Wall clock time and date at job start Mon Mar 8 2021 05:26:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.47269 * 2 1 4 4 C 1.52997 * 109.46969 * 239.99997 * 2 1 3 5 5 Si 1.86301 * 109.46866 * 120.00120 * 2 1 3 6 6 C 1.86306 * 109.47161 * 299.99645 * 5 2 1 7 7 C 1.86303 * 109.47022 * 179.97438 * 5 2 1 8 8 O 1.63097 * 109.47490 * 60.00041 * 5 2 1 9 9 C 1.42898 * 114.00372 * 180.02562 * 8 5 2 10 10 C 1.53113 * 109.53618 * 150.17703 * 9 8 5 11 11 C 1.53125 * 109.15962 * 177.61193 * 10 9 8 12 12 C 1.53033 * 109.28145 * 302.34460 * 11 10 9 13 13 N 1.46855 * 109.51989 * 59.17347 * 12 11 10 14 14 C 1.38616 * 110.99445 * 174.16154 * 13 12 11 15 15 N 1.29686 * 124.94711 * 124.19238 * 14 13 12 16 16 C 1.32115 * 116.86551 * 180.02562 * 15 14 13 17 17 C 1.33323 * 114.58482 * 359.97438 * 16 15 14 18 18 C 1.50696 * 125.95935 * 180.02562 * 17 16 15 19 19 O 1.42903 * 109.47389 * 120.02057 * 18 17 16 20 20 Si 1.86301 * 109.46719 * 0.02562 * 18 17 16 21 21 H 1.48506 * 109.47302 * 179.97438 * 20 18 17 22 22 H 1.48503 * 109.47334 * 60.00029 * 20 18 17 23 23 H 1.48500 * 109.47376 * 300.00026 * 20 18 17 24 24 S 1.70967 * 124.95027 * 304.54145 * 14 13 12 25 25 C 1.46843 * 111.19971 * 298.25998 * 13 12 11 26 26 H 1.09001 * 109.46631 * 299.99859 * 1 2 3 27 27 H 1.08995 * 109.47024 * 59.99742 * 1 2 3 28 28 H 1.08994 * 109.47352 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46692 * 179.97438 * 3 2 1 30 30 H 1.08992 * 109.46818 * 300.00215 * 3 2 1 31 31 H 1.09003 * 109.46712 * 59.99877 * 3 2 1 32 32 H 1.09005 * 109.47292 * 300.00344 * 4 2 1 33 33 H 1.09002 * 109.47412 * 60.00263 * 4 2 1 34 34 H 1.09003 * 109.47255 * 180.02562 * 4 2 1 35 35 H 1.09002 * 109.46630 * 180.02562 * 6 5 2 36 36 H 1.08994 * 109.46994 * 300.00308 * 6 5 2 37 37 H 1.08994 * 109.46678 * 60.00409 * 6 5 2 38 38 H 1.09003 * 109.47423 * 300.00287 * 7 5 2 39 39 H 1.09004 * 109.47247 * 59.99652 * 7 5 2 40 40 H 1.08995 * 109.47180 * 180.02562 * 7 5 2 41 41 H 1.08998 * 109.50421 * 30.07303 * 9 8 5 42 42 H 1.08997 * 109.52180 * 297.51607 * 10 9 8 43 43 H 1.09002 * 109.52679 * 57.70889 * 10 9 8 44 44 H 1.09008 * 109.49967 * 62.28798 * 11 10 9 45 45 H 1.08996 * 109.50371 * 182.40181 * 11 10 9 46 46 H 1.09004 * 109.46317 * 299.16663 * 12 11 10 47 47 H 1.08996 * 109.46708 * 179.19156 * 12 11 10 48 48 H 1.08004 * 122.70742 * 180.02562 * 16 15 14 49 49 H 1.09001 * 109.47332 * 240.02694 * 18 17 16 50 50 H 0.96698 * 113.99836 * 180.02562 * 19 18 17 51 51 H 1.09007 * 109.45669 * 181.75574 * 25 13 12 52 52 H 1.08995 * 109.46210 * 301.73635 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 14 2.1510 -0.8783 1.5211 6 6 1.5300 0.0000 3.0423 7 6 4.0140 -0.8790 1.5208 8 8 1.6073 -2.4160 1.5212 9 6 2.0285 -3.1814 2.6520 10 6 0.9722 -4.2419 2.9746 11 6 1.4590 -5.0950 4.1493 12 6 2.8042 -5.7298 3.7895 13 7 3.7804 -4.6743 3.4900 14 6 5.0432 -5.2088 3.2874 15 7 5.7635 -5.0304 2.2239 16 6 6.9473 -5.6164 2.1993 17 6 7.2401 -6.3213 3.2925 18 6 8.5140 -7.0886 3.5358 19 8 9.1649 -6.5746 4.6996 20 14 9.6400 -6.9056 2.0629 21 1 10.8958 -7.6612 2.3028 22 1 9.9584 -5.4696 1.8585 23 1 8.9638 -7.4396 0.8534 24 16 5.8746 -6.2061 4.3997 25 6 3.3572 -3.8716 2.3355 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 3.1301 1.4424 0.0005 30 1 1.6767 1.9563 -0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.6766 -1.7489 -1.2493 33 1 1.6767 -0.2074 -2.1392 34 1 3.1300 -0.7217 -1.2490 35 1 1.8937 -0.5137 3.9323 36 1 1.8934 1.0276 3.0423 37 1 0.4401 0.0000 3.0423 38 1 4.3770 -1.3930 0.6308 39 1 4.3778 0.1486 1.5205 40 1 4.3773 -1.3932 2.4105 41 1 2.1563 -2.5221 3.5105 42 1 0.0355 -3.7532 3.2428 43 1 0.8160 -4.8774 2.1029 44 1 1.5778 -4.4658 5.0314 45 1 0.7305 -5.8789 4.3562 46 1 2.6817 -6.3697 2.9155 47 1 3.1605 -6.3264 4.6292 48 1 7.6237 -5.5306 1.3617 49 1 8.2804 -8.1426 3.6858 50 1 9.9940 -7.0224 4.9165 51 1 4.1151 -3.1187 2.1193 52 1 3.2319 -4.5203 1.4686 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_12102090_15704118.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:26:28 Heat of formation + Delta-G solvation = -71.658954 kcal Electronic energy + Delta-G solvation = -29123.697874 eV Core-core repulsion = 25373.530975 eV Total energy + Delta-G solvation = -3750.166899 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 358.166 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.54503 -40.02809 -37.97921 -37.33270 -36.85216 -34.25692 -31.66134 -31.11506 -29.31092 -29.12999 -27.88436 -27.52315 -27.30153 -25.57962 -24.20243 -23.92300 -21.41535 -20.56134 -20.42395 -19.42972 -18.59637 -17.97695 -17.46011 -16.57549 -16.24483 -16.13748 -16.05462 -15.83085 -15.70712 -15.22079 -14.91638 -14.85159 -14.82989 -14.73981 -14.52074 -14.10561 -14.09141 -13.85320 -13.62503 -13.37432 -13.17022 -13.11726 -12.96602 -12.91650 -12.89967 -12.49455 -12.41888 -12.25106 -12.12888 -12.06967 -12.03540 -11.93855 -11.71551 -11.67064 -11.47215 -11.12697 -11.03795 -10.78803 -10.46915 -10.39343 -10.19633 -10.08222 -9.24146 -0.42789 -0.01578 0.55719 1.27873 1.39898 1.43948 1.49797 1.60600 1.75262 1.91954 2.05284 2.36212 2.49527 3.30740 3.41482 3.64635 3.73497 3.85831 3.87709 3.99862 4.10216 4.10882 4.14043 4.20487 4.37074 4.40193 4.45793 4.50768 4.56671 4.65273 4.67777 4.68427 4.74345 4.76955 4.79962 4.81157 4.82706 4.85658 4.98385 4.99147 5.07645 5.08427 5.13017 5.17195 5.22709 5.33027 5.39280 5.40695 5.43681 5.53100 5.59725 5.61367 5.70395 6.60317 6.76619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.377 4.377 3 C -0.142 4.142 4 C -0.137 4.137 5 Si 1.307 2.693 6 C -0.513 4.513 7 C -0.520 4.520 8 O -0.625 6.625 9 C 0.117 3.883 10 C -0.124 4.124 11 C -0.112 4.112 12 C 0.045 3.955 13 N -0.446 5.446 14 C 0.204 3.796 15 N -0.538 5.538 16 C 0.045 3.955 17 C -0.243 4.243 18 C -0.044 4.044 19 O -0.563 6.563 20 Si 0.987 3.013 21 H -0.239 1.239 22 H -0.273 1.273 23 H -0.255 1.255 24 S 0.204 5.796 25 C 0.032 3.968 26 H 0.062 0.938 27 H 0.050 0.950 28 H 0.057 0.943 29 H 0.059 0.941 30 H 0.053 0.947 31 H 0.065 0.935 32 H 0.055 0.945 33 H 0.051 0.949 34 H 0.055 0.945 35 H 0.069 0.931 36 H 0.078 0.922 37 H 0.076 0.924 38 H 0.064 0.936 39 H 0.077 0.923 40 H 0.062 0.938 41 H 0.077 0.923 42 H 0.089 0.911 43 H 0.071 0.929 44 H 0.084 0.916 45 H 0.107 0.893 46 H 0.055 0.945 47 H 0.098 0.902 48 H 0.179 0.821 49 H 0.104 0.896 50 H 0.404 0.596 51 H 0.092 0.908 52 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.460 -3.663 2.730 4.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.420 4.420 3 C -0.199 4.199 4 C -0.194 4.194 5 Si 1.437 2.563 6 C -0.615 4.615 7 C -0.620 4.620 8 O -0.583 6.583 9 C 0.060 3.940 10 C -0.162 4.162 11 C -0.149 4.149 12 C -0.082 4.082 13 N -0.168 5.168 14 C -0.164 4.164 15 N -0.259 5.259 16 C -0.107 4.107 17 C -0.366 4.366 18 C -0.156 4.156 19 O -0.373 6.373 20 Si 0.808 3.192 21 H -0.162 1.162 22 H -0.198 1.198 23 H -0.179 1.179 24 S 0.458 5.542 25 C -0.097 4.097 26 H 0.081 0.919 27 H 0.069 0.931 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.072 0.928 31 H 0.084 0.916 32 H 0.074 0.926 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.088 0.912 36 H 0.097 0.903 37 H 0.095 0.905 38 H 0.084 0.916 39 H 0.096 0.904 40 H 0.081 0.919 41 H 0.095 0.905 42 H 0.108 0.892 43 H 0.090 0.910 44 H 0.103 0.897 45 H 0.126 0.874 46 H 0.073 0.927 47 H 0.116 0.884 48 H 0.196 0.804 49 H 0.121 0.879 50 H 0.255 0.745 51 H 0.110 0.890 52 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.092 -3.125 2.861 4.376 hybrid contribution 1.229 0.079 -1.207 1.724 sum 0.137 -3.047 1.655 3.470 Atomic orbital electron populations 1.21542 0.93796 1.01957 1.02062 1.25820 1.00723 1.02885 1.12582 1.21611 1.01116 0.94697 1.02446 1.21541 1.00764 1.00070 0.97055 0.76408 0.61878 0.53209 0.64795 1.27027 1.07217 1.09707 1.17577 1.27362 1.26191 1.04622 1.03853 1.85408 1.78349 1.46394 1.48157 1.21608 0.92207 0.93632 0.86603 1.21820 0.98531 0.96805 0.99043 1.21646 0.94320 1.00500 0.98483 1.22695 0.92113 0.91313 1.02031 1.59050 0.98324 1.21870 1.37581 1.25362 0.98121 0.99581 0.93372 1.66828 1.07808 1.27051 1.24218 1.21572 0.93804 0.95762 0.99525 1.25519 1.02012 1.10273 0.98757 1.24159 0.93508 0.98580 0.99332 1.86469 1.42352 1.63437 1.45076 0.85198 0.78318 0.80301 0.75407 1.16188 1.19755 1.17936 1.83762 1.06852 1.44673 1.18945 1.22865 0.98395 0.98008 0.90396 0.91859 0.93095 0.92361 0.92182 0.92796 0.91613 0.92580 0.92980 0.92609 0.91174 0.90251 0.90462 0.91644 0.90384 0.91899 0.90491 0.89221 0.91043 0.89701 0.87437 0.92674 0.88373 0.80440 0.87858 0.74500 0.88989 0.92913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.14 7.85 71.98 0.56 0.42 16 2 C -0.38 -0.43 0.53 -10.79 -0.01 -0.44 16 3 C -0.14 -0.04 7.85 71.98 0.56 0.53 16 4 C -0.14 -0.36 7.85 71.98 0.56 0.21 16 5 Si 1.31 0.44 8.07 68.60 0.55 1.00 16 6 C -0.51 0.17 8.56 113.37 0.97 1.14 16 7 C -0.52 -1.64 7.42 113.37 0.84 -0.80 16 8 O -0.62 -1.60 8.29 -148.98 -1.23 -2.84 16 9 C 0.12 0.16 2.31 30.64 0.07 0.23 16 10 C -0.12 0.25 5.66 30.67 0.17 0.42 16 11 C -0.11 0.54 6.09 30.65 0.19 0.73 16 12 C 0.04 -0.06 5.33 86.32 0.46 0.40 16 13 N -0.45 -1.73 4.72 -708.88 -3.35 -5.07 16 14 C 0.20 1.40 6.74 179.32 1.21 2.60 16 15 N -0.54 -5.33 9.45 -202.02 -1.91 -7.24 16 16 C 0.05 0.32 10.07 83.54 0.84 1.16 16 17 C -0.24 -1.06 5.96 24.57 0.15 -0.91 16 18 C -0.04 0.06 3.07 71.23 0.22 0.28 16 19 O -0.56 0.42 12.86 -148.98 -1.92 -1.49 16 20 Si 0.99 -2.00 25.77 68.60 1.77 -0.23 16 21 H -0.24 0.88 7.11 99.48 0.71 1.59 16 22 H -0.27 -0.73 7.11 99.48 0.71 -0.02 16 23 H -0.26 0.15 7.11 99.48 0.71 0.86 16 24 S 0.20 0.72 22.24 -56.49 -1.26 -0.53 16 25 C 0.03 0.16 4.22 86.33 0.36 0.52 16 26 H 0.06 -0.05 7.79 -2.39 -0.02 -0.07 16 27 H 0.05 0.08 8.14 -2.39 -0.02 0.06 16 28 H 0.06 0.08 7.96 -2.39 -0.02 0.06 16 29 H 0.06 -0.03 7.79 -2.39 -0.02 -0.05 16 30 H 0.05 0.05 8.14 -2.39 -0.02 0.03 16 31 H 0.06 -0.11 7.79 -2.39 -0.02 -0.12 16 32 H 0.06 0.18 7.97 -2.38 -0.02 0.16 16 33 H 0.05 0.14 8.14 -2.39 -0.02 0.12 16 34 H 0.05 0.12 7.79 -2.39 -0.02 0.10 16 35 H 0.07 -0.04 7.10 -2.39 -0.02 -0.05 16 36 H 0.08 -0.08 7.79 -2.39 -0.02 -0.10 16 37 H 0.08 -0.07 7.79 -2.39 -0.02 -0.08 16 38 H 0.06 0.31 7.79 -2.39 -0.02 0.29 16 39 H 0.08 0.14 7.79 -2.39 -0.02 0.12 16 40 H 0.06 0.30 6.45 -2.39 -0.02 0.28 16 41 H 0.08 -0.03 6.15 -2.39 -0.01 -0.04 16 42 H 0.09 -0.34 8.14 -2.39 -0.02 -0.36 16 43 H 0.07 -0.06 8.14 -2.39 -0.02 -0.08 16 44 H 0.08 -0.45 8.14 -2.38 -0.02 -0.47 16 45 H 0.11 -0.92 8.14 -2.39 -0.02 -0.94 16 46 H 0.05 -0.05 8.14 -2.39 -0.02 -0.06 16 47 H 0.10 -0.37 7.32 -2.39 -0.02 -0.38 16 48 H 0.18 0.69 5.85 -2.91 -0.02 0.67 16 49 H 0.10 -0.64 7.96 -2.39 -0.02 -0.66 16 50 H 0.40 -4.24 8.74 -74.06 -0.65 -4.88 16 51 H 0.09 0.67 4.55 -2.38 -0.01 0.65 16 52 H 0.05 0.38 8.14 -2.39 -0.02 0.36 16 Total: 0.00 -13.76 407.84 0.83 -12.93 By element: Atomic # 1 Polarization: -4.01 SS G_CDS: 1.00 Total: -3.01 kcal Atomic # 6 Polarization: -0.68 SS G_CDS: 7.17 Total: 6.49 kcal Atomic # 7 Polarization: -7.05 SS G_CDS: -5.26 Total: -12.31 kcal Atomic # 8 Polarization: -1.18 SS G_CDS: -3.15 Total: -4.33 kcal Atomic # 14 Polarization: -1.56 SS G_CDS: 2.32 Total: 0.76 kcal Atomic # 16 Polarization: 0.72 SS G_CDS: -1.26 Total: -0.53 kcal Total: -13.76 0.83 -12.93 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_12102090_15704118.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.732 kcal (2) G-P(sol) polarization free energy of solvation -13.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -12.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds