Wall clock time and date at job start Mon Mar 8 2021 04:54:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.33328 * 125.95231 * 2 1 4 4 C 1.50694 * 122.70958 * 359.97438 * 3 2 1 5 5 O 1.42900 * 109.47459 * 124.61411 * 4 3 2 6 6 Si 1.86298 * 109.47131 * 244.61474 * 4 3 2 7 7 N 1.32116 * 114.57555 * 179.97438 * 3 2 1 8 8 C 1.29679 * 116.86905 * 359.97438 * 7 3 2 9 9 N 1.38617 * 124.94932 * 179.97438 * 8 7 3 10 10 C 1.46493 * 120.00259 * 179.97438 * 9 8 7 11 11 H 1.09002 * 112.85089 * 25.33893 * 10 9 8 12 12 C 1.53779 * 113.61653 * 156.53132 * 10 9 8 13 13 C 1.53787 * 87.08178 * 140.06988 * 12 10 9 14 14 H 1.09002 * 113.61228 * 89.20308 * 13 12 10 15 15 O 1.42902 * 113.61147 * 220.01790 * 13 12 10 16 16 C 1.35899 * 116.99956 * 201.85490 * 15 13 12 17 17 C 1.38727 * 120.05548 * 173.92459 * 16 15 13 18 18 C 1.38144 * 119.94476 * 179.70541 * 17 16 15 19 19 C 1.38268 * 120.05447 * 0.59663 * 18 17 16 20 20 C 1.38266 * 120.11143 * 359.68188 * 19 18 17 21 21 C 1.38143 * 120.05396 * 0.02562 * 20 19 18 22 22 C 1.53777 * 87.07755 * 334.56834 * 13 12 10 23 23 S 1.70964 * 110.10249 * 0.24467 * 8 7 3 24 24 H 1.09004 * 109.46677 * 83.97427 * 1 2 3 25 25 H 1.08990 * 109.47126 * 203.97203 * 1 2 3 26 26 H 1.09002 * 109.47277 * 323.97994 * 1 2 3 27 27 H 1.08998 * 109.47584 * 4.61639 * 4 3 2 28 28 H 0.96696 * 114.00408 * 179.97438 * 5 4 3 29 29 H 1.48499 * 110.00301 * 300.00023 * 6 4 3 30 30 H 1.48503 * 109.99969 * 61.32113 * 6 4 3 31 31 H 0.97005 * 119.99797 * 0.02562 * 9 8 7 32 32 H 1.09001 * 113.61590 * 254.61483 * 12 10 9 33 33 H 1.08996 * 113.61460 * 25.51973 * 12 10 9 34 34 H 1.07998 * 120.02997 * 0.02562 * 17 16 15 35 35 H 1.07998 * 119.97725 * 180.32513 * 18 17 16 36 36 H 1.08000 * 119.95031 * 179.70581 * 19 18 17 37 37 H 1.07996 * 119.97831 * 180.02562 * 20 19 18 38 38 H 1.08000 * 120.02972 * 179.97438 * 21 20 19 39 39 H 1.09000 * 113.61728 * 270.88058 * 22 13 12 40 40 H 1.09002 * 113.61529 * 139.98381 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2899 1.0793 0.0000 4 6 1.7415 2.4829 -0.0006 5 8 2.2806 3.2054 1.1082 6 14 2.2175 3.3349 -1.5875 7 7 3.5851 0.8187 0.0005 8 6 3.9314 -0.4310 0.0015 9 7 5.2384 -0.8927 0.0017 10 6 5.5066 -2.3329 0.0034 11 1 4.6914 -2.9157 -0.4255 12 6 6.8897 -2.7027 -0.5577 13 6 6.9776 -3.7508 0.5643 14 1 6.5659 -4.7216 0.2882 15 8 8.2740 -3.8463 1.1580 16 6 8.5734 -5.0045 1.8029 17 6 9.8540 -5.2161 2.2925 18 6 10.1542 -6.3917 2.9529 19 6 9.1829 -7.3622 3.1154 20 6 7.9073 -7.1562 2.6233 21 6 7.6005 -5.9798 1.9674 22 6 6.0000 -2.8681 1.3579 23 16 2.5413 -1.4261 -0.0050 24 1 -0.3633 0.1079 -1.0220 25 1 -0.3633 -0.9389 0.4175 26 1 -0.3634 0.8312 0.6043 27 1 0.6552 2.4488 0.0818 28 1 1.9705 4.1192 1.1705 29 1 3.6963 3.3882 -1.7117 30 1 1.6362 2.6113 -2.7466 31 1 5.9756 -0.2621 0.0014 32 1 6.8539 -3.1354 -1.5575 33 1 7.6255 -1.9036 -0.4674 34 1 10.6143 -4.4603 2.1620 35 1 11.1496 -6.5547 3.3389 36 1 9.4208 -8.2827 3.6278 37 1 7.1502 -7.9155 2.7517 38 1 6.6041 -5.8194 1.5828 39 1 6.4925 -2.1141 1.9721 40 1 5.2459 -3.4342 1.9048 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_12060302_15704122.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:54:23 Heat of formation + Delta-G solvation = 42.278599 kcal Electronic energy + Delta-G solvation = -23279.520487 eV Core-core repulsion = 19768.209308 eV Total energy + Delta-G solvation = -3511.311179 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 319.103 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.67356 -40.92718 -39.90111 -37.94843 -37.34526 -35.31005 -32.84609 -31.94772 -30.72259 -29.10092 -27.12043 -26.29531 -25.53100 -24.24106 -23.59247 -22.96201 -21.37193 -19.95861 -19.71192 -19.05266 -18.28497 -17.55589 -17.31409 -16.85486 -16.60477 -16.38605 -16.03250 -15.86658 -15.49018 -15.32076 -15.10103 -14.41278 -14.34334 -14.19473 -14.14144 -13.97141 -13.77864 -13.63307 -13.49964 -13.02569 -12.86349 -12.79299 -12.49481 -12.42225 -12.07071 -11.77712 -11.74312 -11.55362 -11.13808 -10.53125 -10.35873 -9.97572 -9.96243 -9.18070 -8.66434 -4.96167 -0.02844 0.15391 0.36689 0.47446 0.72013 1.30036 1.70579 1.73372 1.96559 2.23950 2.29020 2.81029 3.06514 3.13854 3.41613 3.45595 3.49703 3.64226 3.78685 3.88953 3.98380 4.02386 4.17758 4.21304 4.31683 4.34368 4.41654 4.44258 4.45721 4.57356 4.59650 4.63904 4.69818 4.80493 4.88445 4.89933 5.03593 5.16995 5.33147 5.44899 5.56314 5.59075 5.79782 6.24293 6.42108 6.68969 6.98949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.252 4.252 3 C 0.116 3.884 4 C -0.034 4.034 5 O -0.537 6.537 6 Si 0.701 3.299 7 N -0.531 5.531 8 C 0.315 3.685 9 N -0.681 5.681 10 C 0.131 3.869 11 H 0.112 0.888 12 C -0.133 4.133 13 C 0.060 3.940 14 H 0.107 0.893 15 O -0.298 6.298 16 C 0.127 3.873 17 C -0.153 4.153 18 C -0.080 4.080 19 C -0.158 4.158 20 C -0.080 4.080 21 C -0.209 4.209 22 C -0.171 4.171 23 S 0.106 5.894 24 H 0.074 0.926 25 H 0.071 0.929 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.382 0.618 29 H -0.248 1.248 30 H -0.263 1.263 31 H 0.415 0.585 32 H 0.092 0.908 33 H 0.105 0.895 34 H 0.130 0.870 35 H 0.130 0.870 36 H 0.125 0.875 37 H 0.125 0.875 38 H 0.128 0.872 39 H 0.103 0.897 40 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.889 -1.061 -0.849 3.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.375 4.375 3 C -0.015 4.015 4 C -0.146 4.146 5 O -0.343 6.343 6 Si 0.601 3.399 7 N -0.255 5.255 8 C -0.057 4.057 9 N -0.321 5.321 10 C 0.024 3.976 11 H 0.130 0.870 12 C -0.171 4.171 13 C 0.003 3.997 14 H 0.125 0.875 15 O -0.211 6.211 16 C 0.082 3.918 17 C -0.171 4.171 18 C -0.098 4.098 19 C -0.176 4.176 20 C -0.098 4.098 21 C -0.228 4.228 22 C -0.210 4.210 23 S 0.355 5.645 24 H 0.092 0.908 25 H 0.089 0.911 26 H 0.099 0.901 27 H 0.097 0.903 28 H 0.229 0.771 29 H -0.172 1.172 30 H -0.188 1.188 31 H 0.254 0.746 32 H 0.110 0.890 33 H 0.123 0.877 34 H 0.148 0.852 35 H 0.148 0.852 36 H 0.143 0.857 37 H 0.143 0.857 38 H 0.146 0.854 39 H 0.122 0.878 40 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -1.777 -2.390 -1.559 3.362 hybrid contribution -0.142 0.337 0.348 0.505 sum -1.919 -2.053 -1.211 3.060 Atomic orbital electron populations 1.20198 0.86589 1.03419 1.02787 1.25096 1.01252 0.93187 1.18012 1.18969 0.86688 0.94659 1.01133 1.24276 0.98973 0.90061 1.01302 1.86548 1.72009 1.28325 1.47372 0.96109 0.82600 0.87101 0.74137 1.66122 1.17434 1.16276 1.25688 1.23380 0.91911 0.91503 0.98874 1.43828 1.01893 1.06233 1.80156 1.22258 0.97734 0.80088 0.97480 0.86977 1.23563 0.95926 0.98963 0.98664 1.23777 0.82585 0.98877 0.94502 0.87507 1.86160 1.33901 1.34122 1.66961 1.19032 0.93916 0.85441 0.93397 1.20501 0.94486 0.99311 1.02826 1.21037 0.99609 0.92574 0.96588 1.21137 0.93604 1.00087 1.02769 1.20998 0.96760 0.96296 0.95761 1.21265 0.99530 0.95819 1.06189 1.24179 0.98975 1.00159 0.97735 1.83802 0.96561 1.10141 1.74008 0.90774 0.91053 0.90095 0.90254 0.77097 1.17230 1.18773 0.74597 0.88991 0.87659 0.85166 0.85197 0.85731 0.85663 0.85431 0.87842 0.89808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 0.02 9.79 36.01 0.35 0.37 16 2 C -0.25 -0.73 6.57 -36.02 -0.24 -0.97 16 3 C 0.12 0.53 4.99 -84.19 -0.42 0.11 16 4 C -0.03 -0.06 2.87 36.00 0.10 0.04 16 5 O -0.54 -1.22 12.86 -35.23 -0.45 -1.67 16 6 Si 0.70 0.70 32.90 -169.99 -5.59 -4.89 16 7 N -0.53 -3.19 10.17 -11.37 -0.12 -3.30 16 8 C 0.32 1.14 8.24 -87.68 -0.72 0.42 16 9 N -0.68 -0.70 5.52 -55.00 -0.30 -1.01 16 10 C 0.13 -0.17 4.20 -67.12 -0.28 -0.46 16 11 H 0.11 -0.24 7.10 -51.93 -0.37 -0.61 16 12 C -0.13 0.26 7.66 -25.92 -0.20 0.06 16 13 C 0.06 -0.06 3.63 -25.92 -0.09 -0.16 16 14 H 0.11 -0.26 6.05 -51.93 -0.31 -0.58 16 15 O -0.30 -0.50 10.15 -19.42 -0.20 -0.70 16 16 C 0.13 0.25 6.68 -39.22 -0.26 -0.01 16 17 C -0.15 -0.26 9.99 -39.44 -0.39 -0.66 16 18 C -0.08 -0.06 10.04 -39.60 -0.40 -0.46 16 19 C -0.16 -0.09 10.04 -39.56 -0.40 -0.49 16 20 C -0.08 -0.04 10.04 -39.61 -0.40 -0.44 16 21 C -0.21 -0.18 9.01 -39.43 -0.36 -0.53 16 22 C -0.17 0.18 7.71 -25.92 -0.20 -0.02 16 23 S 0.11 0.20 21.71 -107.50 -2.33 -2.13 16 24 H 0.07 -0.09 8.14 -51.93 -0.42 -0.51 16 25 H 0.07 -0.07 8.14 -51.93 -0.42 -0.50 16 26 H 0.08 -0.10 7.02 -51.93 -0.36 -0.46 16 27 H 0.08 -0.07 6.20 -51.93 -0.32 -0.40 16 28 H 0.38 -1.30 8.74 45.56 0.40 -0.90 16 29 H -0.25 -1.34 7.11 56.52 0.40 -0.94 16 30 H -0.26 -0.91 7.11 56.52 0.40 -0.51 16 31 H 0.42 0.29 8.84 -40.82 -0.36 -0.07 16 32 H 0.09 -0.27 8.14 -51.93 -0.42 -0.69 16 33 H 0.11 -0.17 8.11 -51.93 -0.42 -0.59 16 34 H 0.13 0.10 8.06 -52.49 -0.42 -0.32 16 35 H 0.13 -0.16 8.06 -52.49 -0.42 -0.59 16 36 H 0.12 -0.14 8.06 -52.49 -0.42 -0.57 16 37 H 0.13 -0.18 8.06 -52.49 -0.42 -0.60 16 38 H 0.13 -0.14 5.95 -52.49 -0.31 -0.45 16 39 H 0.10 0.02 8.14 -51.93 -0.42 -0.40 16 40 H 0.08 -0.13 8.14 -51.93 -0.42 -0.55 16 LS Contribution 349.93 15.07 5.27 5.27 Total: 0.00 -9.18 349.93 -12.69 -21.87 By element: Atomic # 1 Polarization: -5.18 SS G_CDS: -5.07 Total: -10.25 kcal Atomic # 6 Polarization: 0.71 SS G_CDS: -3.90 Total: -3.19 kcal Atomic # 7 Polarization: -3.89 SS G_CDS: -0.42 Total: -4.31 kcal Atomic # 8 Polarization: -1.72 SS G_CDS: -0.65 Total: -2.37 kcal Atomic # 14 Polarization: 0.70 SS G_CDS: -5.59 Total: -4.89 kcal Atomic # 16 Polarization: 0.20 SS G_CDS: -2.33 Total: -2.13 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -9.18 -12.69 -21.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_12060302_15704122.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.153 kcal (2) G-P(sol) polarization free energy of solvation -9.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.875 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds