Wall clock time and date at job start Mon Mar 8 2021 04:54:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86298 * 109.47204 * 2 1 4 4 C 1.50708 * 109.47223 * 240.00302 * 2 1 3 5 5 C 1.33326 * 125.94756 * 300.00016 * 4 2 1 6 6 N 1.32121 * 114.57612 * 179.97438 * 5 4 2 7 7 C 1.29688 * 116.86643 * 0.02562 * 6 5 4 8 8 N 1.38611 * 124.94853 * 179.97438 * 7 6 5 9 9 C 1.46507 * 120.00219 * 0.02562 * 8 7 6 10 10 H 1.08999 * 112.90136 * 23.75454 * 9 8 7 11 11 C 1.53775 * 113.61476 * 155.00014 * 9 8 7 12 12 C 1.53782 * 87.07984 * 139.98316 * 11 9 8 13 13 H 1.09002 * 113.61170 * 89.11699 * 12 11 9 14 14 O 1.42894 * 113.61512 * 220.01722 * 12 11 9 15 15 C 1.35903 * 117.00275 * 202.11648 * 14 12 11 16 16 C 1.38729 * 120.05424 * 173.78437 * 15 14 12 17 17 C 1.38153 * 119.93769 * 179.69809 * 16 15 14 18 18 C 1.38261 * 120.05501 * 0.59524 * 17 16 15 19 19 C 1.38265 * 120.11457 * 359.67998 * 18 17 16 20 20 C 1.38146 * 120.05383 * 0.02562 * 19 18 17 21 21 C 1.53771 * 113.61563 * 252.50262 * 9 8 7 22 22 S 1.70960 * 110.10125 * 0.24042 * 7 6 5 23 23 H 0.96706 * 113.99590 * 60.00015 * 1 2 3 24 24 H 1.08993 * 109.47085 * 120.00545 * 2 1 3 25 25 H 1.48498 * 110.00293 * 298.68488 * 3 2 1 26 26 H 1.48504 * 109.99972 * 60.00256 * 3 2 1 27 27 H 1.07999 * 122.71368 * 359.97438 * 5 4 2 28 28 H 0.97005 * 120.00121 * 180.02562 * 8 7 6 29 29 H 1.09003 * 113.61482 * 254.53313 * 11 9 8 30 30 H 1.08996 * 113.61334 * 25.43592 * 11 9 8 31 31 H 1.07998 * 120.03326 * 359.97438 * 16 15 14 32 32 H 1.08002 * 119.96804 * 180.31389 * 17 16 15 33 33 H 1.08007 * 119.94093 * 179.69666 * 18 17 16 34 34 H 1.08001 * 119.97517 * 180.02562 * 19 18 17 35 35 H 1.07998 * 120.02414 * 179.97438 * 20 19 18 36 36 H 1.09004 * 113.61470 * 334.56252 * 21 9 8 37 37 H 1.09001 * 113.61745 * 105.38265 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7104 -1.2306 5 6 1.6835 -1.9788 -1.5581 6 7 2.2376 -2.3721 -2.6912 7 6 2.9423 -1.4939 -3.3347 8 7 3.5956 -1.7253 -4.5351 9 6 3.5172 -3.0435 -5.1696 10 1 2.6359 -3.6085 -4.8663 11 6 3.7326 -3.0083 -6.6918 12 6 4.5516 -4.2993 -6.5267 13 1 3.9531 -5.2078 -6.5944 14 8 5.7229 -4.3427 -7.3442 15 6 6.2381 -5.5698 -7.6194 16 6 7.2945 -5.6960 -8.5097 17 6 7.8205 -6.9439 -8.7830 18 6 7.2869 -8.0676 -8.1795 19 6 6.2302 -7.9450 -7.2962 20 6 5.7047 -6.6988 -7.0149 21 6 4.8249 -3.8479 -5.0822 22 16 2.9541 -0.0116 -2.4831 23 1 -0.3933 0.4417 -0.7651 24 1 1.7923 -0.5139 0.8899 25 1 1.5879 2.4586 -1.2241 26 1 1.5615 2.4679 1.2086 27 1 1.0786 -2.6320 -0.9467 28 1 4.1047 -1.0144 -4.9552 29 1 2.8158 -3.1431 -7.2658 30 1 4.3232 -2.1567 -7.0296 31 1 7.7083 -4.8191 -8.9853 32 1 8.6462 -7.0422 -9.4722 33 1 7.6963 -9.0428 -8.3983 34 1 5.8154 -8.8243 -6.8258 35 1 4.8791 -6.6037 -6.3252 36 1 5.7142 -3.2259 -4.9800 37 1 4.7904 -4.6598 -4.3557 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_12060302_15704118.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:54:19 Heat of formation + Delta-G solvation = 50.277463 kcal Electronic energy + Delta-G solvation = -21251.812861 eV Core-core repulsion = 17896.386158 eV Total energy + Delta-G solvation = -3355.426703 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 305.087 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.58638 -40.73889 -39.68278 -38.12105 -37.57297 -34.96802 -31.95249 -31.28023 -30.68042 -27.12921 -26.82171 -25.92089 -24.44556 -23.55692 -22.95131 -21.21157 -20.78868 -19.58257 -19.39296 -18.26738 -17.31021 -17.08725 -16.76504 -16.54363 -16.37665 -16.15544 -15.98734 -15.61841 -15.40357 -15.11213 -14.96039 -14.36737 -14.14341 -13.93442 -13.63698 -13.56641 -12.96700 -12.88005 -12.60079 -12.46792 -12.33631 -12.31812 -12.02466 -11.66314 -11.45417 -11.15832 -10.93166 -10.31240 -10.21789 -9.97479 -9.18264 -8.75883 -5.04130 -0.08090 0.00571 0.36924 0.46437 0.65770 1.25041 1.54200 1.88099 1.94305 1.97896 2.39351 2.81765 3.31597 3.37222 3.38462 3.63550 3.70455 3.71669 3.89713 3.91763 3.98484 4.19016 4.30822 4.47683 4.51516 4.57056 4.58462 4.63156 4.69843 4.73727 4.81643 4.87783 4.92133 5.06540 5.18350 5.35108 5.46992 5.59744 5.81064 5.84825 6.11394 6.43637 6.45262 6.97835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.542 6.542 2 C -0.022 4.022 3 Si 0.722 3.278 4 C -0.305 4.305 5 C 0.104 3.896 6 N -0.576 5.576 7 C 0.314 3.686 8 N -0.673 5.673 9 C 0.148 3.852 10 H 0.115 0.885 11 C -0.129 4.129 12 C 0.054 3.946 13 H 0.113 0.887 14 O -0.312 6.312 15 C 0.111 3.889 16 C -0.171 4.171 17 C -0.087 4.087 18 C -0.168 4.168 19 C -0.089 4.089 20 C -0.218 4.218 21 C -0.165 4.165 22 S 0.116 5.884 23 H 0.386 0.614 24 H 0.135 0.865 25 H -0.266 1.266 26 H -0.275 1.275 27 H 0.179 0.821 28 H 0.425 0.575 29 H 0.097 0.903 30 H 0.106 0.894 31 H 0.134 0.866 32 H 0.147 0.853 33 H 0.141 0.859 34 H 0.142 0.858 35 H 0.140 0.860 36 H 0.092 0.908 37 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.328 0.288 -1.719 2.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.350 6.350 2 C -0.134 4.134 3 Si 0.625 3.375 4 C -0.428 4.428 5 C -0.047 4.047 6 N -0.302 5.302 7 C -0.056 4.056 8 N -0.312 5.312 9 C 0.040 3.960 10 H 0.133 0.867 11 C -0.167 4.167 12 C -0.002 4.002 13 H 0.130 0.870 14 O -0.226 6.226 15 C 0.066 3.934 16 C -0.190 4.190 17 C -0.105 4.105 18 C -0.186 4.186 19 C -0.107 4.107 20 C -0.236 4.236 21 C -0.204 4.204 22 S 0.366 5.634 23 H 0.236 0.764 24 H 0.153 0.847 25 H -0.192 1.192 26 H -0.201 1.201 27 H 0.196 0.804 28 H 0.265 0.735 29 H 0.116 0.884 30 H 0.124 0.876 31 H 0.152 0.848 32 H 0.165 0.835 33 H 0.159 0.841 34 H 0.160 0.840 35 H 0.158 0.842 36 H 0.111 0.889 37 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 2.655 1.314 -1.698 3.414 hybrid contribution -1.478 -0.674 -0.019 1.625 sum 1.177 0.640 -1.717 2.178 Atomic orbital electron populations 1.86590 1.18155 1.80247 1.50018 1.24259 0.83022 1.10266 0.95867 0.94410 0.90603 0.73336 0.79180 1.25640 1.13004 0.99115 1.05084 1.21448 0.97693 0.93656 0.91908 1.66466 1.18121 1.34564 1.11099 1.23964 0.94955 0.93887 0.92789 1.44007 1.53903 1.14515 1.18822 1.22105 0.98400 0.83405 0.92076 0.86736 1.23579 1.00500 0.97339 0.95268 1.23951 0.85833 1.00196 0.90261 0.86953 1.86121 1.42941 1.26337 1.67215 1.19250 0.94475 0.84487 0.95147 1.20720 0.98227 0.99335 1.00707 1.21309 0.99214 0.91368 0.98601 1.21428 0.98288 0.99737 0.99154 1.21308 0.95550 0.97299 0.96580 1.21489 1.04303 0.92823 1.05028 1.24051 0.99312 1.00866 0.96197 1.83878 1.50430 1.12651 1.16481 0.76434 0.84747 1.19202 1.20072 0.80401 0.73474 0.88412 0.87571 0.84836 0.83497 0.84144 0.84019 0.84230 0.88921 0.90539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -1.13 12.87 -148.98 -1.92 -3.05 16 2 C -0.02 0.01 2.99 71.24 0.21 0.23 16 3 Si 0.72 -1.02 31.05 68.60 2.13 1.11 16 4 C -0.31 -0.32 5.74 24.58 0.14 -0.18 16 5 C 0.10 0.38 11.22 83.54 0.94 1.32 16 6 N -0.58 -3.17 9.83 -202.03 -1.99 -5.16 16 7 C 0.31 0.59 8.09 179.32 1.45 2.04 16 8 N -0.67 1.65 5.51 -327.91 -1.81 -0.16 16 9 C 0.15 -0.41 4.36 45.51 0.20 -0.21 16 10 H 0.11 -0.06 7.67 -2.39 -0.02 -0.07 16 11 C -0.13 0.61 7.66 31.12 0.24 0.84 16 12 C 0.05 -0.09 3.63 31.12 0.11 0.02 16 13 H 0.11 -0.39 6.04 -2.39 -0.01 -0.40 16 14 O -0.31 -1.14 10.15 -92.46 -0.94 -2.07 16 15 C 0.11 0.51 6.68 22.50 0.15 0.66 16 16 C -0.17 -0.66 9.99 22.37 0.22 -0.44 16 17 C -0.09 -0.13 10.04 22.25 0.22 0.09 16 18 C -0.17 -0.17 10.04 22.28 0.22 0.05 16 19 C -0.09 -0.11 10.04 22.25 0.22 0.11 16 20 C -0.22 -0.53 9.01 22.37 0.20 -0.33 16 21 C -0.16 0.29 7.71 31.12 0.24 0.53 16 22 S 0.12 -0.09 20.57 -56.49 -1.16 -1.25 16 23 H 0.39 -1.18 8.70 -74.05 -0.64 -1.83 16 24 H 0.14 -0.36 7.96 -2.39 -0.02 -0.38 16 25 H -0.27 -0.62 7.11 99.48 0.71 0.09 16 26 H -0.27 -1.32 7.11 99.48 0.71 -0.62 16 27 H 0.18 0.34 8.06 -2.91 -0.02 0.31 16 28 H 0.43 -2.85 8.85 -92.70 -0.82 -3.67 16 29 H 0.10 -0.60 8.14 -2.39 -0.02 -0.62 16 30 H 0.11 -0.59 8.12 -2.39 -0.02 -0.61 16 31 H 0.13 0.26 8.06 -2.91 -0.02 0.23 16 32 H 0.15 -0.45 8.06 -2.91 -0.02 -0.47 16 33 H 0.14 -0.42 8.06 -2.91 -0.02 -0.44 16 34 H 0.14 -0.42 8.06 -2.91 -0.02 -0.44 16 35 H 0.14 -0.14 5.95 -2.91 -0.02 -0.16 16 36 H 0.09 -0.06 8.14 -2.38 -0.02 -0.08 16 37 H 0.08 -0.06 8.14 -2.39 -0.02 -0.08 16 Total: 0.00 -13.87 329.41 -1.22 -15.09 By element: Atomic # 1 Polarization: -8.93 SS G_CDS: -0.31 Total: -9.25 kcal Atomic # 6 Polarization: -0.04 SS G_CDS: 4.78 Total: 4.74 kcal Atomic # 7 Polarization: -1.53 SS G_CDS: -3.79 Total: -5.32 kcal Atomic # 8 Polarization: -2.27 SS G_CDS: -2.86 Total: -5.12 kcal Atomic # 14 Polarization: -1.02 SS G_CDS: 2.13 Total: 1.11 kcal Atomic # 16 Polarization: -0.09 SS G_CDS: -1.16 Total: -1.25 kcal Total: -13.87 -1.22 -15.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_12060302_15704118.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.366 kcal (2) G-P(sol) polarization free energy of solvation -13.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.088 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds