Wall clock time and date at job start Mon Mar 8 2021 04:54:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86304 * 109.46868 * 2 1 4 4 C 1.50693 * 109.47107 * 240.00053 * 2 1 3 5 5 C 1.38605 * 120.71959 * 299.99988 * 4 2 1 6 6 N 1.32275 * 119.19714 * 179.97438 * 5 4 2 7 7 C 1.32497 * 120.74066 * 359.97438 * 6 5 4 8 8 N 1.38411 * 119.21553 * 180.02562 * 7 6 5 9 9 C 1.46500 * 119.99631 * 179.97438 * 8 7 6 10 10 H 1.09001 * 112.85061 * 23.80967 * 9 8 7 11 11 C 1.53777 * 113.60994 * 155.00185 * 9 8 7 12 12 C 1.53785 * 87.08055 * 139.98201 * 11 9 8 13 13 H 1.09003 * 113.61305 * 89.19894 * 12 11 9 14 14 O 1.42900 * 113.61269 * 220.01882 * 12 11 9 15 15 C 1.35906 * 116.99750 * 203.33019 * 14 12 11 16 16 C 1.38725 * 120.05530 * 174.01941 * 15 14 12 17 17 C 1.38146 * 119.94679 * 179.76877 * 16 15 14 18 18 C 1.38272 * 120.05096 * 0.50857 * 17 16 15 19 19 C 1.38262 * 120.11311 * 359.74256 * 18 17 16 20 20 C 1.38153 * 120.05362 * 0.02562 * 19 18 17 21 21 C 1.53782 * 113.61321 * 252.49884 * 9 8 7 22 22 N 1.32489 * 121.56594 * 0.27893 * 7 6 5 23 23 C 1.32285 * 120.73862 * 359.44184 * 22 7 6 24 24 H 0.96703 * 114.00134 * 59.99744 * 1 2 3 25 25 H 1.09002 * 109.46841 * 119.99645 * 2 1 3 26 26 H 1.48499 * 110.00235 * 59.99940 * 3 2 1 27 27 H 1.48496 * 109.99649 * 181.31894 * 3 2 1 28 28 H 1.07997 * 120.40334 * 359.95259 * 5 4 2 29 29 H 0.97002 * 119.99907 * 0.02562 * 8 7 6 30 30 H 1.08997 * 113.61994 * 25.43150 * 11 9 8 31 31 H 1.09003 * 113.61682 * 254.52879 * 11 9 8 32 32 H 1.08004 * 120.03123 * 0.02562 * 16 15 14 33 33 H 1.07995 * 119.97694 * 180.25320 * 17 16 15 34 34 H 1.08001 * 119.94219 * 179.77221 * 18 17 16 35 35 H 1.07998 * 119.97318 * 179.97438 * 19 18 17 36 36 H 1.08003 * 120.02418 * 180.02562 * 20 19 18 37 37 H 1.08998 * 113.61419 * 105.47739 * 21 9 8 38 38 H 1.08998 * 113.61576 * 334.56571 * 21 9 8 39 39 H 1.07999 * 120.39929 * 180.30214 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 -1.2304 5 6 1.6056 -2.0371 -1.4646 6 7 2.0625 -2.6310 -2.5546 7 6 2.8224 -1.9719 -3.4170 8 7 3.2829 -2.6241 -4.5477 9 6 4.1237 -1.9116 -5.5128 10 1 4.6495 -1.0647 -5.0720 11 6 5.0313 -2.8371 -6.3402 12 6 4.7090 -1.9425 -7.5488 13 1 5.3954 -1.1039 -7.6667 14 8 4.5082 -2.6701 -8.7622 15 6 4.7035 -1.9954 -9.9257 16 6 4.6481 -2.6689 -11.1372 17 6 4.8422 -1.9800 -12.3188 18 6 5.1020 -0.6222 -12.2939 19 6 5.1630 0.0505 -11.0875 20 6 4.9648 -0.6331 -9.9034 21 6 3.4015 -1.5742 -6.8279 22 7 3.1560 -0.7049 -3.2203 23 6 2.7278 -0.0508 -2.1532 24 1 -0.3933 0.4417 -0.7650 25 1 1.7923 -0.5138 0.8900 26 1 1.5614 2.4680 1.2085 27 1 3.5345 1.7703 -0.0321 28 1 0.9866 -2.5795 -0.7653 29 1 3.0482 -3.5527 -4.7013 30 1 4.6487 -3.8533 -6.4349 31 1 6.0785 -2.8044 -6.0397 32 1 4.4491 -3.7303 -11.1569 33 1 4.7950 -2.5031 -13.2624 34 1 5.2572 -0.0860 -13.2185 35 1 5.3666 1.1110 -11.0707 36 1 5.0122 -0.1071 -8.9613 37 1 3.1331 -0.5219 -6.9210 38 1 2.5733 -2.2451 -7.0559 39 1 2.9991 0.9834 -2.0008 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_12060302_12175864.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:54:13 Heat of formation + Delta-G solvation = 60.508395 kcal Electronic energy + Delta-G solvation = -22852.204809 eV Core-core repulsion = 19342.643595 eV Total energy + Delta-G solvation = -3509.561214 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 300.126 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.17288 -41.44701 -39.77633 -38.13676 -37.56685 -35.25651 -34.73518 -32.14870 -31.85866 -30.67171 -27.13155 -26.85193 -26.01183 -25.31451 -23.61135 -23.31425 -22.59927 -20.94838 -19.61121 -19.33602 -18.65233 -18.00274 -17.24424 -16.79119 -16.61582 -16.55077 -16.09544 -16.03915 -15.82171 -15.51642 -15.46798 -15.11795 -14.60466 -14.35596 -14.11611 -14.03841 -13.68952 -13.57385 -13.16519 -12.89701 -12.58588 -12.33220 -12.29621 -12.21938 -11.93073 -11.78813 -11.64025 -11.46980 -11.21982 -10.55788 -10.05741 -9.96405 -9.20020 -9.10786 -4.98531 0.02363 0.11121 0.38042 0.47461 1.32654 1.64121 1.69323 1.99592 2.31291 2.74703 2.82886 3.13796 3.33436 3.39175 3.53539 3.64768 3.69729 3.71544 3.72311 3.79140 3.91386 3.99848 4.20077 4.24988 4.32454 4.49030 4.52624 4.56483 4.57520 4.63696 4.73111 4.74861 4.83572 4.88627 5.00047 5.07973 5.28570 5.37071 5.47974 5.60723 5.74050 5.85920 5.98521 6.35535 6.47097 6.78356 7.22729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.555 6.555 2 C -0.049 4.049 3 Si 0.770 3.230 4 C -0.286 4.286 5 C 0.212 3.788 6 N -0.591 5.591 7 C 0.553 3.447 8 N -0.680 5.680 9 C 0.148 3.852 10 H 0.127 0.873 11 C -0.133 4.133 12 C 0.056 3.944 13 H 0.119 0.881 14 O -0.315 6.315 15 C 0.111 3.889 16 C -0.174 4.174 17 C -0.088 4.088 18 C -0.168 4.168 19 C -0.088 4.088 20 C -0.217 4.217 21 C -0.164 4.164 22 N -0.574 5.574 23 C 0.194 3.806 24 H 0.395 0.605 25 H 0.113 0.887 26 H -0.297 1.297 27 H -0.280 1.280 28 H 0.181 0.819 29 H 0.418 0.582 30 H 0.098 0.902 31 H 0.098 0.902 32 H 0.131 0.869 33 H 0.146 0.854 34 H 0.141 0.859 35 H 0.144 0.856 36 H 0.144 0.856 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.745 3.600 -1.793 4.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.362 6.362 2 C -0.160 4.160 3 Si 0.676 3.324 4 C -0.294 4.294 5 C 0.045 3.955 6 N -0.313 5.313 7 C 0.196 3.804 8 N -0.316 5.316 9 C 0.043 3.957 10 H 0.145 0.855 11 C -0.171 4.171 12 C -0.001 4.001 13 H 0.137 0.863 14 O -0.229 6.229 15 C 0.066 3.934 16 C -0.192 4.192 17 C -0.106 4.106 18 C -0.186 4.186 19 C -0.106 4.106 20 C -0.235 4.235 21 C -0.203 4.203 22 N -0.297 5.297 23 C 0.027 3.973 24 H 0.245 0.755 25 H 0.131 0.869 26 H -0.225 1.225 27 H -0.207 1.207 28 H 0.198 0.802 29 H 0.257 0.743 30 H 0.117 0.883 31 H 0.117 0.883 32 H 0.149 0.851 33 H 0.164 0.836 34 H 0.159 0.841 35 H 0.162 0.838 36 H 0.162 0.838 37 H 0.102 0.898 38 H 0.104 0.896 39 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 1.718 3.270 -1.765 4.093 hybrid contribution -0.391 -0.624 0.982 1.228 sum 1.326 2.645 -0.783 3.061 Atomic orbital electron populations 1.86479 1.17218 1.82071 1.50473 1.24830 0.85139 1.10249 0.95789 0.93925 0.77937 0.75056 0.85528 1.21782 1.07513 0.97992 1.02127 1.23130 0.90354 0.91339 0.90722 1.68001 1.16868 1.40040 1.06436 1.19643 0.87216 0.86114 0.87411 1.44166 1.53578 1.14616 1.19248 1.22160 0.91279 0.96190 0.86119 0.85549 1.23602 1.01749 0.99787 0.91992 1.23973 0.98557 0.96434 0.81112 0.86344 1.86134 1.84061 1.40072 1.12635 1.19262 0.96355 0.91434 0.86373 1.20710 1.07009 1.01060 0.90438 1.21297 0.96599 0.94768 0.97889 1.21434 1.03261 0.94907 0.99030 1.21323 0.96560 1.00926 0.91774 1.21509 1.08059 0.93327 1.00619 1.24029 0.97803 1.03194 0.95267 1.67929 1.28711 1.08432 1.24618 1.23212 0.88121 0.99718 0.86228 0.75537 0.86937 1.22476 1.20721 0.80186 0.74314 0.88312 0.88302 0.85113 0.83627 0.84121 0.83779 0.83847 0.89762 0.89647 0.79395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 1.38 12.79 -148.98 -1.90 -0.52 16 2 C -0.05 0.16 2.85 71.23 0.20 0.37 16 3 Si 0.77 -3.81 29.87 68.60 2.05 -1.76 16 4 C -0.29 0.30 5.40 -19.69 -0.11 0.19 16 5 C 0.21 0.43 10.92 84.71 0.93 1.35 16 6 N -0.59 -3.44 10.46 -197.98 -2.07 -5.51 16 7 C 0.55 2.67 8.43 261.48 2.20 4.87 16 8 N -0.68 -0.69 5.50 -327.93 -1.80 -2.49 16 9 C 0.15 -0.31 4.25 45.52 0.19 -0.12 16 10 H 0.13 -0.24 7.36 -2.39 -0.02 -0.25 16 11 C -0.13 0.45 7.66 31.12 0.24 0.69 16 12 C 0.06 -0.08 3.68 31.12 0.11 0.03 16 13 H 0.12 -0.52 5.96 -2.39 -0.01 -0.53 16 14 O -0.32 -1.38 10.15 -92.49 -0.94 -2.31 16 15 C 0.11 0.53 6.68 22.50 0.15 0.68 16 16 C -0.17 -0.76 9.99 22.36 0.22 -0.54 16 17 C -0.09 -0.15 10.04 22.26 0.22 0.07 16 18 C -0.17 -0.14 10.04 22.28 0.22 0.09 16 19 C -0.09 -0.06 10.04 22.26 0.22 0.17 16 20 C -0.22 -0.40 9.01 22.37 0.20 -0.20 16 21 C -0.16 0.24 7.71 31.12 0.24 0.48 16 22 N -0.57 -1.94 9.13 -197.98 -1.81 -3.74 16 23 C 0.19 -0.15 9.92 84.71 0.84 0.70 16 24 H 0.39 -3.93 8.70 -74.06 -0.64 -4.58 16 25 H 0.11 -0.31 7.96 -2.39 -0.02 -0.33 16 26 H -0.30 -0.89 7.11 99.48 0.71 -0.18 16 27 H -0.28 0.17 7.11 99.48 0.71 0.88 16 28 H 0.18 -0.23 8.06 -2.91 -0.02 -0.25 16 29 H 0.42 -0.17 8.84 -92.71 -0.82 -0.99 16 30 H 0.10 -0.28 8.12 -2.39 -0.02 -0.29 16 31 H 0.10 -0.52 8.14 -2.39 -0.02 -0.54 16 32 H 0.13 0.38 8.06 -2.91 -0.02 0.35 16 33 H 0.15 -0.39 8.06 -2.91 -0.02 -0.41 16 34 H 0.14 -0.46 8.06 -2.91 -0.02 -0.48 16 35 H 0.14 -0.57 8.06 -2.91 -0.02 -0.59 16 36 H 0.14 -0.33 5.92 -2.91 -0.02 -0.35 16 37 H 0.08 -0.17 8.14 -2.39 -0.02 -0.19 16 38 H 0.08 0.10 8.14 -2.39 -0.02 0.08 16 39 H 0.19 -1.23 5.04 -2.91 -0.01 -1.25 16 Total: 0.00 -16.70 331.36 -0.71 -17.40 By element: Atomic # 1 Polarization: -9.57 SS G_CDS: -0.33 Total: -9.90 kcal Atomic # 6 Polarization: 2.74 SS G_CDS: 6.10 Total: 8.84 kcal Atomic # 7 Polarization: -6.06 SS G_CDS: -5.68 Total: -11.75 kcal Atomic # 8 Polarization: 0.01 SS G_CDS: -2.84 Total: -2.84 kcal Atomic # 14 Polarization: -3.81 SS G_CDS: 2.05 Total: -1.76 kcal Total: -16.70 -0.71 -17.40 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_12060302_12175864.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.912 kcal (2) G-P(sol) polarization free energy of solvation -16.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.403 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds