74792 0.85360 1.21009 1.04254 0.94876 1.00669 1.22713 0.91118 0.99933 0.87224 1.67330 1.26725 1.07417 1.22471 1.18490 0.90239 0.89263 0.87396 1.44261 1.54072 1.14560 1.20325 1.21492 0.89021 0.97618 0.88078 0.86485 1.24065 0.98083 0.99464 0.98671 1.24454 0.88163 0.99072 0.89037 0.87968 1.86136 1.43137 1.41351 1.52085 1.19269 0.91945 0.87328 0.94805 1.20740 0.98117 1.00747 0.99344 1.21323 0.97611 0.92966 0.98445 1.21424 1.00685 1.01374 0.95091 1.21290 0.94190 0.96267 0.99030 1.21439 1.04491 0.98263 0.99615 1.23579 0.96759 0.99429 0.96801 1.18117 1.07654 0.80840 0.99462 1.91469 1.92319 1.34079 1.94075 1.21434 0.96086 0.94732 0.94424 0.75367 0.87130 1.22586 1.20603 0.79951 0.74601 0.87982 0.91356 0.84709 0.83347 0.84062 0.84165 0.84748 0.88919 0.86638 0.82784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 1.31 12.78 -148.98 -1.90 -0.60 16 2 C -0.06 0.20 2.84 71.23 0.20 0.40 16 3 Si 0.77 -3.86 29.82 68.60 2.05 -1.81 16 4 C -0.20 0.37 5.40 -19.77 -0.11 0.27 16 5 C 0.15 -0.26 9.84 84.61 0.83 0.57 16 6 N -0.52 -0.93 9.15 -193.03 -1.77 -2.70 16 7 C 0.38 0.78 7.49 133.08 1.00 1.78 16 8 N -0.70 0.77 5.42 -321.80 -1.74 -0.97 16 9 C 0.14 -0.33 4.33 45.52 0.20 -0.14 16 10 H 0.12 -0.17 7.44 -2.39 -0.02 -0.19 16 11 C -0.16 0.13 7.73 31.21 0.24 0.37 16 12 C 0.05 -0.03 3.52 31.21 0.11 0.08 16 13 H 0.10 -0.20 6.04 -2.39 -0.01 -0.21 16 14 O -0.31 -1.52 10.15 -92.33 -0.94 -2.46 16 15 C 0.11 0.63 6.68 22.51 0.15 0.78 16 16 C -0.17 -0.78 9.99 22.37 0.22 -0.56 16 17 C -0.09 -0.18 10.04 22.25 0.22 0.05 16 18 C -0.17 -0.28 10.04 22.28 0.22 -0.06 16 19 C -0.09 -0.20 10.04 22.25 0.22 0.02 16 20 C -0.22 -0.80 9.01 22.37 0.20 -0.60 16 21 C -0.13 0.46 7.65 31.12 0.24 0.70 16 22 C -0.03 -0.09 7.35 22.59 0.17 0.08 16 23 F -0.14 -0.56 16.65 44.97 0.75 0.18 16 24 C -0.04 -0.02 9.75 22.48 0.22 0.20 16 25 H 0.40 -4.08 8.70 -74.06 -0.64 -4.72 16 26 H 0.11 -0.26 7.96 -2.38 -0.02 -0.28 16 27 H -0.30 -0.90 7.11 99.48 0.71 -0.19 16 28 H -0.28 0.17 7.11 99.48 0.71 0.88 16 29 H 0.18 -1.24 4.88 -2.91 -0.01 -1.25 16 30 H 0.42 -1.26 8.17 -92.71 -0.76 -2.02 16 31 H 0.10 -0.03 8.14 -2.38 -0.02 -0.05 16 32 H 0.07 0.07 8.14 -2.39 -0.02 0.05 16 33 H 0.13 0.35 8.06 -2.91 -0.02 0.32 16 34 H 0.15 -0.40 8.06 -2.91 -0.02 -0.43 16 35 H 0.14 -0.35 8.06 -2.91 -0.02 -0.37 16 36 H 0.14 -0.26 8.06 -2.91 -0.02 -0.29 16 37 H 0.13 0.10 5.95 -2.91 -0.02 0.08 16 38 H 0.09 -0.47 8.14 -2.39 -0.02 -0.49 16 39 H 0.12 -0.48 8.14 -2.39 -0.02 -0.50 16 40 H 0.15 -0.13 8.06 -2.91 -0.02 -0.16 16 Total: 0.00 -14.74 341.87 0.52 -14.22 By element: Atomic # 1 Polarization: -9.55 SS G_CDS: -0.27 Total: -9.81 kcal Atomic # 6 Polarization: -0.39 SS G_CDS: 4.34 Total: 3.95 kcal Atomic # 7 Polarization: -0.16 SS G_CDS: -3.51 Total: -3.67 kcal Atomic # 8 Polarization: -0.22 SS G_CDS: -2.84 Total: -3.06 kcal Atomic # 9 Polarization: -0.56 SS G_CDS: 0.75 Total: 0.18 kcal Atomic # 14 Polarization: -3.86 SS G_CDS: 2.05 Total: -1.81 kcal Total: -14.74 0.52 -14.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_11987232_17656566.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.806 kcal (2) G-P(sol) polarization free energy of solvation -14.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.218 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds