Wall clock time and date at job start Mon Mar 8 2021 04:54:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42896 * 1 3 3 Si 1.86298 * 109.47185 * 2 1 4 4 C 1.50701 * 109.47049 * 240.00051 * 2 1 3 5 5 C 1.37985 * 120.32716 * 120.00129 * 4 2 1 6 6 N 1.32011 * 120.90173 * 180.02562 * 5 4 2 7 7 C 1.32342 * 121.64208 * 0.02562 * 6 5 4 8 8 N 1.39147 * 119.71566 * 180.02562 * 7 6 5 9 9 C 1.46505 * 119.99529 * 0.02562 * 8 7 6 10 10 H 1.09000 * 112.84969 * 334.66182 * 9 8 7 11 11 C 1.53783 * 113.61632 * 105.86490 * 9 8 7 12 12 C 1.53964 * 87.02040 * 139.94725 * 11 9 8 13 13 H 1.09001 * 113.60991 * 89.19804 * 12 11 9 14 14 O 1.42896 * 113.66644 * 220.06801 * 12 11 9 15 15 C 1.35898 * 116.99743 * 254.24685 * 14 12 11 16 16 C 1.38727 * 120.05926 * 5.43377 * 15 14 12 17 17 C 1.38141 * 119.94702 * 179.74973 * 16 15 14 18 18 C 1.38272 * 120.05407 * 0.49956 * 17 16 15 19 19 C 1.38264 * 120.10887 * 359.77266 * 18 17 16 20 20 C 1.38137 * 120.05958 * 359.97438 * 19 18 17 21 21 C 1.53787 * 87.10924 * 334.63636 * 12 11 9 22 22 C 1.39339 * 120.56704 * 0.02562 * 7 6 5 23 23 F 1.35103 * 120.47042 * 179.97438 * 22 7 6 24 24 C 1.38439 * 119.05565 * 359.68895 * 22 7 6 25 25 H 0.96703 * 114.00093 * 299.99946 * 1 2 3 26 26 H 1.09000 * 109.46951 * 120.00500 * 2 1 3 27 27 H 1.48491 * 110.00359 * 299.99845 * 3 2 1 28 28 H 1.48500 * 110.00099 * 61.32378 * 3 2 1 29 29 H 1.07996 * 119.54972 * 0.02562 * 5 4 2 30 30 H 0.96995 * 120.00630 * 180.02562 * 8 7 6 31 31 H 1.08994 * 113.61001 * 254.52386 * 11 9 8 32 32 H 1.08995 * 113.61394 * 25.42812 * 11 9 8 33 33 H 1.08005 * 120.02568 * 359.97438 * 16 15 14 34 34 H 1.07998 * 119.97505 * 180.27371 * 17 16 15 35 35 H 1.07997 * 119.94178 * 179.74998 * 18 17 16 36 36 H 1.08004 * 119.96842 * 179.97438 * 19 18 17 37 37 H 1.07997 * 120.03250 * 179.97438 * 20 19 18 38 38 H 1.08995 * 113.61704 * 270.80920 * 21 12 11 39 39 H 1.09001 * 113.61194 * 139.91082 * 21 12 11 40 40 H 1.08005 * 120.75924 * 180.29057 * 24 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 2.7250 -0.0463 -2.1432 6 7 3.1708 -0.6574 -3.2251 7 6 2.8773 -1.9228 -3.4784 8 7 3.3693 -2.5275 -4.6310 9 6 4.2089 -1.7638 -5.5575 10 1 4.0303 -0.6899 -5.5035 11 6 5.6975 -2.1448 -5.4968 12 6 5.7111 -2.0135 -7.0307 13 1 5.9448 -1.0080 -7.3808 14 8 6.4821 -3.0225 -7.6860 15 6 7.6853 -2.6468 -8.1940 16 6 8.1657 -1.3652 -7.9674 17 6 9.3914 -0.9875 -8.4805 18 6 10.1346 -1.8822 -9.2281 19 6 9.6555 -3.1583 -9.4601 20 6 8.4328 -3.5426 -8.9448 21 6 4.2041 -2.3176 -6.9922 22 6 2.0798 -2.6546 -2.6010 23 9 1.7810 -3.9461 -2.8619 24 6 1.6030 -2.0413 -1.4551 25 1 -0.3933 0.4417 0.7651 26 1 1.7923 -0.5139 0.8899 27 1 1.5616 2.4679 -1.2084 28 1 1.5880 2.4585 1.2243 29 1 2.9850 0.9875 -1.9701 30 1 3.1565 -3.4545 -4.8211 31 1 6.3169 -1.4055 -4.9889 32 1 5.8742 -3.1608 -5.1439 33 1 7.5835 -0.6646 -7.3872 34 1 9.7678 0.0087 -8.3006 35 1 11.0908 -1.5837 -9.6318 36 1 10.2377 -3.8552 -10.0447 37 1 8.0588 -4.5393 -9.1266 38 1 3.9717 -3.3810 -7.0490 39 1 3.6196 -1.7178 -7.6899 40 1 0.9866 -2.5841 -0.7538 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_12060302_17656566.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:54:27 Heat of formation + Delta-G solvation = -4.323411 kcal Electronic energy + Delta-G solvation = -25112.633948 eV Core-core repulsion = 21196.233351 eV Total energy + Delta-G solvation = -3916.400597 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 317.121 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.84266 -41.65864 -41.19127 -39.72854 -38.15643 -37.54777 -35.28045 -33.21251 -31.93142 -31.34358 -30.60090 -27.05711 -26.85172 -25.83542 -24.63689 -23.48915 -22.96809 -22.47233 -20.95566 -19.53153 -19.18646 -18.70792 -18.27584 -17.98245 -17.20774 -16.86334 -16.78777 -16.57788 -16.25579 -16.03197 -15.77309 -15.56184 -15.22814 -15.01612 -14.76163 -14.35468 -14.20612 -14.13095 -13.99461 -13.82068 -13.64106 -13.55301 -12.91722 -12.63276 -12.54890 -12.33904 -12.31167 -12.06124 -11.64950 -11.45952 -11.23813 -10.71667 -10.69096 -10.47803 -9.92027 -9.11248 -8.75713 -5.04575 -0.04714 0.14128 0.42346 0.53409 1.18598 1.52203 1.82601 1.88675 2.34818 2.52208 2.87339 3.06566 3.17866 3.28229 3.35062 3.36024 3.61259 3.65388 3.68331 3.86293 3.92048 3.98615 4.06606 4.17877 4.24625 4.30684 4.47364 4.48376 4.54971 4.57535 4.58873 4.69565 4.72432 4.80122 4.84051 5.00212 5.02541 5.09598 5.38242 5.43205 5.50547 5.64251 5.86261 5.93216 6.16819 6.35912 6.50503 6.94837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.537 6.537 2 C -0.063 4.063 3 Si 0.679 3.321 4 C -0.161 4.161 5 C 0.150 3.850 6 N -0.511 5.511 7 C 0.390 3.610 8 N -0.704 5.704 9 C 0.141 3.859 10 H 0.125 0.875 11 C -0.168 4.168 12 C 0.058 3.942 13 H 0.106 0.894 14 O -0.300 6.300 15 C 0.129 3.871 16 C -0.210 4.210 17 C -0.080 4.080 18 C -0.159 4.159 19 C -0.081 4.081 20 C -0.154 4.154 21 C -0.141 4.141 22 C -0.019 4.019 23 F -0.133 7.133 24 C -0.036 4.036 25 H 0.381 0.619 26 H 0.079 0.921 27 H -0.251 1.251 28 H -0.258 1.258 29 H 0.164 0.836 30 H 0.414 0.586 31 H 0.081 0.919 32 H 0.096 0.904 33 H 0.129 0.871 34 H 0.125 0.875 35 H 0.124 0.876 36 H 0.129 0.871 37 H 0.130 0.870 38 H 0.099 0.901 39 H 0.087 0.913 40 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.216 2.054 1.660 3.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.345 6.345 2 C -0.173 4.173 3 Si 0.579 3.421 4 C -0.166 4.166 5 C -0.007 4.007 6 N -0.228 5.228 7 C 0.152 3.848 8 N -0.337 5.337 9 C 0.035 3.965 10 H 0.143 0.857 11 C -0.207 4.207 12 C 0.001 3.999 13 H 0.124 0.876 14 O -0.213 6.213 15 C 0.083 3.917 16 C -0.228 4.228 17 C -0.098 4.098 18 C -0.177 4.177 19 C -0.099 4.099 20 C -0.173 4.173 21 C -0.179 4.179 22 C -0.045 4.045 23 F -0.112 7.112 24 C -0.063 4.063 25 H 0.230 0.770 26 H 0.097 0.903 27 H -0.175 1.175 28 H -0.183 1.183 29 H 0.181 0.819 30 H 0.252 0.748 31 H 0.100 0.900 32 H 0.114 0.886 33 H 0.147 0.853 34 H 0.143 0.857 35 H 0.142 0.858 36 H 0.147 0.853 37 H 0.148 0.852 38 H 0.118 0.882 39 H 0.106 0.894 40 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 2.607 2.903 0.377 3.920 hybrid contribution -1.764 -1.068 1.112 2.343 sum 0.844 1.835 1.490 2.510 Atomic orbital electron populations 1.86588 1.17792 1.80176 1.49907 1.24567 0.84467 1.10816 0.97499 0.95208 0.91546 0.74415 0.80884 1.19829 1.03634 0.94220 0.98939 1.22265 0.91997 0.98974 0.87444 1.67288 1.26615 1.07396 1.21471 1.18422 0.90022 0.89114 0.87247 1.44462 1.54274 1.14447 1.20468 1.22134 0.89159 0.97767 0.87424 0.85737 1.24122 0.97463 1.03857 0.95282 1.23866 0.91081 0.92371 0.92583 0.87639 1.86154 1.27944 1.37368 1.69856 1.19041 0.85677 0.93251 0.93681 1.21281 0.98948 0.96161 1.06430 1.20998 0.93543 0.99536 0.95725 1.21125 1.00909 0.94238 1.01467 1.21022 0.94654 0.96312 0.97871 1.20494 0.95678 1.00086 1.01011 1.23628 0.94102 1.03590 0.96576 1.17967 1.06835 0.81007 0.98706 1.91495 1.92157 1.33596 1.93950 1.21261 0.95892 0.94376 0.94747 0.77034 0.90327 1.17515 1.18250 0.81932 0.74811 0.89999 0.88586 0.85313 0.85689 0.85799 0.85279 0.85236 0.88244 0.89394 0.83371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -0.15 12.76 -35.23 -0.45 -0.60 16 2 C -0.06 0.07 2.83 36.01 0.10 0.17 16 3 Si 0.68 -1.36 29.82 -169.99 -5.07 -6.43 16 4 C -0.16 -0.10 5.43 -104.47 -0.57 -0.67 16 5 C 0.15 0.08 9.84 -17.57 -0.17 -0.09 16 6 N -0.51 -0.93 9.15 -12.36 -0.11 -1.04 16 7 C 0.39 0.72 7.49 -154.85 -1.16 -0.44 16 8 N -0.70 -0.12 5.51 -53.05 -0.29 -0.41 16 9 C 0.14 -0.12 4.24 -67.11 -0.28 -0.41 16 10 H 0.12 -0.08 7.45 -51.93 -0.39 -0.46 16 11 C -0.17 0.11 7.73 -25.82 -0.20 -0.08 16 12 C 0.06 -0.03 3.69 -25.82 -0.10 -0.13 16 13 H 0.11 -0.18 5.95 -51.93 -0.31 -0.49 16 14 O -0.30 -0.61 10.15 -19.42 -0.20 -0.81 16 15 C 0.13 0.29 6.68 -39.21 -0.26 0.03 16 16 C -0.21 -0.24 9.02 -39.44 -0.36 -0.60 16 17 C -0.08 -0.06 10.04 -39.60 -0.40 -0.46 16 18 C -0.16 -0.12 10.04 -39.56 -0.40 -0.52 16 19 C -0.08 -0.08 10.04 -39.61 -0.40 -0.47 16 20 C -0.15 -0.30 9.99 -39.43 -0.39 -0.69 16 21 C -0.14 0.20 7.66 -25.91 -0.20 0.00 16 22 C -0.02 -0.04 7.35 -39.10 -0.29 -0.33 16 23 F -0.13 -0.34 16.65 2.25 0.04 -0.31 16 24 C -0.04 -0.05 9.76 -39.26 -0.38 -0.43 16 25 H 0.38 -1.40 8.74 45.56 0.40 -1.00 16 26 H 0.08 -0.22 7.96 -51.93 -0.41 -0.64 16 27 H -0.25 -0.26 7.11 56.52 0.40 0.14 16 28 H -0.26 -0.03 7.11 56.52 0.40 0.38 16 29 H 0.16 -0.30 4.88 -52.49 -0.26 -0.56 16 30 H 0.41 -0.30 8.18 -40.82 -0.33 -0.64 16 31 H 0.08 -0.07 8.14 -51.93 -0.42 -0.49 16 32 H 0.10 0.03 8.14 -51.93 -0.42 -0.40 16 33 H 0.13 -0.09 5.91 -52.48 -0.31 -0.40 16 34 H 0.13 -0.15 8.06 -52.49 -0.42 -0.58 16 35 H 0.12 -0.12 8.06 -52.49 -0.42 -0.55 16 36 H 0.13 -0.14 8.06 -52.48 -0.42 -0.57 16 37 H 0.13 0.12 8.06 -52.49 -0.42 -0.30 16 38 H 0.10 -0.13 8.11 -51.93 -0.42 -0.55 16 39 H 0.09 -0.18 8.14 -51.93 -0.42 -0.60 16 40 H 0.15 0.04 8.06 -52.48 -0.42 -0.38 16 LS Contribution 341.96 15.07 5.15 5.15 Total: 0.00 -6.64 341.96 -10.99 -17.63 By element: Atomic # 1 Polarization: -3.46 SS G_CDS: -4.61 Total: -8.07 kcal Atomic # 6 Polarization: 0.33 SS G_CDS: -5.45 Total: -5.12 kcal Atomic # 7 Polarization: -1.04 SS G_CDS: -0.41 Total: -1.45 kcal Atomic # 8 Polarization: -0.76 SS G_CDS: -0.65 Total: -1.41 kcal Atomic # 9 Polarization: -0.34 SS G_CDS: 0.04 Total: -0.31 kcal Atomic # 14 Polarization: -1.36 SS G_CDS: -5.07 Total: -6.43 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -6.64 -10.99 -17.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_12060302_17656566.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.305 kcal (2) G-P(sol) polarization free energy of solvation -6.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds