Wall clock time and date at job start Mon Mar 8 2021 04:54:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42894 * 1 3 3 Si 1.86293 * 109.47369 * 2 1 4 4 C 1.50710 * 109.47054 * 239.99855 * 2 1 3 5 5 C 1.38020 * 120.33286 * 119.72131 * 4 2 1 6 6 N 1.31967 * 120.85678 * 179.73377 * 5 4 2 7 7 C 1.32404 * 121.61939 * 0.58165 * 6 5 4 8 8 N 1.39005 * 119.70345 * 179.71026 * 7 6 5 9 9 C 1.46497 * 119.99601 * 179.97438 * 8 7 6 10 10 H 1.09006 * 112.84942 * 336.18772 * 9 8 7 11 11 C 1.53780 * 113.61896 * 107.50124 * 9 8 7 12 12 C 1.53774 * 87.08429 * 139.97792 * 11 9 8 13 13 H 1.08999 * 113.61698 * 89.11272 * 12 11 9 14 14 O 1.42904 * 113.69154 * 220.00705 * 12 11 9 15 15 C 1.35897 * 117.00320 * 254.20443 * 14 12 11 16 16 C 1.38729 * 120.05621 * 185.43090 * 15 14 12 17 17 C 1.38149 * 119.93766 * 179.70247 * 16 15 14 18 18 C 1.38257 * 120.06144 * 0.59330 * 17 16 15 19 19 C 1.38275 * 120.10933 * 359.68174 * 18 17 16 20 20 C 1.38141 * 120.05516 * 0.02562 * 19 18 17 21 21 C 1.53784 * 87.08272 * 334.56790 * 12 11 9 22 22 C 1.39132 * 120.58708 * 359.68297 * 7 6 5 23 23 C 1.38298 * 119.09797 * 0.02562 * 22 7 6 24 24 H 0.96697 * 114.00138 * 59.99578 * 1 2 3 25 25 H 1.08999 * 109.47080 * 120.00419 * 2 1 3 26 26 H 1.48502 * 109.99742 * 60.00169 * 3 2 1 27 27 H 1.48499 * 110.00263 * 181.32010 * 3 2 1 28 28 H 1.08001 * 119.57398 * 0.02654 * 5 4 2 29 29 H 0.96993 * 120.00057 * 359.97108 * 8 7 6 30 30 H 1.08996 * 113.61135 * 254.52966 * 11 9 8 31 31 H 1.09005 * 113.61194 * 25.42675 * 11 9 8 32 32 H 1.08001 * 120.02968 * 359.97438 * 16 15 14 33 33 H 1.07999 * 119.96456 * 180.27532 * 17 16 15 34 34 H 1.08001 * 119.95086 * 179.69824 * 18 17 16 35 35 H 1.07998 * 119.97084 * 179.97438 * 19 18 17 36 36 H 1.08000 * 120.03016 * 180.02562 * 20 19 18 37 37 H 1.08997 * 113.61304 * 270.88728 * 21 12 11 38 38 H 1.09001 * 113.61547 * 139.97856 * 21 12 11 39 39 H 1.08004 * 120.45213 * 180.02562 * 22 7 6 40 40 H 1.08008 * 120.74559 * 179.97438 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7105 -1.2305 5 6 2.7205 -0.0447 -2.1465 6 7 3.1703 -0.6582 -3.2248 7 6 2.8762 -1.9244 -3.4766 8 7 3.3666 -2.5296 -4.6279 9 6 3.0456 -3.9304 -4.9125 10 1 2.7935 -4.4974 -4.0163 11 6 2.0394 -4.1107 -6.0613 12 6 2.8913 -5.3080 -6.5148 13 1 2.5959 -6.2522 -6.0574 14 8 3.0417 -5.4013 -7.9328 15 6 2.3324 -6.3723 -8.5660 16 6 2.5155 -6.5935 -9.9232 17 6 1.7977 -7.5853 -10.5632 18 6 0.8885 -8.3489 -9.8548 19 6 0.7001 -8.1266 -8.5031 20 6 1.4198 -7.1401 -7.8573 21 6 4.0788 -4.6284 -5.8127 22 6 2.0811 -2.6546 -2.5989 23 6 1.6000 -2.0399 -1.4572 24 1 -0.3933 0.4417 -0.7650 25 1 1.7923 -0.5139 0.8899 26 1 1.5615 2.4677 1.2085 27 1 3.5346 1.7702 -0.0321 28 1 2.9771 0.9904 -1.9761 29 1 3.9212 -2.0245 -5.2427 30 1 1.0398 -4.3879 -5.7267 31 1 2.0350 -3.2840 -6.7717 32 1 3.2218 -5.9937 -10.4782 33 1 1.9431 -7.7608 -11.6188 34 1 0.3247 -9.1206 -10.3579 35 1 -0.0110 -8.7242 -7.9521 36 1 1.2726 -6.9671 -6.8014 37 1 4.6318 -3.9432 -6.4551 38 1 4.7255 -5.3235 -5.2774 39 1 1.8429 -3.6875 -2.8062 40 1 0.9802 -2.5816 -0.7579 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_12060302_13915762.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:54:16 Heat of formation + Delta-G solvation = 43.620293 kcal Electronic energy + Delta-G solvation = -22696.532701 eV Core-core repulsion = 19251.665075 eV Total energy + Delta-G solvation = -3444.867626 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 299.131 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.72354 -41.20799 -39.73658 -38.07206 -37.49040 -35.05740 -33.37515 -31.95708 -31.25765 -30.63761 -26.94312 -26.82275 -25.42244 -24.80464 -23.58783 -23.12186 -22.19844 -20.81625 -19.53996 -18.75122 -18.43515 -17.66935 -16.96855 -16.77916 -16.57595 -16.45610 -16.23294 -15.94407 -15.52664 -15.47663 -15.14171 -14.93062 -14.38038 -14.35200 -14.08333 -14.01777 -13.65005 -13.56575 -13.34873 -12.84627 -12.61105 -12.41833 -12.32425 -12.19879 -12.08238 -11.63005 -11.42471 -11.10423 -10.77203 -10.43155 -10.38486 -9.97050 -9.17532 -8.71371 -4.99258 0.21165 0.37439 0.39421 0.46941 1.34165 1.63147 1.90312 1.96852 2.41534 2.79771 2.82755 3.33316 3.38829 3.53131 3.60197 3.69681 3.71802 3.78239 3.89825 3.97375 3.99488 4.07970 4.16819 4.30358 4.36453 4.47418 4.50057 4.55350 4.57438 4.65497 4.74157 4.74679 4.83933 4.89066 4.98013 5.04767 5.07806 5.31268 5.35605 5.47233 5.53165 5.60229 5.85387 6.00428 6.46163 6.51078 6.79585 7.12424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.556 6.556 2 C -0.052 4.052 3 Si 0.763 3.237 4 C -0.236 4.236 5 C 0.145 3.855 6 N -0.566 5.566 7 C 0.394 3.606 8 N -0.708 5.708 9 C 0.140 3.860 10 H 0.133 0.867 11 C -0.167 4.167 12 C 0.053 3.947 13 H 0.121 0.879 14 O -0.316 6.316 15 C 0.111 3.889 16 C -0.174 4.174 17 C -0.088 4.088 18 C -0.169 4.169 19 C -0.088 4.088 20 C -0.216 4.216 21 C -0.134 4.134 22 C -0.240 4.240 23 C -0.012 4.012 24 H 0.394 0.606 25 H 0.108 0.892 26 H -0.296 1.296 27 H -0.288 1.288 28 H 0.166 0.834 29 H 0.407 0.593 30 H 0.088 0.912 31 H 0.083 0.917 32 H 0.130 0.870 33 H 0.145 0.855 34 H 0.140 0.860 35 H 0.144 0.856 36 H 0.146 0.854 37 H 0.094 0.906 38 H 0.099 0.901 39 H 0.154 0.846 40 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.936 -2.772 -1.110 3.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.364 6.364 2 C -0.164 4.164 3 Si 0.670 3.330 4 C -0.241 4.241 5 C -0.012 4.012 6 N -0.284 5.284 7 C 0.159 3.841 8 N -0.339 5.339 9 C 0.034 3.966 10 H 0.150 0.850 11 C -0.206 4.206 12 C -0.004 4.004 13 H 0.138 0.862 14 O -0.230 6.230 15 C 0.066 3.934 16 C -0.193 4.193 17 C -0.106 4.106 18 C -0.187 4.187 19 C -0.106 4.106 20 C -0.234 4.234 21 C -0.172 4.172 22 C -0.265 4.265 23 C -0.037 4.037 24 H 0.244 0.756 25 H 0.126 0.874 26 H -0.224 1.224 27 H -0.215 1.215 28 H 0.183 0.817 29 H 0.243 0.757 30 H 0.107 0.893 31 H 0.102 0.898 32 H 0.148 0.852 33 H 0.163 0.837 34 H 0.158 0.842 35 H 0.162 0.838 36 H 0.164 0.836 37 H 0.112 0.888 38 H 0.118 0.882 39 H 0.172 0.828 40 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -0.761 -2.088 -0.836 2.375 hybrid contribution -0.113 -0.713 0.509 0.883 sum -0.874 -2.801 -0.328 2.953 Atomic orbital electron populations 1.86450 1.17340 1.82080 1.50488 1.24814 0.85075 1.09946 0.96544 0.93858 0.77930 0.76069 0.85163 1.21055 1.05792 0.96938 1.00363 1.22447 0.91678 0.99215 0.87869 1.67137 1.28076 1.10051 1.23127 1.18668 0.89595 0.88498 0.87361 1.44504 1.55679 1.11681 1.22021 1.22266 0.95780 0.81120 0.97416 0.84962 1.24082 0.99869 0.98332 0.98341 1.24037 0.98714 0.99386 0.78248 0.86166 1.86139 1.64245 1.50308 1.22346 1.19259 0.92245 0.89134 0.92739 1.20710 1.04273 1.01890 0.92439 1.21289 0.94605 0.93766 1.00909 1.21432 1.00493 1.01803 0.94965 1.21326 0.98014 0.96307 0.94948 1.21507 1.00304 1.00102 1.01534 1.23582 0.96740 0.99811 0.97062 1.21693 1.05049 1.02584 0.97145 1.21407 0.93840 0.93303 0.95187 0.75615 0.87439 1.22416 1.21467 0.81731 0.75691 0.89302 0.89812 0.85202 0.83707 0.84182 0.83773 0.83645 0.88763 0.88229 0.82849 0.83513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 0.21 12.78 -148.98 -1.90 -1.70 16 2 C -0.05 0.04 2.84 71.24 0.20 0.24 16 3 Si 0.76 -1.21 29.82 68.60 2.05 0.83 16 4 C -0.24 -0.16 5.40 -19.76 -0.11 -0.27 16 5 C 0.14 0.35 9.84 84.62 0.83 1.18 16 6 N -0.57 -3.20 10.39 -193.27 -2.01 -5.21 16 7 C 0.39 1.05 7.65 133.06 1.02 2.07 16 8 N -0.71 0.76 5.53 -322.03 -1.78 -1.02 16 9 C 0.14 -0.77 4.03 45.52 0.18 -0.59 16 10 H 0.13 -1.17 6.10 -2.38 -0.01 -1.18 16 11 C -0.17 0.66 7.71 31.12 0.24 0.90 16 12 C 0.05 -0.17 3.68 31.12 0.11 -0.06 16 13 H 0.12 -0.80 5.96 -2.39 -0.01 -0.82 16 14 O -0.32 -1.11 10.15 -92.39 -0.94 -2.04 16 15 C 0.11 0.45 6.68 22.51 0.15 0.60 16 16 C -0.17 -0.69 9.99 22.37 0.22 -0.47 16 17 C -0.09 -0.13 10.04 22.25 0.22 0.10 16 18 C -0.17 -0.07 10.04 22.28 0.22 0.15 16 19 C -0.09 0.01 10.04 22.26 0.22 0.23 16 20 C -0.22 -0.17 9.02 22.37 0.20 0.03 16 21 C -0.13 0.68 7.66 31.12 0.24 0.92 16 22 C -0.24 0.09 9.29 22.50 0.21 0.30 16 23 C -0.01 0.00 9.76 22.44 0.22 0.22 16 24 H 0.39 -3.10 8.70 -74.06 -0.64 -3.74 16 25 H 0.11 0.01 7.96 -2.39 -0.02 -0.01 16 26 H -0.30 -1.67 7.11 99.48 0.71 -0.96 16 27 H -0.29 -1.03 7.11 99.48 0.71 -0.32 16 28 H 0.17 -0.23 4.88 -2.91 -0.01 -0.24 16 29 H 0.41 -0.33 8.85 -92.71 -0.82 -1.15 16 30 H 0.09 -0.50 8.14 -2.39 -0.02 -0.52 16 31 H 0.08 -0.02 8.14 -2.38 -0.02 -0.04 16 32 H 0.13 0.35 8.06 -2.91 -0.02 0.32 16 33 H 0.15 -0.41 8.06 -2.91 -0.02 -0.43 16 34 H 0.14 -0.49 8.06 -2.91 -0.02 -0.52 16 35 H 0.14 -0.67 8.06 -2.91 -0.02 -0.69 16 36 H 0.15 -0.57 5.92 -2.91 -0.02 -0.59 16 37 H 0.09 -0.31 8.12 -2.39 -0.02 -0.33 16 38 H 0.10 -0.71 8.14 -2.39 -0.02 -0.73 16 39 H 0.15 -0.84 6.04 -2.91 -0.02 -0.85 16 40 H 0.15 -0.38 8.06 -2.91 -0.02 -0.40 16 Total: 0.00 -16.27 333.78 -0.53 -16.81 By element: Atomic # 1 Polarization: -12.88 SS G_CDS: -0.34 Total: -13.22 kcal Atomic # 6 Polarization: 1.16 SS G_CDS: 4.40 Total: 5.55 kcal Atomic # 7 Polarization: -2.44 SS G_CDS: -3.79 Total: -6.23 kcal Atomic # 8 Polarization: -0.90 SS G_CDS: -2.84 Total: -3.74 kcal Atomic # 14 Polarization: -1.21 SS G_CDS: 2.05 Total: 0.83 kcal Total: -16.27 -0.53 -16.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_12060302_13915762.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.426 kcal (2) G-P(sol) polarization free energy of solvation -16.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.805 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds