Wall clock time and date at job start Mon Mar 8 2021 05:26:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47296 * 2 1 4 4 C 1.53002 * 109.47317 * 239.99471 * 2 1 3 5 5 Si 1.86308 * 109.46934 * 120.00176 * 2 1 3 6 6 C 1.86303 * 109.46787 * 299.99825 * 5 2 1 7 7 C 1.86292 * 109.46976 * 180.02562 * 5 2 1 8 8 O 1.63099 * 109.47312 * 59.99478 * 5 2 1 9 9 C 1.42896 * 113.99942 * 179.97438 * 8 5 2 10 10 C 1.53123 * 109.50094 * 90.08250 * 9 8 5 11 11 C 1.53203 * 109.11533 * 177.59321 * 10 9 8 12 12 C 1.53030 * 109.30370 * 302.37368 * 11 10 9 13 13 N 1.46846 * 109.52435 * 59.17688 * 12 11 10 14 14 C 1.39011 * 110.99974 * 174.16385 * 13 12 11 15 15 C 1.39091 * 119.70491 * 303.93362 * 14 13 12 16 16 C 1.38341 * 119.09730 * 179.79281 * 15 14 13 17 17 C 1.38831 * 118.50592 * 0.47729 * 16 15 14 18 18 C 1.50703 * 120.33620 * 179.72389 * 17 16 15 19 19 O 1.42897 * 109.47097 * 65.02376 * 18 17 16 20 20 Si 1.86302 * 109.47138 * 185.02097 * 18 17 16 21 21 H 1.48497 * 109.47045 * 60.00195 * 20 18 17 22 22 H 1.48504 * 109.46997 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47271 * 300.00106 * 20 18 17 24 24 C 1.38070 * 119.32858 * 359.74469 * 17 16 15 25 25 N 1.31938 * 120.85205 * 0.02562 * 24 17 16 26 26 C 1.46856 * 111.19871 * 298.25760 * 13 12 11 27 27 H 1.08997 * 109.47053 * 300.00154 * 1 2 3 28 28 H 1.09004 * 109.46778 * 59.99839 * 1 2 3 29 29 H 1.08997 * 109.47109 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46966 * 179.97438 * 3 2 1 31 31 H 1.08995 * 109.47140 * 299.99909 * 3 2 1 32 32 H 1.08997 * 109.47196 * 59.99933 * 3 2 1 33 33 H 1.08997 * 109.47503 * 300.00948 * 4 2 1 34 34 H 1.09008 * 109.46629 * 60.00093 * 4 2 1 35 35 H 1.09001 * 109.47348 * 179.97438 * 4 2 1 36 36 H 1.08995 * 109.46902 * 180.02562 * 6 5 2 37 37 H 1.09003 * 109.47068 * 299.99871 * 6 5 2 38 38 H 1.09001 * 109.47128 * 59.99889 * 6 5 2 39 39 H 1.08996 * 109.47529 * 299.99736 * 7 5 2 40 40 H 1.09003 * 109.47491 * 59.99754 * 7 5 2 41 41 H 1.09008 * 109.47237 * 179.97438 * 7 5 2 42 42 H 1.09002 * 109.50409 * 330.00429 * 9 8 5 43 43 H 1.08994 * 109.52349 * 297.53958 * 10 9 8 44 44 H 1.08997 * 109.52263 * 57.72920 * 10 9 8 45 45 H 1.08997 * 109.49417 * 182.41991 * 11 10 9 46 46 H 1.09005 * 109.49195 * 62.32110 * 11 10 9 47 47 H 1.09004 * 109.46094 * 299.16423 * 12 11 10 48 48 H 1.08994 * 109.46717 * 179.19390 * 12 11 10 49 49 H 1.07999 * 120.44849 * 0.02562 * 15 14 13 50 50 H 1.08008 * 120.74581 * 180.24555 * 16 15 14 51 51 H 1.08998 * 109.47225 * 305.02056 * 18 17 16 52 52 H 0.96696 * 114.00371 * 59.99712 * 19 18 17 53 53 H 1.07999 * 119.56993 * 180.02562 * 24 17 16 54 54 H 1.09000 * 109.46462 * 301.73144 * 26 13 12 55 55 H 1.09002 * 109.45930 * 181.75412 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7214 -1.2492 5 14 2.1510 -0.8783 1.5212 6 6 1.5300 0.0000 3.0423 7 6 4.0139 -0.8776 1.5216 8 8 1.6072 -2.4160 1.5212 9 6 2.0293 -3.1817 2.6515 10 6 1.0011 -3.0406 3.7773 11 6 1.4313 -3.9119 4.9617 12 6 1.5663 -5.3642 4.4986 13 7 2.5612 -5.4454 3.4217 14 6 2.8045 -6.7673 3.0669 15 6 3.2146 -7.6768 4.0360 16 6 3.4491 -8.9901 3.6699 17 6 3.2745 -9.3484 2.3400 18 6 3.5244 -10.7663 1.8947 19 8 2.5742 -11.6349 2.5149 20 14 3.3495 -10.8756 0.0431 21 1 4.3369 -9.9730 -0.6015 22 1 3.5964 -12.2726 -0.3958 23 1 1.9765 -10.4682 -0.3494 24 6 2.8699 -8.3926 1.4296 25 7 2.6491 -7.1481 1.8081 26 6 2.1469 -4.6552 2.2552 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 3.1301 1.4424 0.0005 31 1 1.6768 1.9563 -0.8899 32 1 1.6768 1.9563 0.8899 33 1 1.6767 -1.7490 -1.2492 34 1 1.6767 -0.2075 -2.1392 35 1 3.1301 -0.7210 -1.2494 36 1 1.8936 -0.5136 3.9322 37 1 1.8934 1.0277 3.0423 38 1 0.4399 0.0001 3.0422 39 1 4.3777 -1.3912 0.6317 40 1 4.3770 0.1502 1.5218 41 1 4.3773 -1.3911 2.4118 42 1 2.9979 -2.8189 2.9956 43 1 0.9459 -1.9984 4.0917 44 1 0.0240 -3.3669 3.4212 45 1 0.6814 -3.8496 5.7504 46 1 2.3904 -3.5607 5.3423 47 1 0.6034 -5.7192 4.1310 48 1 1.8861 -5.9843 5.3360 49 1 3.3446 -7.3627 5.0612 50 1 3.7645 -9.7194 4.4015 51 1 4.5322 -11.0653 2.1827 52 1 1.6541 -11.4271 2.3025 53 1 2.7325 -8.6671 0.3941 54 1 1.1813 -5.0134 1.8982 55 1 2.8886 -4.7603 1.4634 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_12102090_13915762.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:26:16 Heat of formation + Delta-G solvation = -78.100909 kcal Electronic energy + Delta-G solvation = -30483.175220 eV Core-core repulsion = 26643.576730 eV Total energy + Delta-G solvation = -3839.598490 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 352.210 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.94781 -40.11685 -38.09302 -37.15205 -36.84484 -34.36588 -33.47615 -31.70650 -30.69081 -29.33746 -29.13333 -27.87525 -27.48101 -26.95916 -25.46638 -24.64561 -23.38697 -22.50722 -21.00906 -20.40365 -18.94803 -18.48426 -17.67090 -17.54097 -16.57282 -16.50967 -16.24466 -15.91786 -15.77984 -15.68163 -15.47216 -15.11058 -14.85851 -14.84615 -14.75719 -14.49152 -14.21483 -14.05862 -13.98467 -13.65585 -13.55919 -13.45025 -13.36245 -13.20283 -12.98052 -12.93807 -12.89826 -12.48205 -12.43772 -12.40212 -12.20962 -12.01578 -11.92605 -11.80228 -11.70994 -11.64897 -11.26467 -11.21900 -10.92489 -10.80905 -10.47642 -10.42347 -10.31715 -10.06448 -9.16018 -0.02781 0.25685 1.16040 1.41510 1.42902 1.50087 1.77489 1.89949 2.10289 2.31139 2.51923 2.75198 3.33464 3.53014 3.69232 3.70398 3.76902 3.90526 3.91786 4.06705 4.09913 4.10825 4.11955 4.16661 4.23453 4.42797 4.45663 4.52644 4.58782 4.64568 4.70012 4.71707 4.72717 4.76695 4.78636 4.80399 4.81084 4.82605 4.87989 4.90804 4.98114 5.00441 5.07469 5.07721 5.09755 5.19670 5.21273 5.27366 5.32955 5.39350 5.41196 5.44399 5.51731 5.57733 5.64980 5.76091 6.05045 6.67870 6.89477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.380 4.380 3 C -0.141 4.141 4 C -0.138 4.138 5 Si 1.306 2.694 6 C -0.512 4.512 7 C -0.519 4.519 8 O -0.635 6.635 9 C 0.119 3.881 10 C -0.162 4.162 11 C -0.114 4.114 12 C 0.052 3.948 13 N -0.476 5.476 14 C 0.300 3.700 15 C -0.182 4.182 16 C -0.024 4.024 17 C -0.199 4.199 18 C -0.061 4.061 19 O -0.549 6.549 20 Si 0.969 3.031 21 H -0.261 1.261 22 H -0.269 1.269 23 H -0.254 1.254 24 C 0.108 3.892 25 N -0.541 5.541 26 C 0.073 3.927 27 H 0.063 0.937 28 H 0.048 0.952 29 H 0.053 0.947 30 H 0.061 0.939 31 H 0.051 0.949 32 H 0.066 0.934 33 H 0.052 0.948 34 H 0.049 0.951 35 H 0.058 0.942 36 H 0.077 0.923 37 H 0.079 0.921 38 H 0.074 0.926 39 H 0.064 0.936 40 H 0.079 0.921 41 H 0.068 0.932 42 H 0.074 0.926 43 H 0.094 0.906 44 H 0.070 0.930 45 H 0.100 0.900 46 H 0.083 0.917 47 H 0.042 0.958 48 H 0.105 0.895 49 H 0.160 0.840 50 H 0.161 0.839 51 H 0.131 0.869 52 H 0.388 0.612 53 H 0.154 0.846 54 H 0.045 0.955 55 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.366 0.292 4.276 4.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.423 4.423 3 C -0.198 4.198 4 C -0.195 4.195 5 Si 1.437 2.563 6 C -0.615 4.615 7 C -0.620 4.620 8 O -0.593 6.593 9 C 0.062 3.938 10 C -0.199 4.199 11 C -0.151 4.151 12 C -0.073 4.073 13 N -0.195 5.195 14 C 0.069 3.931 15 C -0.205 4.205 16 C -0.050 4.050 17 C -0.203 4.203 18 C -0.173 4.173 19 O -0.356 6.356 20 Si 0.794 3.206 21 H -0.186 1.186 22 H -0.193 1.193 23 H -0.178 1.178 24 C -0.049 4.049 25 N -0.255 5.255 26 C -0.055 4.055 27 H 0.082 0.918 28 H 0.067 0.933 29 H 0.072 0.928 30 H 0.080 0.920 31 H 0.070 0.930 32 H 0.085 0.915 33 H 0.071 0.929 34 H 0.068 0.932 35 H 0.077 0.923 36 H 0.096 0.904 37 H 0.098 0.902 38 H 0.093 0.907 39 H 0.083 0.917 40 H 0.099 0.901 41 H 0.087 0.913 42 H 0.091 0.909 43 H 0.112 0.888 44 H 0.088 0.912 45 H 0.118 0.882 46 H 0.102 0.898 47 H 0.061 0.939 48 H 0.123 0.877 49 H 0.178 0.822 50 H 0.179 0.821 51 H 0.149 0.851 52 H 0.237 0.763 53 H 0.171 0.829 54 H 0.064 0.936 55 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 0.063 0.693 3.031 3.110 hybrid contribution -0.492 -0.087 0.012 0.500 sum -0.429 0.606 3.043 3.132 Atomic orbital electron populations 1.21533 0.94104 1.01672 1.02001 1.25883 1.00507 1.03054 1.12874 1.21603 1.01205 0.94562 1.02398 1.21546 1.00898 0.99937 0.97104 0.76394 0.62307 0.52841 0.64791 1.27176 1.07083 1.09821 1.17391 1.27139 1.25726 1.04929 1.04232 1.85334 1.79389 1.46657 1.47954 1.21553 0.97296 0.90634 0.84364 1.22491 0.99437 1.02751 0.95269 1.21633 1.03790 0.92146 0.97549 1.22489 0.92075 0.99787 0.92916 1.59078 1.43970 1.05604 1.10828 1.20110 0.94076 0.89602 0.89344 1.21851 1.04075 0.93254 1.01284 1.21594 0.92341 0.95544 0.95487 1.21283 1.05504 0.97909 0.95558 1.24746 0.97129 0.86083 1.09319 1.86492 1.19828 1.55126 1.74144 0.85401 0.81060 0.79780 0.74357 1.18558 1.19349 1.17801 1.22581 0.94554 0.87908 0.99845 1.67577 1.19344 1.19589 1.19022 1.21876 1.00527 0.91731 0.91320 0.91778 0.93269 0.92781 0.91969 0.93025 0.91507 0.92855 0.93155 0.92331 0.90380 0.90206 0.90654 0.91654 0.90148 0.91283 0.90861 0.88760 0.91165 0.88183 0.89800 0.93913 0.87718 0.82224 0.82139 0.85125 0.76270 0.82903 0.93648 0.90725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.18 7.85 71.98 0.56 0.39 16 2 C -0.38 -0.29 0.53 -10.79 -0.01 -0.29 16 3 C -0.14 0.08 7.85 71.98 0.56 0.65 16 4 C -0.14 -0.34 7.85 71.98 0.56 0.22 16 5 Si 1.31 -1.14 8.07 68.60 0.55 -0.59 16 6 C -0.51 1.29 7.46 113.37 0.85 2.13 16 7 C -0.52 -0.22 8.56 113.37 0.97 0.75 16 8 O -0.63 -1.89 8.28 -148.98 -1.23 -3.13 16 9 C 0.12 0.19 2.31 30.65 0.07 0.26 16 10 C -0.16 0.31 5.38 30.70 0.17 0.47 16 11 C -0.11 0.55 6.09 30.67 0.19 0.73 16 12 C 0.05 -0.12 5.25 86.32 0.45 0.34 16 13 N -0.48 -1.30 4.68 -701.99 -3.28 -4.58 16 14 C 0.30 1.39 6.40 133.04 0.85 2.24 16 15 C -0.18 -0.01 9.18 22.50 0.21 0.19 16 16 C -0.02 0.02 9.83 22.44 0.22 0.25 16 17 C -0.20 -0.07 5.36 -19.76 -0.11 -0.17 16 18 C -0.06 0.15 2.82 71.24 0.20 0.35 16 19 O -0.55 0.82 12.84 -148.98 -1.91 -1.09 16 20 Si 0.97 -1.14 25.17 68.60 1.73 0.59 16 21 H -0.26 -0.25 7.11 99.48 0.71 0.46 16 22 H -0.27 -0.50 7.11 99.48 0.71 0.21 16 23 H -0.25 0.15 7.04 99.48 0.70 0.86 16 24 C 0.11 0.44 9.84 84.64 0.83 1.27 16 25 N -0.54 -4.12 8.68 -193.26 -1.68 -5.80 16 26 C 0.07 0.37 4.30 86.32 0.37 0.75 16 27 H 0.06 -0.05 7.79 -2.39 -0.02 -0.07 16 28 H 0.05 0.10 8.14 -2.38 -0.02 0.08 16 29 H 0.05 0.13 7.96 -2.39 -0.02 0.11 16 30 H 0.06 -0.11 7.79 -2.39 -0.02 -0.13 16 31 H 0.05 0.02 8.14 -2.39 -0.02 0.00 16 32 H 0.07 -0.18 7.79 -2.39 -0.02 -0.20 16 33 H 0.05 0.20 7.96 -2.39 -0.02 0.18 16 34 H 0.05 0.14 8.14 -2.38 -0.02 0.12 16 35 H 0.06 0.08 7.79 -2.39 -0.02 0.06 16 36 H 0.08 -0.29 6.42 -2.39 -0.02 -0.30 16 37 H 0.08 -0.27 7.79 -2.39 -0.02 -0.29 16 38 H 0.07 -0.18 7.79 -2.39 -0.02 -0.20 16 39 H 0.06 0.13 7.79 -2.39 -0.02 0.11 16 40 H 0.08 -0.08 7.79 -2.39 -0.02 -0.10 16 41 H 0.07 0.01 7.10 -2.38 -0.02 -0.01 16 42 H 0.07 0.00 6.15 -2.39 -0.01 -0.02 16 43 H 0.09 -0.37 4.86 -2.39 -0.01 -0.38 16 44 H 0.07 -0.03 8.14 -2.39 -0.02 -0.05 16 45 H 0.10 -0.80 8.14 -2.39 -0.02 -0.82 16 46 H 0.08 -0.46 8.14 -2.38 -0.02 -0.48 16 47 H 0.04 -0.02 8.14 -2.38 -0.02 -0.04 16 48 H 0.10 -0.60 6.68 -2.39 -0.02 -0.61 16 49 H 0.16 -0.74 7.16 -2.91 -0.02 -0.76 16 50 H 0.16 -0.82 8.06 -2.91 -0.02 -0.84 16 51 H 0.13 -0.62 7.96 -2.39 -0.02 -0.63 16 52 H 0.39 -2.81 8.70 -74.06 -0.64 -3.45 16 53 H 0.15 0.27 4.87 -2.91 -0.01 0.25 16 54 H 0.05 0.36 8.11 -2.39 -0.02 0.34 16 55 H 0.07 0.64 7.71 -2.39 -0.02 0.62 16 Total: 0.00 -12.15 414.87 2.09 -10.06 By element: Atomic # 1 Polarization: -6.94 SS G_CDS: 0.96 Total: -5.98 kcal Atomic # 6 Polarization: 3.56 SS G_CDS: 6.96 Total: 10.52 kcal Atomic # 7 Polarization: -5.42 SS G_CDS: -4.96 Total: -10.38 kcal Atomic # 8 Polarization: -1.07 SS G_CDS: -3.15 Total: -4.22 kcal Atomic # 14 Polarization: -2.28 SS G_CDS: 2.28 Total: 0.00 kcal Total: -12.15 2.09 -10.06 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_12102090_13915762.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.040 kcal (2) G-P(sol) polarization free energy of solvation -12.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -10.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds