Wall clock time and date at job start Mon Mar 8 2021 04:54:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42894 * 1 3 3 Si 1.86293 * 109.47369 * 2 1 4 4 C 1.50710 * 109.47054 * 239.99855 * 2 1 3 5 5 C 1.38020 * 120.33286 * 119.72131 * 4 2 1 6 6 N 1.31967 * 120.85678 * 179.73377 * 5 4 2 7 7 C 1.32404 * 121.61939 * 0.58165 * 6 5 4 8 8 N 1.39005 * 119.70345 * 179.71026 * 7 6 5 9 9 C 1.46497 * 119.99601 * 179.97438 * 8 7 6 10 10 H 1.09006 * 112.84942 * 336.18772 * 9 8 7 11 11 C 1.53780 * 113.61896 * 107.50124 * 9 8 7 12 12 C 1.53774 * 87.08429 * 139.97792 * 11 9 8 13 13 H 1.08999 * 113.61698 * 89.11272 * 12 11 9 14 14 O 1.42904 * 113.69154 * 220.00705 * 12 11 9 15 15 C 1.35897 * 117.00320 * 254.20443 * 14 12 11 16 16 C 1.38729 * 120.05621 * 185.43090 * 15 14 12 17 17 C 1.38149 * 119.93766 * 179.70247 * 16 15 14 18 18 C 1.38257 * 120.06144 * 0.59330 * 17 16 15 19 19 C 1.38275 * 120.10933 * 359.68174 * 18 17 16 20 20 C 1.38141 * 120.05516 * 0.02562 * 19 18 17 21 21 C 1.53784 * 87.08272 * 334.56790 * 12 11 9 22 22 C 1.39132 * 120.58708 * 359.68297 * 7 6 5 23 23 C 1.38298 * 119.09797 * 0.02562 * 22 7 6 24 24 H 0.96697 * 114.00138 * 59.99578 * 1 2 3 25 25 H 1.08999 * 109.47080 * 120.00419 * 2 1 3 26 26 H 1.48502 * 109.99742 * 60.00169 * 3 2 1 27 27 H 1.48499 * 110.00263 * 181.32010 * 3 2 1 28 28 H 1.08001 * 119.57398 * 0.02654 * 5 4 2 29 29 H 0.96993 * 120.00057 * 359.97108 * 8 7 6 30 30 H 1.08996 * 113.61135 * 254.52966 * 11 9 8 31 31 H 1.09005 * 113.61194 * 25.42675 * 11 9 8 32 32 H 1.08001 * 120.02968 * 359.97438 * 16 15 14 33 33 H 1.07999 * 119.96456 * 180.27532 * 17 16 15 34 34 H 1.08001 * 119.95086 * 179.69824 * 18 17 16 35 35 H 1.07998 * 119.97084 * 179.97438 * 19 18 17 36 36 H 1.08000 * 120.03016 * 180.02562 * 20 19 18 37 37 H 1.08997 * 113.61304 * 270.88728 * 21 12 11 38 38 H 1.09001 * 113.61547 * 139.97856 * 21 12 11 39 39 H 1.08004 * 120.45213 * 180.02562 * 22 7 6 40 40 H 1.08008 * 120.74559 * 179.97438 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7105 -1.2305 5 6 2.7205 -0.0447 -2.1465 6 7 3.1703 -0.6582 -3.2248 7 6 2.8762 -1.9244 -3.4766 8 7 3.3666 -2.5296 -4.6279 9 6 3.0456 -3.9304 -4.9125 10 1 2.7935 -4.4974 -4.0163 11 6 2.0394 -4.1107 -6.0613 12 6 2.8913 -5.3080 -6.5148 13 1 2.5959 -6.2522 -6.0574 14 8 3.0417 -5.4013 -7.9328 15 6 2.3324 -6.3723 -8.5660 16 6 2.5155 -6.5935 -9.9232 17 6 1.7977 -7.5853 -10.5632 18 6 0.8885 -8.3489 -9.8548 19 6 0.7001 -8.1266 -8.5031 20 6 1.4198 -7.1401 -7.8573 21 6 4.0788 -4.6284 -5.8127 22 6 2.0811 -2.6546 -2.5989 23 6 1.6000 -2.0399 -1.4572 24 1 -0.3933 0.4417 -0.7650 25 1 1.7923 -0.5139 0.8899 26 1 1.5615 2.4677 1.2085 27 1 3.5346 1.7702 -0.0321 28 1 2.9771 0.9904 -1.9761 29 1 3.9212 -2.0245 -5.2427 30 1 1.0398 -4.3879 -5.7267 31 1 2.0350 -3.2840 -6.7717 32 1 3.2218 -5.9937 -10.4782 33 1 1.9431 -7.7608 -11.6188 34 1 0.3247 -9.1206 -10.3579 35 1 -0.0110 -8.7242 -7.9521 36 1 1.2726 -6.9671 -6.8014 37 1 4.6318 -3.9432 -6.4551 38 1 4.7255 -5.3235 -5.2774 39 1 1.8429 -3.6875 -2.8062 40 1 0.9802 -2.5816 -0.7579 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_12060302_13915762.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:54:17 Heat of formation + Delta-G solvation = 39.688109 kcal Electronic energy + Delta-G solvation = -22696.703213 eV Core-core repulsion = 19251.665075 eV Total energy + Delta-G solvation = -3445.038138 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 299.131 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.78096 -41.21843 -39.80935 -38.09677 -37.52057 -35.10780 -33.36587 -31.97370 -31.28363 -30.65126 -27.06824 -26.90869 -25.48645 -24.81292 -23.60393 -23.13580 -22.23022 -20.94851 -19.58093 -18.79717 -18.45744 -17.72023 -16.98837 -16.85136 -16.63402 -16.48167 -16.27281 -15.97105 -15.58347 -15.51040 -15.16391 -14.95710 -14.39547 -14.32693 -14.09996 -14.04378 -13.74842 -13.66002 -13.36286 -12.91219 -12.70329 -12.46257 -12.43076 -12.25734 -11.98564 -11.71069 -11.52543 -11.17775 -10.75855 -10.40713 -10.39728 -9.96869 -9.16695 -8.74579 -5.03587 0.21755 0.37369 0.40425 0.48459 1.30658 1.62672 1.82667 1.98016 2.34780 2.79671 2.83341 3.16815 3.24309 3.43759 3.49184 3.53762 3.60641 3.76068 3.82830 3.90273 3.94741 4.01073 4.09742 4.23182 4.29769 4.39888 4.43569 4.48243 4.50181 4.52358 4.63726 4.69276 4.70892 4.73025 4.91009 4.99704 5.04395 5.28692 5.34441 5.45613 5.48736 5.59738 5.80978 5.94160 6.43496 6.48135 6.58266 7.12765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.543 6.543 2 C -0.052 4.052 3 Si 0.682 3.318 4 C -0.235 4.235 5 C 0.156 3.844 6 N -0.539 5.539 7 C 0.408 3.592 8 N -0.709 5.709 9 C 0.135 3.865 10 H 0.116 0.884 11 C -0.170 4.170 12 C 0.058 3.942 13 H 0.106 0.894 14 O -0.299 6.299 15 C 0.128 3.872 16 C -0.153 4.153 17 C -0.080 4.080 18 C -0.158 4.158 19 C -0.080 4.080 20 C -0.210 4.210 21 C -0.137 4.137 22 C -0.240 4.240 23 C -0.005 4.005 24 H 0.379 0.621 25 H 0.112 0.888 26 H -0.253 1.253 27 H -0.256 1.256 28 H 0.155 0.845 29 H 0.408 0.592 30 H 0.080 0.920 31 H 0.100 0.900 32 H 0.130 0.870 33 H 0.130 0.870 34 H 0.124 0.876 35 H 0.125 0.875 36 H 0.128 0.872 37 H 0.102 0.898 38 H 0.088 0.912 39 H 0.133 0.867 40 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.232 -1.763 -1.420 2.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.348 6.348 2 C -0.164 4.164 3 Si 0.584 3.416 4 C -0.240 4.240 5 C -0.001 4.001 6 N -0.255 5.255 7 C 0.173 3.827 8 N -0.340 5.340 9 C 0.028 3.972 10 H 0.134 0.866 11 C -0.210 4.210 12 C 0.000 4.000 13 H 0.123 0.877 14 O -0.212 6.212 15 C 0.083 3.917 16 C -0.172 4.172 17 C -0.098 4.098 18 C -0.177 4.177 19 C -0.098 4.098 20 C -0.229 4.229 21 C -0.176 4.176 22 C -0.264 4.264 23 C -0.031 4.031 24 H 0.226 0.774 25 H 0.129 0.871 26 H -0.178 1.178 27 H -0.181 1.181 28 H 0.172 0.828 29 H 0.245 0.755 30 H 0.099 0.901 31 H 0.118 0.882 32 H 0.148 0.852 33 H 0.148 0.852 34 H 0.142 0.858 35 H 0.143 0.857 36 H 0.146 0.854 37 H 0.120 0.880 38 H 0.107 0.893 39 H 0.151 0.849 40 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -0.042 -1.065 -1.118 1.545 hybrid contribution -0.332 -1.032 0.603 1.241 sum -0.375 -2.097 -0.515 2.192 Atomic orbital electron populations 1.86487 1.17332 1.81666 1.49294 1.24783 0.85016 1.09679 0.96943 0.94842 0.81105 0.78139 0.87519 1.21005 1.05941 0.96687 1.00403 1.22223 0.91437 0.98557 0.87895 1.67146 1.27031 1.09107 1.22249 1.18407 0.89144 0.88526 0.86647 1.44394 1.56005 1.11072 1.22561 1.22169 0.96140 0.81897 0.97008 0.86646 1.24148 0.99284 0.99003 0.98525 1.23821 0.98161 0.98614 0.79360 0.87678 1.86161 1.64010 1.50179 1.20859 1.19037 0.91628 0.88646 0.92406 1.20500 1.03564 1.01134 0.91987 1.21032 0.94739 0.94038 0.99995 1.21132 1.00455 1.01481 0.94597 1.20998 0.97842 0.96275 0.94706 1.21262 1.00686 1.00318 1.00589 1.23601 0.96802 0.99876 0.97274 1.21469 1.05679 1.01693 0.97580 1.21189 0.93770 0.93227 0.94887 0.77415 0.87058 1.17795 1.18086 0.82814 0.75491 0.90119 0.88151 0.85179 0.85226 0.85760 0.85694 0.85414 0.87960 0.89329 0.84907 0.84597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -0.05 12.78 -35.23 -0.45 -0.50 16 2 C -0.05 0.01 2.84 36.01 0.10 0.12 16 3 Si 0.68 -0.68 29.82 -169.99 -5.07 -5.75 16 4 C -0.24 -0.10 5.40 -104.46 -0.56 -0.66 16 5 C 0.16 0.17 9.84 -17.57 -0.17 -0.01 16 6 N -0.54 -1.39 10.39 -12.44 -0.13 -1.52 16 7 C 0.41 0.55 7.65 -155.02 -1.19 -0.64 16 8 N -0.71 0.41 5.53 -53.14 -0.29 0.12 16 9 C 0.13 -0.33 4.03 -67.12 -0.27 -0.60 16 10 H 0.12 -0.41 6.10 -51.93 -0.32 -0.73 16 11 C -0.17 0.32 7.71 -25.92 -0.20 0.12 16 12 C 0.06 -0.09 3.68 -25.92 -0.10 -0.18 16 13 H 0.11 -0.29 5.96 -51.93 -0.31 -0.60 16 14 O -0.30 -0.41 10.15 -19.42 -0.20 -0.61 16 15 C 0.13 0.22 6.68 -39.22 -0.26 -0.04 16 16 C -0.15 -0.23 9.99 -39.43 -0.39 -0.62 16 17 C -0.08 -0.04 10.04 -39.61 -0.40 -0.44 16 18 C -0.16 -0.06 10.04 -39.56 -0.40 -0.46 16 19 C -0.08 -0.02 10.04 -39.60 -0.40 -0.42 16 20 C -0.21 -0.12 9.02 -39.43 -0.36 -0.48 16 21 C -0.14 0.34 7.66 -25.91 -0.20 0.14 16 22 C -0.24 -0.05 9.29 -39.23 -0.36 -0.42 16 23 C 0.00 0.00 9.76 -39.32 -0.38 -0.39 16 24 H 0.38 -1.35 8.70 45.56 0.40 -0.95 16 25 H 0.11 0.01 7.96 -51.93 -0.41 -0.41 16 26 H -0.25 -0.56 7.11 56.52 0.40 -0.16 16 27 H -0.26 -0.35 7.11 56.52 0.40 0.05 16 28 H 0.16 -0.14 4.88 -52.49 -0.26 -0.39 16 29 H 0.41 -0.32 8.85 -40.82 -0.36 -0.68 16 30 H 0.08 -0.19 8.14 -51.93 -0.42 -0.61 16 31 H 0.10 -0.06 8.14 -51.93 -0.42 -0.48 16 32 H 0.13 0.06 8.06 -52.49 -0.42 -0.36 16 33 H 0.13 -0.19 8.06 -52.49 -0.42 -0.61 16 34 H 0.12 -0.17 8.06 -52.49 -0.42 -0.59 16 35 H 0.13 -0.20 8.06 -52.49 -0.42 -0.63 16 36 H 0.13 -0.18 5.92 -52.49 -0.31 -0.49 16 37 H 0.10 -0.20 8.12 -51.93 -0.42 -0.62 16 38 H 0.09 -0.28 8.14 -51.93 -0.42 -0.70 16 39 H 0.13 -0.25 6.04 -52.48 -0.32 -0.56 16 40 H 0.14 -0.10 8.06 -52.48 -0.42 -0.53 16 LS Contribution 333.78 15.07 5.03 5.03 Total: 0.00 -6.72 333.78 -11.54 -18.26 By element: Atomic # 1 Polarization: -5.17 SS G_CDS: -4.89 Total: -10.06 kcal Atomic # 6 Polarization: 0.56 SS G_CDS: -5.54 Total: -4.97 kcal Atomic # 7 Polarization: -0.98 SS G_CDS: -0.42 Total: -1.40 kcal Atomic # 8 Polarization: -0.45 SS G_CDS: -0.65 Total: -1.10 kcal Atomic # 14 Polarization: -0.68 SS G_CDS: -5.07 Total: -5.75 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -6.72 -11.54 -18.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_12060302_13915762.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.947 kcal (2) G-P(sol) polarization free energy of solvation -6.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.259 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds