Wall clock time and date at job start Mon Mar 8 2021 05:26:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.47269 * 2 1 4 4 C 1.52997 * 109.46969 * 239.99997 * 2 1 3 5 5 Si 1.86301 * 109.46866 * 120.00120 * 2 1 3 6 6 C 1.86306 * 109.47161 * 299.99645 * 5 2 1 7 7 C 1.86303 * 109.47022 * 179.97438 * 5 2 1 8 8 O 1.63097 * 109.47490 * 60.00041 * 5 2 1 9 9 C 1.42898 * 114.00372 * 180.02562 * 8 5 2 10 10 C 1.53113 * 109.53618 * 150.17703 * 9 8 5 11 11 C 1.53125 * 109.15962 * 177.61193 * 10 9 8 12 12 C 1.53033 * 109.28145 * 302.34460 * 11 10 9 13 13 N 1.46855 * 109.51989 * 59.17347 * 12 11 10 14 14 C 1.38616 * 110.99445 * 174.16154 * 13 12 11 15 15 N 1.29686 * 124.94711 * 124.19238 * 14 13 12 16 16 C 1.32115 * 116.86551 * 180.02562 * 15 14 13 17 17 C 1.33323 * 114.58482 * 359.97438 * 16 15 14 18 18 C 1.50696 * 125.95935 * 180.02562 * 17 16 15 19 19 O 1.42903 * 109.47389 * 120.02057 * 18 17 16 20 20 Si 1.86301 * 109.46719 * 0.02562 * 18 17 16 21 21 H 1.48506 * 109.47302 * 179.97438 * 20 18 17 22 22 H 1.48503 * 109.47334 * 60.00029 * 20 18 17 23 23 H 1.48500 * 109.47376 * 300.00026 * 20 18 17 24 24 S 1.70967 * 124.95027 * 304.54145 * 14 13 12 25 25 C 1.46843 * 111.19971 * 298.25998 * 13 12 11 26 26 H 1.09001 * 109.46631 * 299.99859 * 1 2 3 27 27 H 1.08995 * 109.47024 * 59.99742 * 1 2 3 28 28 H 1.08994 * 109.47352 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46692 * 179.97438 * 3 2 1 30 30 H 1.08992 * 109.46818 * 300.00215 * 3 2 1 31 31 H 1.09003 * 109.46712 * 59.99877 * 3 2 1 32 32 H 1.09005 * 109.47292 * 300.00344 * 4 2 1 33 33 H 1.09002 * 109.47412 * 60.00263 * 4 2 1 34 34 H 1.09003 * 109.47255 * 180.02562 * 4 2 1 35 35 H 1.09002 * 109.46630 * 180.02562 * 6 5 2 36 36 H 1.08994 * 109.46994 * 300.00308 * 6 5 2 37 37 H 1.08994 * 109.46678 * 60.00409 * 6 5 2 38 38 H 1.09003 * 109.47423 * 300.00287 * 7 5 2 39 39 H 1.09004 * 109.47247 * 59.99652 * 7 5 2 40 40 H 1.08995 * 109.47180 * 180.02562 * 7 5 2 41 41 H 1.08998 * 109.50421 * 30.07303 * 9 8 5 42 42 H 1.08997 * 109.52180 * 297.51607 * 10 9 8 43 43 H 1.09002 * 109.52679 * 57.70889 * 10 9 8 44 44 H 1.09008 * 109.49967 * 62.28798 * 11 10 9 45 45 H 1.08996 * 109.50371 * 182.40181 * 11 10 9 46 46 H 1.09004 * 109.46317 * 299.16663 * 12 11 10 47 47 H 1.08996 * 109.46708 * 179.19156 * 12 11 10 48 48 H 1.08004 * 122.70742 * 180.02562 * 16 15 14 49 49 H 1.09001 * 109.47332 * 240.02694 * 18 17 16 50 50 H 0.96698 * 113.99836 * 180.02562 * 19 18 17 51 51 H 1.09007 * 109.45669 * 181.75574 * 25 13 12 52 52 H 1.08995 * 109.46210 * 301.73635 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 14 2.1510 -0.8783 1.5211 6 6 1.5300 0.0000 3.0423 7 6 4.0140 -0.8790 1.5208 8 8 1.6073 -2.4160 1.5212 9 6 2.0285 -3.1814 2.6520 10 6 0.9722 -4.2419 2.9746 11 6 1.4590 -5.0950 4.1493 12 6 2.8042 -5.7298 3.7895 13 7 3.7804 -4.6743 3.4900 14 6 5.0432 -5.2088 3.2874 15 7 5.7635 -5.0304 2.2239 16 6 6.9473 -5.6164 2.1993 17 6 7.2401 -6.3213 3.2925 18 6 8.5140 -7.0886 3.5358 19 8 9.1649 -6.5746 4.6996 20 14 9.6400 -6.9056 2.0629 21 1 10.8958 -7.6612 2.3028 22 1 9.9584 -5.4696 1.8585 23 1 8.9638 -7.4396 0.8534 24 16 5.8746 -6.2061 4.3997 25 6 3.3572 -3.8716 2.3355 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 3.1301 1.4424 0.0005 30 1 1.6767 1.9563 -0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.6766 -1.7489 -1.2493 33 1 1.6767 -0.2074 -2.1392 34 1 3.1300 -0.7217 -1.2490 35 1 1.8937 -0.5137 3.9323 36 1 1.8934 1.0276 3.0423 37 1 0.4401 0.0000 3.0423 38 1 4.3770 -1.3930 0.6308 39 1 4.3778 0.1486 1.5205 40 1 4.3773 -1.3932 2.4105 41 1 2.1563 -2.5221 3.5105 42 1 0.0355 -3.7532 3.2428 43 1 0.8160 -4.8774 2.1029 44 1 1.5778 -4.4658 5.0314 45 1 0.7305 -5.8789 4.3562 46 1 2.6817 -6.3697 2.9155 47 1 3.1605 -6.3264 4.6292 48 1 7.6237 -5.5306 1.3617 49 1 8.2804 -8.1426 3.6858 50 1 9.9940 -7.0224 4.9165 51 1 4.1151 -3.1187 2.1193 52 1 3.2319 -4.5203 1.4686 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_12102090_15704118.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:26:29 Heat of formation + Delta-G solvation = -77.872920 kcal Electronic energy + Delta-G solvation = -29123.967332 eV Core-core repulsion = 25373.530975 eV Total energy + Delta-G solvation = -3750.436357 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 358.166 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.45294 -39.96147 -38.00540 -37.30994 -36.82122 -34.28340 -31.59986 -31.08253 -29.28833 -29.08404 -27.86786 -27.47513 -27.24634 -25.53985 -24.16427 -23.91302 -21.41808 -20.47887 -20.39104 -19.33225 -18.64874 -17.94077 -17.42030 -16.52774 -16.18119 -16.08094 -16.04022 -15.83253 -15.74182 -15.18297 -14.88846 -14.81668 -14.79929 -14.70708 -14.48380 -14.11743 -14.06414 -13.84953 -13.59508 -13.37165 -13.16028 -13.11183 -12.91542 -12.88475 -12.85861 -12.45050 -12.39573 -12.25083 -12.19851 -12.09478 -12.06715 -11.99955 -11.69259 -11.64264 -11.43448 -11.10859 -10.97568 -10.64639 -10.45545 -10.34483 -10.11673 -10.04769 -9.13211 -0.29864 0.08561 0.66465 1.24883 1.35544 1.40842 1.43794 1.75054 1.76568 1.85957 2.06563 2.40967 2.53660 3.23782 3.46106 3.64810 3.72953 3.78906 3.84546 3.98379 4.10537 4.13679 4.14195 4.15156 4.31369 4.40251 4.49598 4.54003 4.59085 4.63460 4.71372 4.72540 4.75660 4.78649 4.82026 4.83411 4.87296 4.88039 4.94351 5.01489 5.05977 5.11774 5.12128 5.14343 5.22790 5.34234 5.38381 5.44357 5.48044 5.56980 5.61223 5.68463 5.77161 6.44973 6.74690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.373 4.373 3 C -0.137 4.137 4 C -0.134 4.134 5 Si 1.282 2.718 6 C -0.510 4.510 7 C -0.513 4.513 8 O -0.615 6.615 9 C 0.120 3.880 10 C -0.124 4.124 11 C -0.117 4.117 12 C 0.049 3.951 13 N -0.444 5.444 14 C 0.217 3.783 15 N -0.511 5.511 16 C 0.065 3.935 17 C -0.237 4.237 18 C -0.042 4.042 19 O -0.545 6.545 20 Si 0.952 3.048 21 H -0.249 1.249 22 H -0.243 1.243 23 H -0.245 1.245 24 S 0.184 5.816 25 C 0.029 3.971 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.059 0.941 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.059 0.941 33 H 0.053 0.947 34 H 0.054 0.946 35 H 0.067 0.933 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.074 0.926 39 H 0.073 0.927 40 H 0.070 0.930 41 H 0.070 0.930 42 H 0.079 0.921 43 H 0.076 0.924 44 H 0.080 0.920 45 H 0.087 0.913 46 H 0.058 0.942 47 H 0.087 0.913 48 H 0.172 0.828 49 H 0.080 0.920 50 H 0.384 0.616 51 H 0.105 0.895 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.112 -3.059 1.540 3.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.417 4.417 3 C -0.194 4.194 4 C -0.191 4.191 5 Si 1.413 2.587 6 C -0.612 4.612 7 C -0.614 4.614 8 O -0.573 6.573 9 C 0.062 3.938 10 C -0.162 4.162 11 C -0.155 4.155 12 C -0.078 4.078 13 N -0.166 5.166 14 C -0.151 4.151 15 N -0.231 5.231 16 C -0.088 4.088 17 C -0.360 4.360 18 C -0.154 4.154 19 O -0.352 6.352 20 Si 0.772 3.228 21 H -0.172 1.172 22 H -0.166 1.166 23 H -0.169 1.169 24 S 0.438 5.562 25 C -0.100 4.100 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.086 0.914 36 H 0.093 0.907 37 H 0.092 0.908 38 H 0.093 0.907 39 H 0.092 0.908 40 H 0.089 0.911 41 H 0.087 0.913 42 H 0.098 0.902 43 H 0.095 0.905 44 H 0.098 0.902 45 H 0.106 0.894 46 H 0.076 0.924 47 H 0.106 0.894 48 H 0.189 0.811 49 H 0.098 0.902 50 H 0.232 0.768 51 H 0.123 0.877 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -0.769 -2.497 1.665 3.098 hybrid contribution 1.072 -0.111 -0.828 1.359 sum 0.302 -2.608 0.838 2.756 Atomic orbital electron populations 1.21512 0.93822 1.01995 1.01767 1.25762 1.00654 1.02612 1.12671 1.21558 1.00825 0.94907 1.02122 1.21511 1.00671 1.00220 0.96713 0.76839 0.63205 0.53598 0.65033 1.27022 1.06945 1.09454 1.17771 1.27230 1.24822 1.04678 1.04712 1.85405 1.78347 1.45888 1.47706 1.21499 0.92455 0.93189 0.86611 1.21789 0.98592 0.97086 0.98720 1.21624 0.94813 1.00115 0.98973 1.22544 0.91867 0.91604 1.01762 1.58947 0.98291 1.21274 1.38094 1.25093 0.97595 0.99256 0.93154 1.66839 1.07026 1.26064 1.23155 1.21372 0.93711 0.95090 0.98616 1.25127 1.01032 1.10735 0.99080 1.24047 0.94470 0.97800 0.99113 1.86525 1.40968 1.62551 1.45107 0.85680 0.78478 0.82397 0.76263 1.17224 1.16621 1.16874 1.83950 1.07308 1.45336 1.19565 1.22945 0.97971 0.98463 0.90609 0.92719 0.92797 0.92154 0.92496 0.92488 0.92530 0.92171 0.92808 0.92671 0.91352 0.90684 0.90848 0.90717 0.90789 0.91089 0.91257 0.90187 0.90506 0.90178 0.89443 0.92396 0.89423 0.81114 0.90233 0.76796 0.87668 0.91453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.06 7.85 37.16 0.29 0.23 16 2 C -0.37 -0.12 0.53 -90.62 -0.05 -0.17 16 3 C -0.14 0.00 7.85 37.16 0.29 0.29 16 4 C -0.13 -0.10 7.85 37.16 0.29 0.19 16 5 Si 1.28 -0.15 8.07 -169.99 -1.37 -1.52 16 6 C -0.51 -0.02 8.56 101.05 0.87 0.84 16 7 C -0.51 -0.44 7.42 101.05 0.75 0.31 16 8 O -0.62 -0.57 8.29 -35.23 -0.29 -0.86 16 9 C 0.12 0.05 2.31 -26.65 -0.06 -0.01 16 10 C -0.12 0.11 5.66 -26.61 -0.15 -0.04 16 11 C -0.12 0.24 6.09 -26.65 -0.16 0.08 16 12 C 0.05 -0.04 5.33 -3.83 -0.02 -0.06 16 13 N -0.44 -0.66 4.72 -175.41 -0.83 -1.49 16 14 C 0.22 0.62 6.74 -87.68 -0.59 0.03 16 15 N -0.51 -2.06 9.45 -15.21 -0.14 -2.20 16 16 C 0.06 0.18 10.07 -19.15 -0.19 -0.01 16 17 C -0.24 -0.46 5.96 -36.03 -0.21 -0.67 16 18 C -0.04 0.02 3.07 36.00 0.11 0.13 16 19 O -0.54 0.03 12.86 -35.23 -0.45 -0.42 16 20 Si 0.95 -1.01 25.77 -169.99 -4.38 -5.39 16 21 H -0.25 0.32 7.11 56.52 0.40 0.72 16 22 H -0.24 -0.15 7.11 56.52 0.40 0.26 16 23 H -0.25 0.13 7.11 56.52 0.40 0.53 16 24 S 0.18 0.30 22.24 -107.50 -2.39 -2.09 16 25 C 0.03 0.05 4.22 -3.84 -0.02 0.03 16 26 H 0.05 -0.01 7.79 -51.93 -0.40 -0.41 16 27 H 0.05 0.03 8.14 -51.93 -0.42 -0.39 16 28 H 0.06 0.03 7.96 -51.93 -0.41 -0.38 16 29 H 0.06 -0.03 7.79 -51.93 -0.40 -0.43 16 30 H 0.06 0.02 8.14 -51.93 -0.42 -0.41 16 31 H 0.06 -0.04 7.79 -51.93 -0.40 -0.44 16 32 H 0.06 0.06 7.97 -51.93 -0.41 -0.36 16 33 H 0.05 0.05 8.14 -51.93 -0.42 -0.38 16 34 H 0.05 0.02 7.79 -51.93 -0.40 -0.38 16 35 H 0.07 0.00 7.10 -51.93 -0.37 -0.37 16 36 H 0.07 -0.02 7.79 -51.93 -0.40 -0.42 16 37 H 0.07 0.00 7.79 -51.93 -0.40 -0.41 16 38 H 0.07 0.10 7.79 -51.93 -0.40 -0.31 16 39 H 0.07 0.03 7.79 -51.93 -0.40 -0.38 16 40 H 0.07 0.10 6.45 -51.93 -0.33 -0.23 16 41 H 0.07 -0.02 6.15 -51.93 -0.32 -0.34 16 42 H 0.08 -0.12 8.14 -51.93 -0.42 -0.54 16 43 H 0.08 -0.04 8.14 -51.93 -0.42 -0.46 16 44 H 0.08 -0.17 8.14 -51.92 -0.42 -0.59 16 45 H 0.09 -0.30 8.14 -51.93 -0.42 -0.72 16 46 H 0.06 -0.04 8.14 -51.93 -0.42 -0.46 16 47 H 0.09 -0.15 7.32 -51.93 -0.38 -0.53 16 48 H 0.17 0.17 5.85 -52.48 -0.31 -0.14 16 49 H 0.08 -0.19 7.96 -51.93 -0.41 -0.61 16 50 H 0.38 -1.81 8.74 45.56 0.40 -1.42 16 51 H 0.11 0.26 4.55 -51.92 -0.24 0.03 16 52 H 0.07 0.17 8.14 -51.93 -0.42 -0.26 16 LS Contribution 407.84 15.07 6.15 6.15 Total: 0.00 -5.69 407.84 -11.19 -16.88 By element: Atomic # 1 Polarization: -1.60 SS G_CDS: -8.63 Total: -10.22 kcal Atomic # 6 Polarization: 0.02 SS G_CDS: 1.14 Total: 1.16 kcal Atomic # 7 Polarization: -2.72 SS G_CDS: -0.97 Total: -3.69 kcal Atomic # 8 Polarization: -0.54 SS G_CDS: -0.74 Total: -1.28 kcal Atomic # 14 Polarization: -1.16 SS G_CDS: -5.75 Total: -6.91 kcal Atomic # 16 Polarization: 0.30 SS G_CDS: -2.39 Total: -2.09 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -5.69 -11.19 -16.88 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_12102090_15704118.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.989 kcal (2) G-P(sol) polarization free energy of solvation -5.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds