Wall clock time and date at job start Mon Mar 8 2021 04:54:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42896 * 1 3 3 Si 1.86298 * 109.47185 * 2 1 4 4 C 1.50701 * 109.47049 * 240.00051 * 2 1 3 5 5 C 1.37985 * 120.32716 * 120.00129 * 4 2 1 6 6 N 1.32011 * 120.90173 * 180.02562 * 5 4 2 7 7 C 1.32342 * 121.64208 * 0.02562 * 6 5 4 8 8 N 1.39147 * 119.71566 * 180.02562 * 7 6 5 9 9 C 1.46505 * 119.99529 * 0.02562 * 8 7 6 10 10 H 1.09000 * 112.84969 * 334.66182 * 9 8 7 11 11 C 1.53783 * 113.61632 * 105.86490 * 9 8 7 12 12 C 1.53964 * 87.02040 * 139.94725 * 11 9 8 13 13 H 1.09001 * 113.60991 * 89.19804 * 12 11 9 14 14 O 1.42896 * 113.66644 * 220.06801 * 12 11 9 15 15 C 1.35898 * 116.99743 * 254.24685 * 14 12 11 16 16 C 1.38727 * 120.05926 * 5.43377 * 15 14 12 17 17 C 1.38141 * 119.94702 * 179.74973 * 16 15 14 18 18 C 1.38272 * 120.05407 * 0.49956 * 17 16 15 19 19 C 1.38264 * 120.10887 * 359.77266 * 18 17 16 20 20 C 1.38137 * 120.05958 * 359.97438 * 19 18 17 21 21 C 1.53787 * 87.10924 * 334.63636 * 12 11 9 22 22 C 1.39339 * 120.56704 * 0.02562 * 7 6 5 23 23 F 1.35103 * 120.47042 * 179.97438 * 22 7 6 24 24 C 1.38439 * 119.05565 * 359.68895 * 22 7 6 25 25 H 0.96703 * 114.00093 * 299.99946 * 1 2 3 26 26 H 1.09000 * 109.46951 * 120.00500 * 2 1 3 27 27 H 1.48491 * 110.00359 * 299.99845 * 3 2 1 28 28 H 1.48500 * 110.00099 * 61.32378 * 3 2 1 29 29 H 1.07996 * 119.54972 * 0.02562 * 5 4 2 30 30 H 0.96995 * 120.00630 * 180.02562 * 8 7 6 31 31 H 1.08994 * 113.61001 * 254.52386 * 11 9 8 32 32 H 1.08995 * 113.61394 * 25.42812 * 11 9 8 33 33 H 1.08005 * 120.02568 * 359.97438 * 16 15 14 34 34 H 1.07998 * 119.97505 * 180.27371 * 17 16 15 35 35 H 1.07997 * 119.94178 * 179.74998 * 18 17 16 36 36 H 1.08004 * 119.96842 * 179.97438 * 19 18 17 37 37 H 1.07997 * 120.03250 * 179.97438 * 20 19 18 38 38 H 1.08995 * 113.61704 * 270.80920 * 21 12 11 39 39 H 1.09001 * 113.61194 * 139.91082 * 21 12 11 40 40 H 1.08005 * 120.75924 * 180.29057 * 24 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 2.7250 -0.0463 -2.1432 6 7 3.1708 -0.6574 -3.2251 7 6 2.8773 -1.9228 -3.4784 8 7 3.3693 -2.5275 -4.6310 9 6 4.2089 -1.7638 -5.5575 10 1 4.0303 -0.6899 -5.5035 11 6 5.6975 -2.1448 -5.4968 12 6 5.7111 -2.0135 -7.0307 13 1 5.9448 -1.0080 -7.3808 14 8 6.4821 -3.0225 -7.6860 15 6 7.6853 -2.6468 -8.1940 16 6 8.1657 -1.3652 -7.9674 17 6 9.3914 -0.9875 -8.4805 18 6 10.1346 -1.8822 -9.2281 19 6 9.6555 -3.1583 -9.4601 20 6 8.4328 -3.5426 -8.9448 21 6 4.2041 -2.3176 -6.9922 22 6 2.0798 -2.6546 -2.6010 23 9 1.7810 -3.9461 -2.8619 24 6 1.6030 -2.0413 -1.4551 25 1 -0.3933 0.4417 0.7651 26 1 1.7923 -0.5139 0.8899 27 1 1.5616 2.4679 -1.2084 28 1 1.5880 2.4585 1.2243 29 1 2.9850 0.9875 -1.9701 30 1 3.1565 -3.4545 -4.8211 31 1 6.3169 -1.4055 -4.9889 32 1 5.8742 -3.1608 -5.1439 33 1 7.5835 -0.6646 -7.3872 34 1 9.7678 0.0087 -8.3006 35 1 11.0908 -1.5837 -9.6318 36 1 10.2377 -3.8552 -10.0447 37 1 8.0588 -4.5393 -9.1266 38 1 3.9717 -3.3810 -7.0490 39 1 3.6196 -1.7178 -7.6899 40 1 0.9866 -2.5841 -0.7538 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_12060302_17656566.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:54:26 Heat of formation + Delta-G solvation = 0.180051 kcal Electronic energy + Delta-G solvation = -25112.438664 eV Core-core repulsion = 21196.233351 eV Total energy + Delta-G solvation = -3916.205312 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 317.121 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.98231 -41.67538 -41.22723 -39.72187 -38.13209 -37.55534 -35.29086 -33.26618 -31.95816 -31.36515 -30.63450 -27.02706 -26.80386 -25.83231 -24.67802 -23.52390 -22.99588 -22.49078 -20.92911 -19.55351 -19.21301 -18.67555 -18.29396 -18.05456 -17.21745 -16.97354 -16.78894 -16.58704 -16.26127 -16.04395 -15.74568 -15.59003 -15.23229 -15.02796 -14.83259 -14.36379 -14.23020 -14.16950 -13.98970 -13.84856 -13.60660 -13.55110 -12.91733 -12.60628 -12.53373 -12.30911 -12.28839 -12.07300 -11.63662 -11.45303 -11.21867 -10.76341 -10.74247 -10.42650 -9.96355 -9.16987 -8.79306 -4.89605 -0.11169 0.08000 0.38228 0.47595 1.31003 1.63676 1.82112 1.98832 2.34247 2.47789 2.82887 3.00220 3.22168 3.34589 3.39318 3.40608 3.63921 3.72145 3.73667 3.84781 3.91613 4.00220 4.06687 4.21522 4.32705 4.37312 4.44430 4.49397 4.56459 4.59646 4.64274 4.70442 4.74729 4.85475 4.89488 4.98053 5.03530 5.08521 5.34826 5.40932 5.48177 5.60804 5.86118 5.92954 6.14371 6.47161 6.61083 6.90416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.560 6.560 2 C -0.072 4.072 3 Si 0.762 3.238 4 C -0.167 4.167 5 C 0.147 3.853 6 N -0.522 5.522 7 C 0.381 3.619 8 N -0.702 5.702 9 C 0.145 3.855 10 H 0.125 0.875 11 C -0.163 4.163 12 C 0.055 3.945 13 H 0.118 0.882 14 O -0.316 6.316 15 C 0.110 3.890 16 C -0.217 4.217 17 C -0.088 4.088 18 C -0.168 4.168 19 C -0.087 4.087 20 C -0.174 4.174 21 C -0.135 4.135 22 C -0.037 4.037 23 F -0.140 7.140 24 C -0.042 4.042 25 H 0.397 0.603 26 H 0.100 0.900 27 H -0.293 1.293 28 H -0.284 1.284 29 H 0.184 0.816 30 H 0.416 0.584 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.144 0.856 34 H 0.145 0.855 35 H 0.141 0.859 36 H 0.146 0.854 37 H 0.131 0.869 38 H 0.097 0.903 39 H 0.097 0.903 40 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.714 2.923 1.983 4.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.370 6.370 2 C -0.181 4.181 3 Si 0.667 3.333 4 C -0.172 4.172 5 C -0.010 4.010 6 N -0.239 5.239 7 C 0.143 3.857 8 N -0.335 5.335 9 C 0.040 3.960 10 H 0.143 0.857 11 C -0.203 4.203 12 C -0.001 4.001 13 H 0.136 0.864 14 O -0.230 6.230 15 C 0.066 3.934 16 C -0.235 4.235 17 C -0.106 4.106 18 C -0.186 4.186 19 C -0.105 4.105 20 C -0.192 4.192 21 C -0.173 4.173 22 C -0.064 4.064 23 F -0.119 7.119 24 C -0.068 4.068 25 H 0.248 0.752 26 H 0.118 0.882 27 H -0.220 1.220 28 H -0.210 1.210 29 H 0.200 0.800 30 H 0.255 0.745 31 H 0.103 0.897 32 H 0.103 0.897 33 H 0.161 0.839 34 H 0.162 0.838 35 H 0.159 0.841 36 H 0.164 0.836 37 H 0.149 0.851 38 H 0.115 0.885 39 H 0.116 0.884 40 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 3.112 3.749 0.709 4.924 hybrid contribution -1.943 -1.306 1.029 2.557 sum 1.168 2.443 1.738 3.218 Atomic orbital electron populations 1.86541 1.18536 1.80742 1.51217 1.24797 0.84049 1.11747 0.97528 0.94268 0.90165 0.71847 0.77059 1.20055 1.03488 0.94039 0.99592 1.22648 0.91567 0.99760 0.87013 1.67331 1.27099 1.07395 1.22102 1.18562 0.90163 0.89304 0.87645 1.44530 1.54095 1.14642 1.20201 1.22122 0.88800 0.97656 0.87467 0.85701 1.24052 0.97647 1.03238 0.95326 1.24024 0.91190 0.92561 0.92362 0.86416 1.86129 1.28159 1.38519 1.70148 1.19272 0.85980 0.93945 0.94245 1.21506 0.99401 0.96042 1.06581 1.21323 0.93379 1.00500 0.95353 1.21434 1.01658 0.94173 1.01355 1.21293 0.94468 0.96947 0.97825 1.20708 0.96406 1.00412 1.01717 1.23596 0.93703 1.03612 0.96360 1.18129 1.07831 0.80947 0.99467 1.91468 1.92324 1.34066 1.94075 1.21444 0.95827 0.94868 0.94641 0.75236 0.88181 1.21986 1.21031 0.79988 0.74532 0.89702 0.89729 0.83880 0.83763 0.84089 0.83610 0.85143 0.88478 0.88411 0.82718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -0.07 12.76 -148.98 -1.90 -1.97 16 2 C -0.07 0.21 2.83 71.24 0.20 0.41 16 3 Si 0.76 -3.53 29.82 68.60 2.05 -1.48 16 4 C -0.17 -0.18 5.43 -19.76 -0.11 -0.29 16 5 C 0.15 0.14 9.84 84.61 0.83 0.97 16 6 N -0.52 -2.02 9.15 -193.03 -1.77 -3.79 16 7 C 0.38 1.67 7.49 133.08 1.00 2.67 16 8 N -0.70 -0.78 5.51 -321.76 -1.77 -2.55 16 9 C 0.15 -0.20 4.24 45.52 0.19 -0.01 16 10 H 0.13 -0.15 7.45 -2.39 -0.02 -0.16 16 11 C -0.16 0.13 7.73 31.18 0.24 0.37 16 12 C 0.06 -0.04 3.69 31.19 0.12 0.07 16 13 H 0.12 -0.42 5.95 -2.39 -0.01 -0.43 16 14 O -0.32 -1.59 10.15 -92.40 -0.94 -2.53 16 15 C 0.11 0.59 6.68 22.51 0.15 0.74 16 16 C -0.22 -0.51 9.02 22.36 0.20 -0.30 16 17 C -0.09 -0.09 10.04 22.25 0.22 0.14 16 18 C -0.17 -0.19 10.04 22.28 0.22 0.04 16 19 C -0.09 -0.18 10.04 22.25 0.22 0.04 16 20 C -0.17 -0.83 9.99 22.37 0.22 -0.61 16 21 C -0.13 0.34 7.66 31.12 0.24 0.58 16 22 C -0.04 -0.19 7.35 22.58 0.17 -0.03 16 23 F -0.14 -0.90 16.65 44.97 0.75 -0.15 16 24 C -0.04 -0.13 9.76 22.48 0.22 0.09 16 25 H 0.40 -3.12 8.74 -74.06 -0.65 -3.77 16 26 H 0.10 -0.71 7.96 -2.39 -0.02 -0.73 16 27 H -0.29 -0.70 7.11 99.48 0.71 0.01 16 28 H -0.28 0.08 7.11 99.48 0.71 0.79 16 29 H 0.18 -0.78 4.88 -2.91 -0.01 -0.79 16 30 H 0.42 -0.16 8.18 -92.71 -0.76 -0.92 16 31 H 0.08 -0.12 8.14 -2.39 -0.02 -0.14 16 32 H 0.08 0.14 8.14 -2.39 -0.02 0.13 16 33 H 0.14 -0.24 5.91 -2.91 -0.02 -0.26 16 34 H 0.14 -0.52 8.06 -2.91 -0.02 -0.55 16 35 H 0.14 -0.43 8.06 -2.91 -0.02 -0.45 16 36 H 0.15 -0.35 8.06 -2.91 -0.02 -0.37 16 37 H 0.13 0.43 8.06 -2.91 -0.02 0.41 16 38 H 0.10 -0.18 8.11 -2.39 -0.02 -0.20 16 39 H 0.10 -0.43 8.14 -2.39 -0.02 -0.44 16 40 H 0.16 0.15 8.06 -2.91 -0.02 0.13 16 Total: 0.00 -15.82 341.96 0.49 -15.34 By element: Atomic # 1 Polarization: -7.49 SS G_CDS: -0.27 Total: -7.76 kcal Atomic # 6 Polarization: 0.54 SS G_CDS: 4.34 Total: 4.89 kcal Atomic # 7 Polarization: -2.80 SS G_CDS: -3.54 Total: -6.34 kcal Atomic # 8 Polarization: -1.66 SS G_CDS: -2.84 Total: -4.50 kcal Atomic # 9 Polarization: -0.90 SS G_CDS: 0.75 Total: -0.15 kcal Atomic # 14 Polarization: -3.53 SS G_CDS: 2.05 Total: -1.48 kcal Total: -15.82 0.49 -15.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_12060302_17656566.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.517 kcal (2) G-P(sol) polarization free energy of solvation -15.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.337 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds