Wall clock time and date at job start Mon Mar 8 2021 05:21:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53006 * 109.46542 * 2 1 4 4 C 1.52999 * 109.47159 * 240.00490 * 2 1 3 5 5 Si 1.86293 * 109.47214 * 119.99982 * 2 1 3 6 6 C 1.86300 * 109.47364 * 60.00162 * 5 2 1 7 7 C 1.86303 * 109.47318 * 299.99847 * 5 2 1 8 8 O 1.63102 * 109.47197 * 180.02562 * 5 2 1 9 9 C 1.42902 * 114.00301 * 180.02562 * 8 5 2 10 10 C 1.52999 * 109.47068 * 180.02562 * 9 8 5 11 11 C 1.53120 * 109.51832 * 294.67943 * 10 9 8 12 12 C 1.53043 * 109.27416 * 182.44397 * 11 10 9 13 13 N 1.46841 * 109.52355 * 59.17979 * 12 11 10 14 14 C 1.38621 * 110.99868 * 174.15908 * 13 12 11 15 15 N 1.29686 * 124.94984 * 124.23689 * 14 13 12 16 16 C 1.32118 * 116.86721 * 179.97438 * 15 14 13 17 17 C 1.33323 * 114.57945 * 359.97438 * 16 15 14 18 18 C 1.50697 * 125.95320 * 180.02562 * 17 16 15 19 19 O 1.42901 * 109.47365 * 245.02559 * 18 17 16 20 20 Si 1.86307 * 109.47003 * 5.02601 * 18 17 16 21 21 H 1.48498 * 109.47024 * 60.00009 * 20 18 17 22 22 H 1.48502 * 109.47073 * 179.97438 * 20 18 17 23 23 H 1.48491 * 109.47027 * 299.99976 * 20 18 17 24 24 S 1.70964 * 124.94839 * 303.93182 * 14 13 12 25 25 C 1.46840 * 111.20273 * 298.25709 * 13 12 11 26 26 C 1.53040 * 109.52284 * 61.73873 * 25 13 12 27 27 H 1.09001 * 109.46812 * 299.99757 * 1 2 3 28 28 H 1.09000 * 109.47360 * 60.00124 * 1 2 3 29 29 H 1.09002 * 109.46935 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46785 * 180.02562 * 3 2 1 31 31 H 1.08992 * 109.47342 * 299.99704 * 3 2 1 32 32 H 1.09001 * 109.47369 * 60.00584 * 3 2 1 33 33 H 1.09002 * 109.46716 * 299.99545 * 4 2 1 34 34 H 1.09000 * 109.47486 * 59.99463 * 4 2 1 35 35 H 1.09001 * 109.47362 * 180.02562 * 4 2 1 36 36 H 1.09001 * 109.46570 * 299.99984 * 6 5 2 37 37 H 1.09001 * 109.47076 * 59.99486 * 6 5 2 38 38 H 1.09000 * 109.47204 * 179.97438 * 6 5 2 39 39 H 1.09000 * 109.47332 * 180.02562 * 7 5 2 40 40 H 1.09002 * 109.47176 * 300.00293 * 7 5 2 41 41 H 1.09004 * 109.46801 * 60.00198 * 7 5 2 42 42 H 1.09001 * 109.46918 * 299.99725 * 9 8 5 43 43 H 1.08999 * 109.46857 * 59.99611 * 9 8 5 44 44 H 1.09000 * 109.52598 * 54.87295 * 10 9 8 45 45 H 1.09002 * 109.50604 * 302.38076 * 11 10 9 46 46 H 1.09002 * 109.50513 * 62.50762 * 11 10 9 47 47 H 1.08996 * 109.46193 * 299.16129 * 12 11 10 48 48 H 1.09001 * 109.46175 * 179.19658 * 12 11 10 49 49 H 1.07994 * 122.70531 * 180.02562 * 16 15 14 50 50 H 1.09002 * 109.47347 * 125.02681 * 18 17 16 51 51 H 0.96704 * 113.99981 * 60.00108 * 19 18 17 52 52 H 1.09004 * 109.46059 * 301.72804 * 25 13 12 53 53 H 1.08993 * 109.46548 * 181.76012 * 25 13 12 54 54 H 1.08994 * 109.50517 * 180.88399 * 26 25 13 55 55 H 1.08999 * 109.49819 * 60.76456 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7211 -1.2493 5 14 2.1511 -0.8782 1.5211 6 6 1.5301 -2.6347 1.5211 7 6 1.5301 0.0000 3.0423 8 8 3.7821 -0.8776 1.5214 9 6 4.3634 -1.5308 2.6517 10 6 5.8886 -1.4691 2.5477 11 6 6.3520 -2.2830 1.3363 12 6 7.8811 -2.2681 1.2727 13 7 8.4292 -2.8410 2.5086 14 6 9.8079 -2.9631 2.4308 15 7 10.6480 -2.4505 3.2754 16 6 11.9311 -2.6671 3.0473 17 6 12.1859 -3.3964 1.9607 18 6 13.5512 -3.7955 1.4630 19 8 13.7964 -3.1779 0.1979 20 14 14.8438 -3.2422 2.6853 21 1 14.5890 -3.8841 3.9999 22 1 16.1892 -3.6361 2.1952 23 1 14.7837 -1.7661 2.8352 24 16 10.6481 -3.8174 1.2114 25 6 8.0365 -2.0488 3.6810 26 6 6.5121 -2.0571 3.8165 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.1300 1.4427 -0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6766 1.9564 0.8900 33 1 1.6767 -1.7488 -1.2493 34 1 1.6767 -0.2073 -2.1393 35 1 3.1301 -0.7216 -1.2491 36 1 0.4401 -2.6346 1.5211 37 1 1.8934 -3.1485 0.6311 38 1 1.8939 -3.1486 2.4109 39 1 1.8939 -0.5135 3.9323 40 1 1.8934 1.0277 3.0423 41 1 0.4401 0.0000 3.0423 42 1 4.0414 -1.0311 3.5654 43 1 4.0421 -2.5721 2.6745 44 1 6.2044 -0.4321 2.4335 45 1 6.0019 -3.3107 1.4327 46 1 5.9457 -1.8433 0.4254 47 1 8.2300 -1.2414 1.1624 48 1 8.2149 -2.8585 0.4194 49 1 12.7106 -2.2851 3.6898 50 1 13.5953 -4.8790 1.3530 51 1 13.7724 -2.2114 0.2208 52 1 8.3847 -1.0231 3.5594 53 1 8.4831 -2.4800 4.5769 54 1 6.2201 -1.4562 4.6776 55 1 6.1645 -3.0813 3.9519 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_12102086_15704118.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:21:52 Heat of formation + Delta-G solvation = -83.198107 kcal Electronic energy + Delta-G solvation = -30148.098963 eV Core-core repulsion = 26241.894070 eV Total energy + Delta-G solvation = -3906.204893 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 372.182 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.45964 -39.95512 -38.16067 -37.58559 -36.80223 -34.77408 -32.11167 -31.55539 -29.40268 -29.03276 -28.43083 -27.81829 -27.35143 -26.34214 -24.96758 -24.19981 -23.16460 -21.16813 -20.41130 -20.37795 -19.70743 -17.81997 -17.72011 -17.43526 -16.73487 -16.29334 -16.17871 -16.02946 -15.87816 -15.75410 -15.58378 -15.22021 -14.84221 -14.74497 -14.62841 -14.37267 -14.30755 -14.11459 -13.93789 -13.51885 -13.45877 -13.31410 -13.17962 -13.12846 -12.95335 -12.92950 -12.90797 -12.43721 -12.38030 -12.25522 -12.15452 -12.12511 -11.99866 -11.88924 -11.65403 -11.62101 -11.49516 -11.24940 -11.08195 -10.94948 -10.70099 -10.53425 -10.27003 -10.24626 -10.02419 -9.20490 -0.39601 0.02539 0.61122 1.30490 1.46805 1.53256 1.56793 1.64086 1.84402 1.92592 2.16572 2.46202 2.52535 3.38573 3.48472 3.70450 3.71609 3.77394 3.86522 4.14179 4.15053 4.15520 4.23607 4.28636 4.31330 4.43541 4.46617 4.49849 4.54371 4.64024 4.73050 4.75517 4.76354 4.79246 4.80811 4.81664 4.83801 4.84469 4.85861 4.93404 4.96383 5.02310 5.11334 5.11876 5.14191 5.19607 5.24430 5.36645 5.40671 5.43723 5.47337 5.54309 5.60669 5.66906 5.67493 5.75494 6.60338 6.65151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.384 4.384 3 C -0.136 4.136 4 C -0.136 4.136 5 Si 1.323 2.677 6 C -0.519 4.519 7 C -0.521 4.521 8 O -0.634 6.634 9 C 0.083 3.917 10 C -0.090 4.090 11 C -0.104 4.104 12 C 0.054 3.946 13 N -0.451 5.451 14 C 0.211 3.789 15 N -0.540 5.540 16 C 0.053 3.947 17 C -0.282 4.282 18 C -0.043 4.043 19 O -0.550 6.550 20 Si 0.997 3.003 21 H -0.257 1.257 22 H -0.263 1.263 23 H -0.248 1.248 24 S 0.182 5.818 25 C 0.073 3.927 26 C -0.112 4.112 27 H 0.061 0.939 28 H 0.048 0.952 29 H 0.062 0.938 30 H 0.057 0.943 31 H 0.046 0.954 32 H 0.058 0.942 33 H 0.059 0.941 34 H 0.045 0.955 35 H 0.059 0.941 36 H 0.074 0.926 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.068 0.932 41 H 0.074 0.926 42 H 0.068 0.932 43 H 0.068 0.932 44 H 0.076 0.924 45 H 0.077 0.923 46 H 0.091 0.909 47 H 0.049 0.951 48 H 0.088 0.912 49 H 0.183 0.817 50 H 0.127 0.873 51 H 0.391 0.609 52 H 0.046 0.954 53 H 0.078 0.922 54 H 0.092 0.908 55 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.371 0.107 0.516 1.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.426 4.426 3 C -0.193 4.193 4 C -0.193 4.193 5 Si 1.452 2.548 6 C -0.620 4.620 7 C -0.622 4.622 8 O -0.594 6.594 9 C 0.008 3.992 10 C -0.109 4.109 11 C -0.142 4.142 12 C -0.072 4.072 13 N -0.173 5.173 14 C -0.157 4.157 15 N -0.261 5.261 16 C -0.099 4.099 17 C -0.405 4.405 18 C -0.155 4.155 19 O -0.357 6.357 20 Si 0.818 3.182 21 H -0.181 1.181 22 H -0.187 1.187 23 H -0.171 1.171 24 S 0.436 5.564 25 C -0.056 4.056 26 C -0.150 4.150 27 H 0.080 0.920 28 H 0.067 0.933 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.065 0.935 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.064 0.936 35 H 0.078 0.922 36 H 0.093 0.907 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.090 0.910 40 H 0.087 0.913 41 H 0.093 0.907 42 H 0.086 0.914 43 H 0.086 0.914 44 H 0.095 0.905 45 H 0.096 0.904 46 H 0.109 0.891 47 H 0.068 0.932 48 H 0.106 0.894 49 H 0.200 0.800 50 H 0.145 0.855 51 H 0.240 0.760 52 H 0.064 0.936 53 H 0.097 0.903 54 H 0.110 0.890 55 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -1.284 -0.883 0.358 1.599 hybrid contribution -0.053 1.367 0.534 1.469 sum -1.337 0.484 0.893 1.679 Atomic orbital electron populations 1.21607 0.93974 1.02187 1.02079 1.25956 1.00317 1.02924 1.13447 1.21533 1.01001 0.95146 1.01651 1.21531 1.01084 1.00012 0.96678 0.76054 0.51031 0.64143 0.63595 1.27123 1.07313 1.23026 1.04558 1.27150 1.07343 1.09213 1.18486 1.85335 1.48686 1.77066 1.48274 1.22191 0.93248 0.96849 0.86932 1.21296 0.94164 1.00397 0.95011 1.21608 0.91443 1.01507 0.99614 1.22528 0.97410 0.98442 0.88821 1.59176 1.01356 1.49789 1.06936 1.25440 0.94950 0.98950 0.96361 1.66839 1.02515 1.25629 1.31138 1.21677 0.92609 0.98758 0.96900 1.26514 1.00513 1.10366 1.03077 1.24586 0.94306 1.02859 0.93759 1.86502 1.93556 1.26014 1.29586 0.85041 0.76353 0.80687 0.76161 1.18089 1.18682 1.17126 1.83989 0.96483 1.49516 1.26448 1.22037 0.96687 0.95539 0.91322 1.21685 0.92319 1.02937 0.98036 0.91965 0.93258 0.91857 0.92370 0.93534 0.92292 0.92151 0.93571 0.92231 0.90709 0.91098 0.91074 0.91044 0.91300 0.90693 0.91408 0.91404 0.90544 0.90440 0.89100 0.93215 0.89402 0.79997 0.85514 0.75998 0.93596 0.90317 0.88983 0.90147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 0.22 7.85 71.98 0.56 0.78 16 2 C -0.38 0.49 0.53 -10.79 -0.01 0.48 16 3 C -0.14 0.02 7.85 71.98 0.56 0.58 16 4 C -0.14 0.07 7.85 71.98 0.56 0.63 16 5 Si 1.32 -4.82 8.45 68.60 0.58 -4.24 16 6 C -0.52 1.50 8.50 113.37 0.96 2.46 16 7 C -0.52 1.34 8.50 113.37 0.96 2.31 16 8 O -0.63 1.28 8.16 -148.98 -1.22 0.07 16 9 C 0.08 -0.35 4.51 71.98 0.32 -0.02 16 10 C -0.09 0.29 2.49 -10.71 -0.03 0.27 16 11 C -0.10 0.28 5.25 30.65 0.16 0.44 16 12 C 0.05 -0.02 5.33 86.33 0.46 0.44 16 13 N -0.45 -1.19 4.72 -708.91 -3.35 -4.54 16 14 C 0.21 1.11 6.73 179.32 1.21 2.31 16 15 N -0.54 -3.94 9.45 -202.03 -1.91 -5.85 16 16 C 0.05 0.20 10.07 83.54 0.84 1.05 16 17 C -0.28 -0.57 5.92 24.57 0.15 -0.43 16 18 C -0.04 0.05 3.08 71.23 0.22 0.27 16 19 O -0.55 0.13 12.88 -148.98 -1.92 -1.79 16 20 Si 1.00 -2.38 25.78 68.60 1.77 -0.61 16 21 H -0.26 0.19 7.11 99.48 0.71 0.90 16 22 H -0.26 -0.06 7.11 99.48 0.71 0.65 16 23 H -0.25 0.62 7.11 99.48 0.71 1.33 16 24 S 0.18 0.50 22.27 -56.49 -1.26 -0.76 16 25 C 0.07 0.09 4.83 86.33 0.42 0.51 16 26 C -0.11 0.39 5.38 30.65 0.16 0.55 16 27 H 0.06 -0.18 7.79 -2.39 -0.02 -0.20 16 28 H 0.05 -0.01 8.14 -2.39 -0.02 -0.03 16 29 H 0.06 -0.19 7.79 -2.39 -0.02 -0.21 16 30 H 0.06 0.01 7.97 -2.38 -0.02 -0.01 16 31 H 0.05 0.05 8.14 -2.39 -0.02 0.03 16 32 H 0.06 -0.07 7.79 -2.39 -0.02 -0.09 16 33 H 0.06 -0.11 7.79 -2.39 -0.02 -0.13 16 34 H 0.05 0.03 8.14 -2.39 -0.02 0.01 16 35 H 0.06 -0.03 7.96 -2.39 -0.02 -0.05 16 36 H 0.07 -0.23 7.79 -2.39 -0.02 -0.24 16 37 H 0.07 -0.16 7.79 -2.39 -0.02 -0.18 16 38 H 0.07 -0.26 7.48 -2.39 -0.02 -0.28 16 39 H 0.07 -0.25 7.48 -2.39 -0.02 -0.27 16 40 H 0.07 -0.12 7.79 -2.39 -0.02 -0.13 16 41 H 0.07 -0.21 7.79 -2.38 -0.02 -0.23 16 42 H 0.07 -0.44 7.21 -2.39 -0.02 -0.46 16 43 H 0.07 -0.43 7.21 -2.39 -0.02 -0.44 16 44 H 0.08 -0.14 8.14 -2.39 -0.02 -0.16 16 45 H 0.08 -0.22 8.14 -2.39 -0.02 -0.24 16 46 H 0.09 -0.25 7.91 -2.39 -0.02 -0.27 16 47 H 0.05 0.02 8.14 -2.39 -0.02 0.00 16 48 H 0.09 -0.12 7.34 -2.39 -0.02 -0.14 16 49 H 0.18 0.03 5.87 -2.91 -0.02 0.01 16 50 H 0.13 -0.35 7.96 -2.39 -0.02 -0.37 16 51 H 0.39 -2.55 8.70 -74.05 -0.64 -3.20 16 52 H 0.05 0.13 8.14 -2.38 -0.02 0.11 16 53 H 0.08 0.29 7.87 -2.39 -0.02 0.27 16 54 H 0.09 -0.55 8.14 -2.39 -0.02 -0.57 16 55 H 0.08 -0.30 8.14 -2.39 -0.02 -0.32 16 Total: 0.00 -11.15 434.24 1.18 -9.97 By element: Atomic # 1 Polarization: -5.85 SS G_CDS: 0.95 Total: -4.89 kcal Atomic # 6 Polarization: 5.11 SS G_CDS: 7.53 Total: 12.63 kcal Atomic # 7 Polarization: -5.13 SS G_CDS: -5.26 Total: -10.39 kcal Atomic # 8 Polarization: 1.41 SS G_CDS: -3.13 Total: -1.72 kcal Atomic # 14 Polarization: -7.20 SS G_CDS: 2.35 Total: -4.85 kcal Atomic # 16 Polarization: 0.50 SS G_CDS: -1.26 Total: -0.76 kcal Total: -11.15 1.18 -9.97 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_12102086_15704118.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.226 kcal (2) G-P(sol) polarization free energy of solvation -11.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -9.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds