Wall clock time and date at job start Mon Mar 8 2021 04:54:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.33328 * 125.95231 * 2 1 4 4 C 1.50694 * 122.70958 * 359.97438 * 3 2 1 5 5 O 1.42900 * 109.47459 * 124.61411 * 4 3 2 6 6 Si 1.86298 * 109.47131 * 244.61474 * 4 3 2 7 7 N 1.32116 * 114.57555 * 179.97438 * 3 2 1 8 8 C 1.29679 * 116.86905 * 359.97438 * 7 3 2 9 9 N 1.38617 * 124.94932 * 179.97438 * 8 7 3 10 10 C 1.46493 * 120.00259 * 179.97438 * 9 8 7 11 11 H 1.09002 * 112.85089 * 25.33893 * 10 9 8 12 12 C 1.53779 * 113.61653 * 156.53132 * 10 9 8 13 13 C 1.53787 * 87.08178 * 140.06988 * 12 10 9 14 14 H 1.09002 * 113.61228 * 89.20308 * 13 12 10 15 15 O 1.42902 * 113.61147 * 220.01790 * 13 12 10 16 16 C 1.35899 * 116.99956 * 201.85490 * 15 13 12 17 17 C 1.38727 * 120.05548 * 173.92459 * 16 15 13 18 18 C 1.38144 * 119.94476 * 179.70541 * 17 16 15 19 19 C 1.38268 * 120.05447 * 0.59663 * 18 17 16 20 20 C 1.38266 * 120.11143 * 359.68188 * 19 18 17 21 21 C 1.38143 * 120.05396 * 0.02562 * 20 19 18 22 22 C 1.53777 * 87.07755 * 334.56834 * 13 12 10 23 23 S 1.70964 * 110.10249 * 0.24467 * 8 7 3 24 24 H 1.09004 * 109.46677 * 83.97427 * 1 2 3 25 25 H 1.08990 * 109.47126 * 203.97203 * 1 2 3 26 26 H 1.09002 * 109.47277 * 323.97994 * 1 2 3 27 27 H 1.08998 * 109.47584 * 4.61639 * 4 3 2 28 28 H 0.96696 * 114.00408 * 179.97438 * 5 4 3 29 29 H 1.48499 * 110.00301 * 300.00023 * 6 4 3 30 30 H 1.48503 * 109.99969 * 61.32113 * 6 4 3 31 31 H 0.97005 * 119.99797 * 0.02562 * 9 8 7 32 32 H 1.09001 * 113.61590 * 254.61483 * 12 10 9 33 33 H 1.08996 * 113.61460 * 25.51973 * 12 10 9 34 34 H 1.07998 * 120.02997 * 0.02562 * 17 16 15 35 35 H 1.07998 * 119.97725 * 180.32513 * 18 17 16 36 36 H 1.08000 * 119.95031 * 179.70581 * 19 18 17 37 37 H 1.07996 * 119.97831 * 180.02562 * 20 19 18 38 38 H 1.08000 * 120.02972 * 179.97438 * 21 20 19 39 39 H 1.09000 * 113.61728 * 270.88058 * 22 13 12 40 40 H 1.09002 * 113.61529 * 139.98381 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2899 1.0793 0.0000 4 6 1.7415 2.4829 -0.0006 5 8 2.2806 3.2054 1.1082 6 14 2.2175 3.3349 -1.5875 7 7 3.5851 0.8187 0.0005 8 6 3.9314 -0.4310 0.0015 9 7 5.2384 -0.8927 0.0017 10 6 5.5066 -2.3329 0.0034 11 1 4.6914 -2.9157 -0.4255 12 6 6.8897 -2.7027 -0.5577 13 6 6.9776 -3.7508 0.5643 14 1 6.5659 -4.7216 0.2882 15 8 8.2740 -3.8463 1.1580 16 6 8.5734 -5.0045 1.8029 17 6 9.8540 -5.2161 2.2925 18 6 10.1542 -6.3917 2.9529 19 6 9.1829 -7.3622 3.1154 20 6 7.9073 -7.1562 2.6233 21 6 7.6005 -5.9798 1.9674 22 6 6.0000 -2.8681 1.3579 23 16 2.5413 -1.4261 -0.0050 24 1 -0.3633 0.1079 -1.0220 25 1 -0.3633 -0.9389 0.4175 26 1 -0.3634 0.8312 0.6043 27 1 0.6552 2.4488 0.0818 28 1 1.9705 4.1192 1.1705 29 1 3.6963 3.3882 -1.7117 30 1 1.6362 2.6113 -2.7466 31 1 5.9756 -0.2621 0.0014 32 1 6.8539 -3.1354 -1.5575 33 1 7.6255 -1.9036 -0.4674 34 1 10.6143 -4.4603 2.1620 35 1 11.1496 -6.5547 3.3389 36 1 9.4208 -8.2827 3.6278 37 1 7.1502 -7.9155 2.7517 38 1 6.6041 -5.8194 1.5828 39 1 6.4925 -2.1141 1.9721 40 1 5.2459 -3.4342 1.9048 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_12060302_15704122.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:54:22 Heat of formation + Delta-G solvation = 43.962077 kcal Electronic energy + Delta-G solvation = -23279.447486 eV Core-core repulsion = 19768.209308 eV Total energy + Delta-G solvation = -3511.238178 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 319.103 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.66585 -41.08069 -39.89174 -37.98849 -37.42402 -35.36975 -32.90971 -31.95762 -30.73970 -29.17650 -27.02761 -26.30453 -25.59272 -24.35728 -23.60802 -22.97260 -21.36853 -20.03102 -19.74093 -19.13672 -18.36344 -17.65072 -17.32073 -16.83895 -16.62926 -16.42965 -16.08493 -15.94230 -15.56390 -15.37536 -15.17703 -14.40690 -14.35153 -14.29408 -14.15633 -14.04846 -13.70847 -13.64540 -13.53817 -13.10226 -12.85050 -12.79500 -12.47324 -12.38463 -12.28263 -11.90822 -11.70730 -11.50903 -11.17829 -10.74004 -10.45817 -10.09572 -10.00156 -9.21956 -8.78449 -5.08122 -0.19117 0.01175 0.34318 0.43345 0.56913 1.18537 1.56375 1.67266 1.78876 2.09594 2.29288 2.78588 3.14744 3.21974 3.41466 3.51679 3.57895 3.62649 3.83784 3.91672 3.98186 4.05265 4.15114 4.26153 4.35505 4.38057 4.43825 4.48611 4.52983 4.67465 4.68329 4.70332 4.77204 4.79927 4.85280 4.93583 5.04053 5.17748 5.31157 5.44147 5.52864 5.57225 5.81471 6.13033 6.41297 6.79281 6.93716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.260 4.260 3 C 0.080 3.920 4 C -0.040 4.040 5 O -0.560 6.560 6 Si 0.799 3.201 7 N -0.574 5.574 8 C 0.297 3.703 9 N -0.679 5.679 10 C 0.133 3.867 11 H 0.125 0.875 12 C -0.127 4.127 13 C 0.058 3.942 14 H 0.124 0.876 15 O -0.315 6.315 16 C 0.110 3.890 17 C -0.174 4.174 18 C -0.088 4.088 19 C -0.167 4.167 20 C -0.088 4.088 21 C -0.216 4.216 22 C -0.169 4.169 23 S 0.138 5.862 24 H 0.086 0.914 25 H 0.080 0.920 26 H 0.093 0.907 27 H 0.111 0.889 28 H 0.403 0.597 29 H -0.316 1.316 30 H -0.295 1.295 31 H 0.413 0.587 32 H 0.106 0.894 33 H 0.099 0.901 34 H 0.130 0.870 35 H 0.146 0.854 36 H 0.141 0.859 37 H 0.145 0.855 38 H 0.145 0.855 39 H 0.087 0.913 40 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.423 -2.056 -0.736 4.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.383 4.383 3 C -0.049 4.049 4 C -0.152 4.152 5 O -0.370 6.370 6 Si 0.705 3.295 7 N -0.300 5.300 8 C -0.074 4.074 9 N -0.319 5.319 10 C 0.027 3.973 11 H 0.143 0.857 12 C -0.166 4.166 13 C 0.001 3.999 14 H 0.142 0.858 15 O -0.229 6.229 16 C 0.065 3.935 17 C -0.192 4.192 18 C -0.105 4.105 19 C -0.185 4.185 20 C -0.106 4.106 21 C -0.234 4.234 22 C -0.208 4.208 23 S 0.386 5.614 24 H 0.104 0.896 25 H 0.099 0.901 26 H 0.111 0.889 27 H 0.129 0.871 28 H 0.255 0.745 29 H -0.245 1.245 30 H -0.223 1.223 31 H 0.252 0.748 32 H 0.124 0.876 33 H 0.117 0.883 34 H 0.148 0.852 35 H 0.164 0.836 36 H 0.159 0.841 37 H 0.163 0.837 38 H 0.163 0.837 39 H 0.105 0.895 40 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -3.339 -3.372 -1.426 4.956 hybrid contribution 0.409 0.606 0.307 0.792 sum -2.930 -2.767 -1.119 4.183 Atomic orbital electron populations 1.20350 0.84442 1.04507 1.03871 1.25612 1.02843 0.93151 1.16684 1.19475 0.86657 0.96375 1.02426 1.24466 1.00625 0.88967 1.01151 1.86495 1.72772 1.30232 1.47481 0.95248 0.77211 0.84974 0.72052 1.66148 1.18768 1.17797 1.27284 1.23706 0.93132 0.91706 0.98894 1.44017 1.01201 1.07134 1.79545 1.22393 0.98430 0.78944 0.97507 0.85726 1.23544 0.95244 0.98581 0.99197 1.23953 0.81706 0.99767 0.94461 0.85821 1.86137 1.35212 1.34323 1.67219 1.19256 0.94415 0.85903 0.93936 1.20712 0.94834 0.99992 1.03688 1.21299 1.00604 0.92303 0.96335 1.21443 0.93691 1.00662 1.02745 1.21328 0.97310 0.96631 0.95294 1.21507 1.00105 0.95662 1.06159 1.24121 0.99098 0.99873 0.97723 1.83543 0.95181 1.09169 1.73461 0.89594 0.90089 0.88850 0.87132 0.74525 1.24489 1.22264 0.74849 0.87556 0.88264 0.85189 0.83624 0.84078 0.83710 0.83734 0.89476 0.89032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 0.14 9.79 71.24 0.70 0.84 16 2 C -0.26 -1.42 6.57 24.58 0.16 -1.26 16 3 C 0.08 0.78 4.99 41.40 0.21 0.99 16 4 C -0.04 -0.14 2.87 71.23 0.20 0.06 16 5 O -0.56 -2.60 12.86 -148.98 -1.92 -4.52 16 6 Si 0.80 2.31 32.90 68.60 2.26 4.57 16 7 N -0.57 -7.80 10.17 -189.87 -1.93 -9.73 16 8 C 0.30 2.47 8.24 179.32 1.48 3.95 16 9 N -0.68 -2.23 5.52 -327.92 -1.81 -4.04 16 10 C 0.13 -0.32 4.20 45.52 0.19 -0.13 16 11 H 0.13 -0.61 7.10 -2.39 -0.02 -0.63 16 12 C -0.13 0.46 7.66 31.12 0.24 0.70 16 13 C 0.06 -0.12 3.63 31.12 0.11 0.00 16 14 H 0.12 -0.70 6.05 -2.39 -0.01 -0.72 16 15 O -0.31 -1.37 10.15 -92.42 -0.94 -2.31 16 16 C 0.11 0.52 6.68 22.51 0.15 0.67 16 17 C -0.17 -0.79 9.99 22.36 0.22 -0.57 16 18 C -0.09 -0.16 10.04 22.25 0.22 0.06 16 19 C -0.17 -0.14 10.04 22.28 0.22 0.09 16 20 C -0.09 -0.04 10.04 22.25 0.22 0.18 16 21 C -0.22 -0.32 9.01 22.37 0.20 -0.12 16 22 C -0.17 0.28 7.71 31.12 0.24 0.52 16 23 S 0.14 0.49 21.71 -56.49 -1.23 -0.73 16 24 H 0.09 -0.35 8.14 -2.39 -0.02 -0.37 16 25 H 0.08 -0.31 8.14 -2.39 -0.02 -0.33 16 26 H 0.09 -0.41 7.02 -2.39 -0.02 -0.43 16 27 H 0.11 -0.38 6.20 -2.39 -0.01 -0.40 16 28 H 0.40 -2.94 8.74 -74.06 -0.65 -3.59 16 29 H -0.32 -4.46 7.11 99.48 0.71 -3.76 16 30 H -0.30 -2.32 7.11 99.48 0.71 -1.61 16 31 H 0.41 1.39 8.84 -92.70 -0.82 0.57 16 32 H 0.11 -0.67 8.14 -2.39 -0.02 -0.69 16 33 H 0.10 -0.21 8.11 -2.39 -0.02 -0.23 16 34 H 0.13 0.43 8.06 -2.91 -0.02 0.40 16 35 H 0.15 -0.36 8.06 -2.91 -0.02 -0.38 16 36 H 0.14 -0.46 8.06 -2.91 -0.02 -0.48 16 37 H 0.15 -0.61 8.06 -2.91 -0.02 -0.63 16 38 H 0.15 -0.44 5.95 -2.91 -0.02 -0.46 16 39 H 0.09 0.17 8.14 -2.39 -0.02 0.15 16 40 H 0.09 -0.30 8.14 -2.39 -0.02 -0.32 16 Total: 0.00 -23.57 349.93 -1.13 -24.70 By element: Atomic # 1 Polarization: -13.56 SS G_CDS: -0.34 Total: -13.91 kcal Atomic # 6 Polarization: 1.19 SS G_CDS: 4.78 Total: 5.97 kcal Atomic # 7 Polarization: -10.03 SS G_CDS: -3.74 Total: -13.77 kcal Atomic # 8 Polarization: -3.97 SS G_CDS: -2.85 Total: -6.83 kcal Atomic # 14 Polarization: 2.31 SS G_CDS: 2.26 Total: 4.57 kcal Atomic # 16 Polarization: 0.49 SS G_CDS: -1.23 Total: -0.73 kcal Total: -23.57 -1.13 -24.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_12060302_15704122.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.663 kcal (2) G-P(sol) polarization free energy of solvation -23.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.701 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds