Wall clock time and date at job start Mon Mar 8 2021 04:54:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86304 * 109.46868 * 2 1 4 4 C 1.50693 * 109.47107 * 240.00053 * 2 1 3 5 5 C 1.38605 * 120.71959 * 299.99988 * 4 2 1 6 6 N 1.32275 * 119.19714 * 179.97438 * 5 4 2 7 7 C 1.32497 * 120.74066 * 359.97438 * 6 5 4 8 8 N 1.38411 * 119.21553 * 180.02562 * 7 6 5 9 9 C 1.46500 * 119.99631 * 179.97438 * 8 7 6 10 10 H 1.09001 * 112.85061 * 23.80967 * 9 8 7 11 11 C 1.53777 * 113.60994 * 155.00185 * 9 8 7 12 12 C 1.53785 * 87.08055 * 139.98201 * 11 9 8 13 13 H 1.09003 * 113.61305 * 89.19894 * 12 11 9 14 14 O 1.42900 * 113.61269 * 220.01882 * 12 11 9 15 15 C 1.35906 * 116.99750 * 203.33019 * 14 12 11 16 16 C 1.38725 * 120.05530 * 174.01941 * 15 14 12 17 17 C 1.38146 * 119.94679 * 179.76877 * 16 15 14 18 18 C 1.38272 * 120.05096 * 0.50857 * 17 16 15 19 19 C 1.38262 * 120.11311 * 359.74256 * 18 17 16 20 20 C 1.38153 * 120.05362 * 0.02562 * 19 18 17 21 21 C 1.53782 * 113.61321 * 252.49884 * 9 8 7 22 22 N 1.32489 * 121.56594 * 0.27893 * 7 6 5 23 23 C 1.32285 * 120.73862 * 359.44184 * 22 7 6 24 24 H 0.96703 * 114.00134 * 59.99744 * 1 2 3 25 25 H 1.09002 * 109.46841 * 119.99645 * 2 1 3 26 26 H 1.48499 * 110.00235 * 59.99940 * 3 2 1 27 27 H 1.48496 * 109.99649 * 181.31894 * 3 2 1 28 28 H 1.07997 * 120.40334 * 359.95259 * 5 4 2 29 29 H 0.97002 * 119.99907 * 0.02562 * 8 7 6 30 30 H 1.08997 * 113.61994 * 25.43150 * 11 9 8 31 31 H 1.09003 * 113.61682 * 254.52879 * 11 9 8 32 32 H 1.08004 * 120.03123 * 0.02562 * 16 15 14 33 33 H 1.07995 * 119.97694 * 180.25320 * 17 16 15 34 34 H 1.08001 * 119.94219 * 179.77221 * 18 17 16 35 35 H 1.07998 * 119.97318 * 179.97438 * 19 18 17 36 36 H 1.08003 * 120.02418 * 180.02562 * 20 19 18 37 37 H 1.08998 * 113.61419 * 105.47739 * 21 9 8 38 38 H 1.08998 * 113.61576 * 334.56571 * 21 9 8 39 39 H 1.07999 * 120.39929 * 180.30214 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 -1.2304 5 6 1.6056 -2.0371 -1.4646 6 7 2.0625 -2.6310 -2.5546 7 6 2.8224 -1.9719 -3.4170 8 7 3.2829 -2.6241 -4.5477 9 6 4.1237 -1.9116 -5.5128 10 1 4.6495 -1.0647 -5.0720 11 6 5.0313 -2.8371 -6.3402 12 6 4.7090 -1.9425 -7.5488 13 1 5.3954 -1.1039 -7.6667 14 8 4.5082 -2.6701 -8.7622 15 6 4.7035 -1.9954 -9.9257 16 6 4.6481 -2.6689 -11.1372 17 6 4.8422 -1.9800 -12.3188 18 6 5.1020 -0.6222 -12.2939 19 6 5.1630 0.0505 -11.0875 20 6 4.9648 -0.6331 -9.9034 21 6 3.4015 -1.5742 -6.8279 22 7 3.1560 -0.7049 -3.2203 23 6 2.7278 -0.0508 -2.1532 24 1 -0.3933 0.4417 -0.7650 25 1 1.7923 -0.5138 0.8900 26 1 1.5614 2.4680 1.2085 27 1 3.5345 1.7703 -0.0321 28 1 0.9866 -2.5795 -0.7653 29 1 3.0482 -3.5527 -4.7013 30 1 4.6487 -3.8533 -6.4349 31 1 6.0785 -2.8044 -6.0397 32 1 4.4491 -3.7303 -11.1569 33 1 4.7950 -2.5031 -13.2624 34 1 5.2572 -0.0860 -13.2185 35 1 5.3666 1.1110 -11.0707 36 1 5.0122 -0.1071 -8.9613 37 1 3.1331 -0.5219 -6.9210 38 1 2.5733 -2.2451 -7.0559 39 1 2.9991 0.9834 -2.0008 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_12060302_12175864.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:54:13 Heat of formation + Delta-G solvation = 56.091549 kcal Electronic energy + Delta-G solvation = -22852.396338 eV Core-core repulsion = 19342.643595 eV Total energy + Delta-G solvation = -3509.752743 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 300.126 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.15931 -41.45544 -39.80576 -38.18965 -37.58803 -35.27930 -34.69260 -32.15930 -31.85624 -30.65620 -27.17178 -26.93754 -26.02751 -25.33157 -23.60625 -23.30754 -22.60693 -21.00581 -19.61423 -19.35108 -18.65640 -18.06656 -17.25956 -16.81642 -16.63348 -16.57657 -16.12442 -16.07545 -15.83014 -15.53193 -15.49461 -15.13741 -14.62429 -14.36333 -14.12473 -14.04943 -13.72813 -13.63198 -13.20202 -12.92098 -12.62886 -12.39285 -12.34282 -12.21311 -11.87397 -11.78989 -11.67872 -11.49936 -11.27667 -10.61829 -10.03616 -9.93777 -9.18230 -9.09336 -5.13662 0.03651 0.13682 0.40448 0.51519 1.19967 1.52775 1.67008 1.89753 2.29233 2.77564 2.85686 3.10909 3.24907 3.31181 3.37675 3.59272 3.61655 3.63804 3.68335 3.75084 3.89778 3.96299 4.13641 4.19410 4.28164 4.45851 4.46257 4.49369 4.53384 4.55088 4.66994 4.71932 4.75864 4.79767 4.96056 5.07401 5.25277 5.38330 5.48696 5.62533 5.74320 5.84233 5.96296 6.36567 6.48156 6.48970 7.25903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.540 6.540 2 C -0.046 4.046 3 Si 0.682 3.318 4 C -0.294 4.294 5 C 0.224 3.776 6 N -0.568 5.568 7 C 0.568 3.432 8 N -0.682 5.682 9 C 0.143 3.857 10 H 0.126 0.874 11 C -0.140 4.140 12 C 0.059 3.941 13 H 0.106 0.894 14 O -0.299 6.299 15 C 0.128 3.872 16 C -0.154 4.154 17 C -0.080 4.080 18 C -0.159 4.159 19 C -0.080 4.080 20 C -0.210 4.210 21 C -0.168 4.168 22 N -0.563 5.563 23 C 0.199 3.801 24 H 0.379 0.621 25 H 0.116 0.884 26 H -0.251 1.251 27 H -0.255 1.255 28 H 0.171 0.829 29 H 0.417 0.583 30 H 0.101 0.899 31 H 0.088 0.912 32 H 0.130 0.870 33 H 0.129 0.871 34 H 0.124 0.876 35 H 0.125 0.875 36 H 0.129 0.871 37 H 0.081 0.919 38 H 0.097 0.903 39 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.482 2.671 -1.596 3.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.346 6.346 2 C -0.159 4.159 3 Si 0.584 3.416 4 C -0.302 4.302 5 C 0.055 3.945 6 N -0.290 5.290 7 C 0.212 3.788 8 N -0.318 5.318 9 C 0.037 3.963 10 H 0.144 0.856 11 C -0.178 4.178 12 C 0.002 3.998 13 H 0.124 0.876 14 O -0.213 6.213 15 C 0.083 3.917 16 C -0.172 4.172 17 C -0.099 4.099 18 C -0.177 4.177 19 C -0.098 4.098 20 C -0.228 4.228 21 C -0.208 4.208 22 N -0.285 5.285 23 C 0.031 3.969 24 H 0.227 0.773 25 H 0.133 0.867 26 H -0.175 1.175 27 H -0.180 1.180 28 H 0.188 0.812 29 H 0.255 0.745 30 H 0.119 0.881 31 H 0.107 0.893 32 H 0.148 0.852 33 H 0.147 0.853 34 H 0.142 0.858 35 H 0.143 0.857 36 H 0.147 0.853 37 H 0.100 0.900 38 H 0.115 0.885 39 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 1.470 2.356 -1.543 3.177 hybrid contribution -0.279 -0.352 0.876 0.984 sum 1.190 2.004 -0.667 2.425 Atomic orbital electron populations 1.86510 1.17118 1.81627 1.49307 1.24706 0.85127 1.09621 0.96411 0.94960 0.80965 0.77787 0.87926 1.21721 1.08015 0.98469 1.01992 1.22847 0.90183 0.90584 0.90839 1.67998 1.16042 1.39283 1.05643 1.19401 0.86830 0.85683 0.86918 1.44081 1.53679 1.14491 1.19510 1.22178 0.91440 0.96128 0.86555 0.85585 1.23637 1.01312 1.00138 0.92740 1.23811 0.98328 0.95936 0.81767 0.87593 1.86158 1.83850 1.39233 1.12046 1.19035 0.95705 0.90752 0.86188 1.20497 1.06196 1.00669 0.89870 1.21029 0.96972 0.94361 0.97489 1.21129 1.03606 0.94803 0.98168 1.20999 0.97049 0.99863 0.91905 1.21281 1.08291 0.93606 0.99640 1.24102 0.98126 1.03378 0.95145 1.67883 1.28225 1.08532 1.23842 1.22791 0.88569 0.98798 0.86738 0.77339 0.86674 1.17509 1.18000 0.81191 0.74506 0.88095 0.89329 0.85212 0.85259 0.85787 0.85687 0.85331 0.90013 0.88457 0.81672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 0.52 12.79 -35.23 -0.45 0.07 16 2 C -0.05 0.07 2.85 36.00 0.10 0.17 16 3 Si 0.68 -1.51 29.87 -169.99 -5.08 -6.59 16 4 C -0.29 0.12 5.40 -104.36 -0.56 -0.45 16 5 C 0.22 0.19 10.92 -17.23 -0.19 0.00 16 6 N -0.57 -1.46 10.46 -13.93 -0.15 -1.60 16 7 C 0.57 1.23 8.43 -322.80 -2.72 -1.49 16 8 N -0.68 -0.12 5.50 -55.00 -0.30 -0.42 16 9 C 0.14 -0.17 4.25 -67.12 -0.29 -0.45 16 10 H 0.13 -0.11 7.36 -51.93 -0.38 -0.49 16 11 C -0.14 0.25 7.66 -25.92 -0.20 0.05 16 12 C 0.06 -0.05 3.68 -25.92 -0.10 -0.15 16 13 H 0.11 -0.21 5.96 -51.93 -0.31 -0.52 16 14 O -0.30 -0.52 10.15 -19.44 -0.20 -0.72 16 15 C 0.13 0.26 6.68 -39.22 -0.26 0.00 16 16 C -0.15 -0.26 9.99 -39.44 -0.39 -0.66 16 17 C -0.08 -0.06 10.04 -39.60 -0.40 -0.46 16 18 C -0.16 -0.10 10.04 -39.56 -0.40 -0.49 16 19 C -0.08 -0.05 10.04 -39.60 -0.40 -0.44 16 20 C -0.21 -0.20 9.01 -39.43 -0.36 -0.55 16 21 C -0.17 0.17 7.71 -25.92 -0.20 -0.03 16 22 N -0.56 -0.96 9.13 -13.93 -0.13 -1.08 16 23 C 0.20 -0.03 9.92 -17.22 -0.17 -0.20 16 24 H 0.38 -1.73 8.70 45.56 0.40 -1.33 16 25 H 0.12 -0.14 7.96 -51.93 -0.41 -0.56 16 26 H -0.25 -0.30 7.11 56.52 0.40 0.10 16 27 H -0.26 0.00 7.11 56.52 0.40 0.40 16 28 H 0.17 -0.14 8.06 -52.49 -0.42 -0.56 16 29 H 0.42 -0.29 8.84 -40.82 -0.36 -0.66 16 30 H 0.10 -0.17 8.12 -51.93 -0.42 -0.59 16 31 H 0.09 -0.22 8.14 -51.93 -0.42 -0.64 16 32 H 0.13 0.09 8.06 -52.48 -0.42 -0.33 16 33 H 0.13 -0.16 8.06 -52.49 -0.42 -0.59 16 34 H 0.12 -0.14 8.06 -52.49 -0.42 -0.57 16 35 H 0.13 -0.17 8.06 -52.49 -0.42 -0.60 16 36 H 0.13 -0.12 5.92 -52.48 -0.31 -0.43 16 37 H 0.08 -0.09 8.14 -51.93 -0.42 -0.51 16 38 H 0.10 0.00 8.14 -51.93 -0.42 -0.42 16 39 H 0.17 -0.44 5.04 -52.49 -0.26 -0.71 16 LS Contribution 331.36 15.07 4.99 4.99 Total: 0.00 -7.03 331.36 -12.48 -19.51 By element: Atomic # 1 Polarization: -4.35 SS G_CDS: -4.65 Total: -9.00 kcal Atomic # 6 Polarization: 1.37 SS G_CDS: -6.52 Total: -5.15 kcal Atomic # 7 Polarization: -2.53 SS G_CDS: -0.58 Total: -3.11 kcal Atomic # 8 Polarization: 0.00 SS G_CDS: -0.65 Total: -0.65 kcal Atomic # 14 Polarization: -1.51 SS G_CDS: -5.08 Total: -6.59 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -7.03 -12.48 -19.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_12060302_12175864.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.600 kcal (2) G-P(sol) polarization free energy of solvation -7.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.508 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds