Wall clock time and date at job start Mon Mar 8 2021 05:26:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53004 * 109.47319 * 2 1 4 4 C 1.53001 * 109.47243 * 239.99938 * 2 1 3 5 5 Si 1.86306 * 109.46998 * 120.00021 * 2 1 3 6 6 C 1.86298 * 109.46989 * 300.00018 * 5 2 1 7 7 C 1.86298 * 109.46713 * 180.02562 * 5 2 1 8 8 O 1.63098 * 109.47091 * 60.00148 * 5 2 1 9 9 C 1.42901 * 113.99632 * 180.02562 * 8 5 2 10 10 C 1.53124 * 109.53495 * 150.17705 * 9 8 5 11 11 C 1.53118 * 109.16053 * 177.61296 * 10 9 8 12 12 C 1.53040 * 109.27938 * 302.34213 * 11 10 9 13 13 N 1.46849 * 109.51857 * 59.17931 * 12 11 10 14 14 C 1.38404 * 110.99849 * 174.15995 * 13 12 11 15 15 N 1.32494 * 119.21587 * 304.21324 * 14 13 12 16 16 C 1.32281 * 120.74297 * 179.97438 * 15 14 13 17 17 C 1.38603 * 119.19305 * 0.02562 * 16 15 14 18 18 C 1.50706 * 120.72087 * 180.02562 * 17 16 15 19 19 O 1.42906 * 109.46702 * 299.99510 * 18 17 16 20 20 Si 1.86301 * 109.47233 * 179.97438 * 18 17 16 21 21 H 1.48505 * 109.47118 * 60.00057 * 20 18 17 22 22 H 1.48496 * 109.46781 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.46934 * 299.99745 * 20 18 17 24 24 C 1.38604 * 118.55874 * 0.26989 * 17 16 15 25 25 N 1.32277 * 119.19966 * 359.44931 * 24 17 16 26 26 C 1.46843 * 111.20254 * 298.25894 * 13 12 11 27 27 H 1.09002 * 109.47487 * 300.00011 * 1 2 3 28 28 H 1.08996 * 109.47274 * 60.00423 * 1 2 3 29 29 H 1.09005 * 109.47529 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46760 * 180.02562 * 3 2 1 31 31 H 1.08996 * 109.46602 * 299.99988 * 3 2 1 32 32 H 1.09002 * 109.46850 * 59.99598 * 3 2 1 33 33 H 1.09005 * 109.47248 * 300.00013 * 4 2 1 34 34 H 1.08996 * 109.47281 * 59.99643 * 4 2 1 35 35 H 1.09000 * 109.47146 * 180.02562 * 4 2 1 36 36 H 1.09000 * 109.46814 * 180.02562 * 6 5 2 37 37 H 1.09005 * 109.46972 * 299.99651 * 6 5 2 38 38 H 1.08991 * 109.47007 * 59.99870 * 6 5 2 39 39 H 1.09000 * 109.47527 * 299.99341 * 7 5 2 40 40 H 1.08997 * 109.47691 * 60.00411 * 7 5 2 41 41 H 1.09007 * 109.47151 * 179.97438 * 7 5 2 42 42 H 1.08997 * 109.50410 * 30.07726 * 9 8 5 43 43 H 1.08999 * 109.51897 * 297.51830 * 10 9 8 44 44 H 1.08999 * 109.52220 * 57.70317 * 10 9 8 45 45 H 1.09002 * 109.50362 * 62.28880 * 11 10 9 46 46 H 1.09005 * 109.50133 * 182.36392 * 11 10 9 47 47 H 1.09001 * 109.46398 * 299.17038 * 12 11 10 48 48 H 1.08998 * 109.46058 * 179.19389 * 12 11 10 49 49 H 1.08000 * 120.40685 * 180.02562 * 16 15 14 50 50 H 1.09000 * 109.47318 * 59.99089 * 18 17 16 51 51 H 0.96698 * 113.99410 * 179.97438 * 19 18 17 52 52 H 1.08005 * 120.39815 * 179.72617 * 24 17 16 53 53 H 1.09002 * 109.46633 * 181.75988 * 26 13 12 54 54 H 1.09008 * 109.46248 * 301.73853 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 14 2.1509 -0.8783 1.5212 6 6 1.5299 0.0000 3.0423 7 6 4.0139 -0.8775 1.5215 8 8 1.6073 -2.4160 1.5211 9 6 2.0285 -3.1813 2.6520 10 6 0.9722 -4.2419 2.9747 11 6 1.4590 -5.0949 4.1494 12 6 2.8042 -5.7297 3.7896 13 7 3.7803 -4.6743 3.4901 14 6 5.0413 -5.2078 3.2879 15 7 5.5830 -5.9631 4.2321 16 6 6.7861 -6.4887 4.0703 17 6 7.4801 -6.2402 2.8965 18 6 8.8527 -6.8221 2.6758 19 8 9.7381 -6.3536 3.6949 20 14 9.4904 -6.2932 1.0071 21 1 9.5665 -4.8111 0.9532 22 1 10.8431 -6.8661 0.7899 23 1 8.5701 -6.7805 -0.0516 24 6 6.8865 -5.4408 1.9323 25 7 5.6782 -4.9508 2.1549 26 6 3.3572 -3.8715 2.3357 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 3.1300 1.4424 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.6766 -1.7490 -1.2492 34 1 1.6766 -0.2075 -2.1392 35 1 3.1300 -0.7217 -1.2490 36 1 1.8936 -0.5136 3.9322 37 1 1.8933 1.0277 3.0423 38 1 0.4400 0.0000 3.0422 39 1 4.3777 -1.3912 0.6316 40 1 4.3769 0.1502 1.5218 41 1 4.3773 -1.3910 2.4118 42 1 2.1562 -2.5220 3.5105 43 1 0.0355 -3.7532 3.2429 44 1 0.8160 -4.8774 2.1030 45 1 1.5777 -4.4657 5.0315 46 1 0.7301 -5.8785 4.3568 47 1 2.6817 -6.3696 2.9156 48 1 3.1604 -6.3263 4.6294 49 1 7.2223 -7.1039 4.8433 50 1 8.7968 -7.9099 2.7150 51 1 10.6415 -6.6891 3.6157 52 1 7.4025 -5.2243 1.0085 53 1 4.1151 -3.1186 2.1194 54 1 3.2319 -4.5202 1.4686 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_12102090_12175864.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:26:04 Heat of formation + Delta-G solvation = -56.833084 kcal Electronic energy + Delta-G solvation = -30971.923325 eV Core-core repulsion = 27067.821167 eV Total energy + Delta-G solvation = -3904.102158 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 353.205 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.54676 -40.39150 -38.08356 -37.32117 -36.84574 -35.00450 -34.58892 -32.36752 -30.99436 -29.30898 -29.12581 -27.87687 -27.51573 -27.30338 -26.08484 -25.09019 -23.72790 -22.92289 -21.10842 -20.41226 -19.28457 -19.04538 -18.34714 -17.72097 -16.91303 -16.50285 -16.38797 -16.03278 -15.98923 -15.69458 -15.60598 -15.17231 -14.94048 -14.87567 -14.77618 -14.71250 -14.36711 -14.11364 -14.07719 -13.84228 -13.62440 -13.38233 -13.31407 -13.16163 -13.09675 -12.95331 -12.90918 -12.41297 -12.38404 -12.23759 -12.13512 -12.05779 -11.97684 -11.93546 -11.73842 -11.70450 -11.66313 -11.48004 -11.17800 -11.06805 -10.68712 -10.40081 -10.08327 -10.04092 -9.53248 -0.31044 -0.04171 1.11678 1.35607 1.41958 1.48356 1.75752 1.88882 1.99059 2.06674 2.44515 2.51919 2.94434 3.32521 3.47432 3.51806 3.70748 3.73709 3.82129 3.90753 3.99491 4.09756 4.11148 4.11855 4.14151 4.37495 4.45074 4.47894 4.50689 4.53959 4.63726 4.66672 4.70961 4.72294 4.75092 4.76805 4.81313 4.83262 4.86100 4.98438 4.99443 5.06853 5.08583 5.09205 5.13813 5.19191 5.23532 5.33624 5.40074 5.41817 5.44816 5.53364 5.57242 5.60400 5.69392 6.01695 6.82375 6.94360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.376 4.376 3 C -0.142 4.142 4 C -0.137 4.137 5 Si 1.305 2.695 6 C -0.515 4.515 7 C -0.519 4.519 8 O -0.623 6.623 9 C 0.117 3.883 10 C -0.123 4.123 11 C -0.112 4.112 12 C 0.061 3.939 13 N -0.461 5.461 14 C 0.480 3.520 15 N -0.543 5.543 16 C 0.201 3.799 17 C -0.214 4.214 18 C -0.058 4.058 19 O -0.562 6.562 20 Si 0.960 3.040 21 H -0.273 1.273 22 H -0.243 1.243 23 H -0.255 1.255 24 C 0.159 3.841 25 N -0.563 5.563 26 C 0.034 3.966 27 H 0.061 0.939 28 H 0.050 0.950 29 H 0.057 0.943 30 H 0.060 0.940 31 H 0.053 0.947 32 H 0.064 0.936 33 H 0.056 0.944 34 H 0.051 0.949 35 H 0.057 0.943 36 H 0.067 0.933 37 H 0.078 0.922 38 H 0.076 0.924 39 H 0.068 0.932 40 H 0.078 0.922 41 H 0.061 0.939 42 H 0.075 0.925 43 H 0.089 0.911 44 H 0.072 0.928 45 H 0.080 0.920 46 H 0.104 0.896 47 H 0.046 0.954 48 H 0.096 0.904 49 H 0.199 0.801 50 H 0.111 0.889 51 H 0.403 0.597 52 H 0.174 0.826 53 H 0.095 0.905 54 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.651 -3.449 0.151 3.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.419 4.419 3 C -0.199 4.199 4 C -0.194 4.194 5 Si 1.436 2.564 6 C -0.617 4.617 7 C -0.620 4.620 8 O -0.582 6.582 9 C 0.060 3.940 10 C -0.161 4.161 11 C -0.150 4.150 12 C -0.064 4.064 13 N -0.181 5.181 14 C 0.124 3.876 15 N -0.261 5.261 16 C 0.033 3.967 17 C -0.220 4.220 18 C -0.170 4.170 19 O -0.372 6.372 20 Si 0.784 3.216 21 H -0.197 1.197 22 H -0.166 1.166 23 H -0.179 1.179 24 C -0.008 4.008 25 N -0.283 5.283 26 C -0.093 4.093 27 H 0.080 0.920 28 H 0.069 0.931 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.083 0.917 33 H 0.075 0.925 34 H 0.070 0.930 35 H 0.076 0.924 36 H 0.086 0.914 37 H 0.098 0.902 38 H 0.095 0.905 39 H 0.087 0.913 40 H 0.097 0.903 41 H 0.080 0.920 42 H 0.092 0.908 43 H 0.107 0.893 44 H 0.091 0.909 45 H 0.099 0.901 46 H 0.123 0.877 47 H 0.064 0.936 48 H 0.115 0.885 49 H 0.215 0.785 50 H 0.129 0.871 51 H 0.254 0.746 52 H 0.191 0.809 53 H 0.113 0.887 54 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.273 -2.353 -0.068 2.369 hybrid contribution 1.630 -0.413 -0.575 1.778 sum 1.903 -2.766 -0.644 3.418 Atomic orbital electron populations 1.21545 0.93866 1.01960 1.02029 1.25799 1.00666 1.02878 1.12558 1.21613 1.01169 0.94681 1.02410 1.21543 1.00858 1.00079 0.96949 0.76434 0.62084 0.53173 0.64740 1.27056 1.07198 1.09731 1.17695 1.27338 1.25988 1.04716 1.03937 1.85406 1.78355 1.46377 1.48022 1.21580 0.92306 0.93587 0.86561 1.21817 0.98534 0.96804 0.98951 1.21649 0.94494 1.00396 0.98459 1.22382 0.91313 0.90960 1.01723 1.58356 0.99327 1.22694 1.37768 1.21262 0.93067 0.88311 0.84948 1.68116 1.14208 1.13013 1.30734 1.23461 0.86734 0.91270 0.95218 1.21159 0.99216 1.03406 0.98204 1.24377 0.87788 1.02289 1.02574 1.86448 1.25155 1.74574 1.50977 0.85534 0.81094 0.79919 0.75045 1.19749 1.16625 1.17901 1.23212 0.89802 0.88883 0.98864 1.68386 1.11335 1.27200 1.21335 1.22842 0.98310 0.98000 0.90134 0.91959 0.93061 0.92355 0.92081 0.92774 0.91717 0.92524 0.92977 0.92439 0.91370 0.90250 0.90533 0.91261 0.90312 0.92038 0.90761 0.89259 0.90917 0.90119 0.87742 0.93574 0.88545 0.78455 0.87111 0.74553 0.80921 0.88655 0.92547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.14 7.85 71.98 0.56 0.42 16 2 C -0.38 -0.36 0.53 -10.79 -0.01 -0.36 16 3 C -0.14 -0.01 7.85 71.98 0.56 0.56 16 4 C -0.14 -0.28 7.85 71.98 0.56 0.29 16 5 Si 1.31 0.56 8.07 68.60 0.55 1.12 16 6 C -0.51 -0.15 8.56 113.37 0.97 0.82 16 7 C -0.52 -1.40 7.42 113.37 0.84 -0.56 16 8 O -0.62 -1.76 8.29 -148.98 -1.23 -2.99 16 9 C 0.12 0.28 2.31 30.65 0.07 0.35 16 10 C -0.12 0.07 5.66 30.68 0.17 0.24 16 11 C -0.11 0.23 6.09 30.65 0.19 0.42 16 12 C 0.06 0.13 5.33 86.33 0.46 0.59 16 13 N -0.46 -2.98 4.72 -708.93 -3.34 -6.32 16 14 C 0.48 4.34 7.17 261.49 1.88 6.22 16 15 N -0.54 -4.25 9.65 -197.99 -1.91 -6.16 16 16 C 0.20 0.61 10.92 84.71 0.93 1.53 16 17 C -0.21 -0.38 5.43 -19.69 -0.11 -0.49 16 18 C -0.06 0.27 2.84 71.24 0.20 0.47 16 19 O -0.56 2.12 12.76 -148.98 -1.90 0.22 16 20 Si 0.96 -3.64 25.15 68.60 1.73 -1.91 16 21 H -0.27 -0.23 7.11 99.48 0.71 0.48 16 22 H -0.24 1.10 7.11 99.48 0.71 1.81 16 23 H -0.25 0.62 7.11 99.48 0.71 1.33 16 24 C 0.16 0.76 9.92 84.71 0.84 1.60 16 25 N -0.56 -5.05 8.68 -197.98 -1.72 -6.77 16 26 C 0.03 0.19 4.02 86.33 0.35 0.54 16 27 H 0.06 -0.03 7.79 -2.39 -0.02 -0.05 16 28 H 0.05 0.08 8.14 -2.39 -0.02 0.06 16 29 H 0.06 0.08 7.97 -2.38 -0.02 0.07 16 30 H 0.06 -0.06 7.79 -2.39 -0.02 -0.08 16 31 H 0.05 0.04 8.14 -2.39 -0.02 0.02 16 32 H 0.06 -0.10 7.79 -2.39 -0.02 -0.12 16 33 H 0.06 0.15 7.97 -2.38 -0.02 0.13 16 34 H 0.05 0.11 8.14 -2.39 -0.02 0.09 16 35 H 0.06 0.07 7.79 -2.39 -0.02 0.05 16 36 H 0.07 0.03 7.10 -2.39 -0.02 0.02 16 37 H 0.08 -0.05 7.79 -2.38 -0.02 -0.06 16 38 H 0.08 -0.01 7.79 -2.39 -0.02 -0.03 16 39 H 0.07 0.25 7.79 -2.39 -0.02 0.23 16 40 H 0.08 0.10 7.79 -2.39 -0.02 0.08 16 41 H 0.06 0.28 6.45 -2.38 -0.02 0.26 16 42 H 0.07 0.08 6.15 -2.39 -0.01 0.07 16 43 H 0.09 -0.22 8.14 -2.39 -0.02 -0.24 16 44 H 0.07 0.02 8.14 -2.39 -0.02 0.00 16 45 H 0.08 -0.16 8.14 -2.39 -0.02 -0.18 16 46 H 0.10 -0.60 8.14 -2.38 -0.02 -0.62 16 47 H 0.05 0.11 8.14 -2.39 -0.02 0.09 16 48 H 0.10 0.25 7.55 -2.39 -0.02 0.23 16 49 H 0.20 -0.55 8.06 -2.91 -0.02 -0.57 16 50 H 0.11 -1.11 7.96 -2.39 -0.02 -1.13 16 51 H 0.40 -5.18 8.74 -74.06 -0.65 -5.83 16 52 H 0.17 0.16 5.04 -2.91 -0.01 0.15 16 53 H 0.10 0.67 4.36 -2.39 -0.01 0.66 16 54 H 0.06 0.40 8.10 -2.38 -0.02 0.38 16 Total: 0.00 -14.51 411.30 1.63 -12.88 By element: Atomic # 1 Polarization: -3.68 SS G_CDS: 0.98 Total: -2.70 kcal Atomic # 6 Polarization: 4.16 SS G_CDS: 8.48 Total: 12.63 kcal Atomic # 7 Polarization: -12.28 SS G_CDS: -6.97 Total: -19.25 kcal Atomic # 8 Polarization: 0.36 SS G_CDS: -3.14 Total: -2.77 kcal Atomic # 14 Polarization: -3.07 SS G_CDS: 2.28 Total: -0.79 kcal Total: -14.51 1.63 -12.88 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_12102090_12175864.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.951 kcal (2) G-P(sol) polarization free energy of solvation -14.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -12.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds