Wall clock time and date at job start Mon Mar 8 2021 05:28:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47157 * 2 1 4 4 C 1.52998 * 109.46996 * 239.99985 * 2 1 3 5 5 Si 1.86306 * 109.47338 * 120.00170 * 2 1 3 6 6 C 1.86303 * 109.46697 * 300.00081 * 5 2 1 7 7 C 1.86292 * 109.47135 * 179.97438 * 5 2 1 8 8 O 1.63100 * 109.46798 * 59.99625 * 5 2 1 9 9 C 1.42900 * 113.99794 * 179.97438 * 8 5 2 10 10 C 1.53120 * 109.53205 * 90.17972 * 9 8 5 11 11 C 1.53125 * 109.16016 * 177.61347 * 10 9 8 12 12 C 1.53027 * 109.28002 * 302.34809 * 11 10 9 13 13 N 1.46850 * 109.52633 * 59.17489 * 12 11 10 14 14 C 1.39154 * 111.00187 * 174.16178 * 13 12 11 15 15 C 1.39297 * 119.71432 * 304.20763 * 14 13 12 16 16 F 1.35104 * 120.47466 * 0.02562 * 15 14 13 17 17 C 1.38483 * 119.05752 * 180.27585 * 15 14 13 18 18 C 1.38868 * 118.48305 * 359.44048 * 17 15 14 19 19 C 1.50693 * 120.32965 * 180.30460 * 18 17 15 20 20 O 1.42897 * 109.47518 * 300.26174 * 19 18 17 21 21 Si 1.86306 * 109.47179 * 180.25798 * 19 18 17 22 22 H 1.48497 * 109.46649 * 60.00519 * 21 19 18 23 23 H 1.48506 * 109.46895 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47352 * 300.00297 * 21 19 18 25 25 C 1.38029 * 119.34445 * 0.56797 * 18 17 15 26 26 N 1.31985 * 120.89733 * 359.69475 * 25 18 17 27 27 C 1.46839 * 111.19879 * 298.26255 * 13 12 11 28 28 H 1.09004 * 109.47379 * 299.99985 * 1 2 3 29 29 H 1.09002 * 109.47097 * 59.99538 * 1 2 3 30 30 H 1.08994 * 109.47371 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.46962 * 179.97438 * 3 2 1 32 32 H 1.08995 * 109.47190 * 300.00009 * 3 2 1 33 33 H 1.08997 * 109.46957 * 60.00448 * 3 2 1 34 34 H 1.09002 * 109.47244 * 299.99934 * 4 2 1 35 35 H 1.09002 * 109.46808 * 60.00300 * 4 2 1 36 36 H 1.09003 * 109.47213 * 179.97438 * 4 2 1 37 37 H 1.09002 * 109.46579 * 179.97438 * 6 5 2 38 38 H 1.08994 * 109.47132 * 299.99476 * 6 5 2 39 39 H 1.08994 * 109.47490 * 60.00042 * 6 5 2 40 40 H 1.09000 * 109.47052 * 299.99641 * 7 5 2 41 41 H 1.08994 * 109.47434 * 60.00071 * 7 5 2 42 42 H 1.09002 * 109.46895 * 180.02562 * 7 5 2 43 43 H 1.08998 * 109.50516 * 330.08433 * 9 8 5 44 44 H 1.08998 * 109.52759 * 297.51706 * 10 9 8 45 45 H 1.09004 * 109.52488 * 57.71371 * 10 9 8 46 46 H 1.09002 * 109.49725 * 62.28820 * 11 10 9 47 47 H 1.09002 * 109.50544 * 182.36318 * 11 10 9 48 48 H 1.08997 * 109.46590 * 299.16003 * 12 11 10 49 49 H 1.09000 * 109.46841 * 179.19033 * 12 11 10 50 50 H 1.08005 * 120.76367 * 179.72898 * 17 15 14 51 51 H 1.09004 * 109.47195 * 60.26375 * 19 18 17 52 52 H 0.96694 * 114.00035 * 299.99566 * 20 19 18 53 53 H 1.07995 * 119.55481 * 179.72384 * 25 18 17 54 54 H 1.09001 * 109.46780 * 181.75561 * 27 13 12 55 55 H 1.09000 * 109.46310 * 301.73140 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2492 5 14 2.1510 -0.8783 1.5211 6 6 1.5300 0.0000 3.0423 7 6 4.0140 -0.8789 1.5207 8 8 1.6073 -2.4160 1.5211 9 6 2.0294 -3.1818 2.6513 10 6 1.0005 -3.0432 3.7768 11 6 1.4306 -3.9137 4.9609 12 6 1.5675 -5.3655 4.4972 13 7 2.5633 -5.4452 3.4208 14 6 2.8085 -6.7680 3.0652 15 6 3.2141 -7.6803 4.0366 16 9 3.3703 -7.2899 5.3206 17 6 3.4600 -8.9919 3.6667 18 6 3.2801 -9.3498 2.3370 19 6 3.5292 -10.7672 1.8901 20 8 4.8866 -11.1211 2.1625 21 14 3.2059 -10.9074 0.0607 22 1 4.1136 -9.9901 -0.6740 23 1 3.4508 -12.3044 -0.3796 24 1 1.7953 -10.5398 -0.2224 25 6 2.8762 -8.3931 1.4277 26 7 2.6542 -7.1486 1.8069 27 6 2.1490 -4.6550 2.2546 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.6766 -1.7489 -1.2492 35 1 1.6766 -0.2073 -2.1392 36 1 3.1299 -0.7209 -1.2495 37 1 1.8930 -0.5142 3.9322 38 1 1.8933 1.0276 3.0423 39 1 0.4400 0.0000 3.0423 40 1 4.3769 -1.3931 0.6307 41 1 4.3777 0.1485 1.5205 42 1 4.3773 -1.3932 2.4104 43 1 2.9973 -2.8181 2.9963 44 1 0.9438 -2.0014 4.0923 45 1 0.0239 -3.3704 3.4199 46 1 2.3891 -3.5615 5.3421 47 1 0.6804 -3.8520 5.7493 48 1 0.6054 -5.7215 4.1288 49 1 1.8875 -5.9857 5.3345 50 1 3.7799 -9.7211 4.3964 51 1 2.8629 -11.4406 2.4294 52 1 5.5362 -10.5624 1.7143 53 1 2.7396 -8.6667 0.3920 54 1 2.8912 -4.7588 1.4631 55 1 1.1840 -5.0140 1.8968 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_12102090_17656566.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:28:47 Heat of formation + Delta-G solvation = -118.115359 kcal Electronic energy + Delta-G solvation = -33297.193542 eV Core-core repulsion = 28986.405920 eV Total energy + Delta-G solvation = -4310.787622 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 370.200 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -50.12253 -41.93338 -40.24466 -38.14046 -37.23191 -36.83774 -34.50253 -33.26296 -31.65826 -30.81649 -29.34960 -29.13273 -27.87026 -27.49744 -27.11690 -25.61548 -24.69773 -23.57702 -22.85377 -21.08900 -20.40262 -19.14842 -18.93608 -18.38640 -17.70370 -17.63515 -17.10787 -16.56424 -16.16198 -16.02254 -15.85545 -15.74850 -15.70111 -15.55339 -15.29354 -14.84715 -14.80178 -14.74861 -14.47704 -14.19205 -14.10191 -13.96342 -13.76188 -13.63434 -13.50437 -13.35820 -13.16493 -12.97566 -12.93752 -12.90788 -12.64622 -12.47975 -12.39707 -12.14689 -12.05077 -11.96088 -11.80379 -11.70397 -11.64087 -11.34206 -11.25986 -11.07011 -10.78446 -10.69367 -10.46037 -10.32739 -10.06093 -9.24951 -0.33744 -0.09596 1.14313 1.38305 1.47975 1.52310 1.77794 1.93215 2.09494 2.13345 2.36120 2.53367 2.96071 3.15621 3.37892 3.58046 3.62625 3.71216 3.75009 3.84324 3.89943 4.05746 4.10344 4.12012 4.13956 4.29782 4.37090 4.45787 4.46002 4.52387 4.60775 4.64933 4.70242 4.73068 4.74576 4.77505 4.78854 4.81623 4.82942 4.84927 4.85831 4.95387 4.99342 5.06205 5.08623 5.09151 5.18263 5.22548 5.25604 5.33856 5.40524 5.42813 5.45582 5.58034 5.64303 5.69317 5.83651 6.60729 6.67722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.379 4.379 3 C -0.141 4.141 4 C -0.138 4.138 5 Si 1.307 2.693 6 C -0.514 4.514 7 C -0.520 4.520 8 O -0.631 6.631 9 C 0.119 3.881 10 C -0.161 4.161 11 C -0.111 4.111 12 C 0.040 3.960 13 N -0.476 5.476 14 C 0.282 3.718 15 C 0.022 3.978 16 F -0.126 7.126 17 C -0.053 4.053 18 C -0.166 4.166 19 C -0.066 4.066 20 O -0.549 6.549 21 Si 0.972 3.028 22 H -0.249 1.249 23 H -0.268 1.268 24 H -0.252 1.252 25 C 0.110 3.890 26 N -0.507 5.507 27 C 0.072 3.928 28 H 0.062 0.938 29 H 0.048 0.952 30 H 0.054 0.946 31 H 0.061 0.939 32 H 0.051 0.949 33 H 0.065 0.935 34 H 0.054 0.946 35 H 0.049 0.951 36 H 0.058 0.942 37 H 0.076 0.924 38 H 0.078 0.922 39 H 0.075 0.925 40 H 0.066 0.934 41 H 0.079 0.921 42 H 0.067 0.933 43 H 0.073 0.927 44 H 0.095 0.905 45 H 0.074 0.926 46 H 0.080 0.920 47 H 0.100 0.900 48 H 0.049 0.951 49 H 0.098 0.902 50 H 0.170 0.830 51 H 0.136 0.864 52 H 0.390 0.610 53 H 0.172 0.828 54 H 0.083 0.917 55 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.660 -0.430 1.107 1.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.422 4.422 3 C -0.198 4.198 4 C -0.195 4.195 5 Si 1.438 2.562 6 C -0.616 4.616 7 C -0.621 4.621 8 O -0.590 6.590 9 C 0.061 3.939 10 C -0.198 4.198 11 C -0.149 4.149 12 C -0.085 4.085 13 N -0.194 5.194 14 C 0.049 3.951 15 C -0.002 4.002 16 F -0.104 7.104 17 C -0.079 4.079 18 C -0.170 4.170 19 C -0.177 4.177 20 O -0.356 6.356 21 Si 0.795 3.205 22 H -0.173 1.173 23 H -0.193 1.193 24 H -0.176 1.176 25 C -0.048 4.048 26 N -0.220 5.220 27 C -0.055 4.055 28 H 0.081 0.919 29 H 0.067 0.933 30 H 0.073 0.927 31 H 0.080 0.920 32 H 0.070 0.930 33 H 0.084 0.916 34 H 0.073 0.927 35 H 0.068 0.932 36 H 0.077 0.923 37 H 0.095 0.905 38 H 0.098 0.902 39 H 0.094 0.906 40 H 0.085 0.915 41 H 0.098 0.902 42 H 0.086 0.914 43 H 0.091 0.909 44 H 0.113 0.887 45 H 0.092 0.908 46 H 0.098 0.902 47 H 0.118 0.882 48 H 0.068 0.932 49 H 0.116 0.884 50 H 0.188 0.812 51 H 0.154 0.846 52 H 0.240 0.760 53 H 0.188 0.812 54 H 0.101 0.899 55 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.114 -0.197 0.052 1.133 hybrid contribution 0.304 0.138 0.513 0.612 sum -0.810 -0.059 0.565 0.989 Atomic orbital electron populations 1.21535 0.94083 1.01744 1.01974 1.25867 1.00516 1.02995 1.12852 1.21607 1.01209 0.94620 1.02374 1.21547 1.00916 1.00007 0.97013 0.76372 0.62273 0.52804 0.64732 1.27200 1.07130 1.09832 1.17484 1.27143 1.25749 1.04921 1.04263 1.85329 1.79357 1.46572 1.47724 1.21521 0.97269 0.90649 0.84413 1.22476 0.99635 1.02669 0.95065 1.21584 1.03684 0.91796 0.97841 1.22605 0.92085 1.00508 0.93267 1.59018 1.44090 1.04961 1.11328 1.20073 0.96296 0.89741 0.88989 1.18205 1.08316 0.94104 0.79572 1.91459 1.93306 1.91228 1.34446 1.21600 0.95103 0.93762 0.97423 1.21251 1.03602 0.98704 0.93455 1.24896 0.87487 0.92113 1.13231 1.86510 1.14432 1.59833 1.74782 0.85358 0.81118 0.80400 0.73589 1.17287 1.19314 1.17630 1.22806 0.94215 0.87227 1.00519 1.67738 1.18128 1.19784 1.16340 1.21952 1.01155 0.91587 0.90797 0.91862 0.93265 0.92652 0.91971 0.92996 0.91594 0.92678 0.93160 0.92308 0.90530 0.90243 0.90617 0.91467 0.90186 0.91411 0.90924 0.88651 0.90757 0.90151 0.88154 0.93219 0.88396 0.81237 0.84622 0.76019 0.81163 0.89893 0.92808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.11 7.85 71.98 0.56 0.46 16 2 C -0.38 -0.09 0.53 -10.80 -0.01 -0.10 16 3 C -0.14 0.12 7.85 71.98 0.56 0.69 16 4 C -0.14 -0.23 7.85 71.98 0.56 0.33 16 5 Si 1.31 -1.60 8.07 68.60 0.55 -1.05 16 6 C -0.51 1.22 7.46 113.37 0.85 2.07 16 7 C -0.52 -0.08 8.56 113.37 0.97 0.89 16 8 O -0.63 -1.41 8.28 -148.98 -1.23 -2.64 16 9 C 0.12 0.17 2.31 30.65 0.07 0.24 16 10 C -0.16 0.23 5.38 30.68 0.16 0.39 16 11 C -0.11 0.29 6.09 30.64 0.19 0.48 16 12 C 0.04 0.03 5.16 86.32 0.45 0.48 16 13 N -0.48 -2.01 4.63 -701.73 -3.25 -5.26 16 14 C 0.28 1.53 6.42 133.06 0.85 2.38 16 15 C 0.02 0.08 6.98 22.58 0.16 0.24 16 16 F -0.13 -0.57 14.77 44.97 0.66 0.10 16 17 C -0.05 0.01 9.75 22.48 0.22 0.23 16 18 C -0.17 0.26 5.40 -19.77 -0.11 0.15 16 19 C -0.07 0.31 2.84 71.23 0.20 0.51 16 20 O -0.55 1.75 12.77 -148.98 -1.90 -0.16 16 21 Si 0.97 -4.08 25.10 68.60 1.72 -2.36 16 22 H -0.25 0.94 7.11 99.48 0.71 1.65 16 23 H -0.27 0.16 7.11 99.48 0.71 0.86 16 24 H -0.25 0.79 7.11 99.48 0.71 1.49 16 25 C 0.11 0.12 9.84 84.62 0.83 0.95 16 26 N -0.51 -2.81 8.69 -193.03 -1.68 -4.49 16 27 C 0.07 0.32 4.31 86.33 0.37 0.69 16 28 H 0.06 -0.07 7.79 -2.38 -0.02 -0.09 16 29 H 0.05 0.08 8.14 -2.39 -0.02 0.06 16 30 H 0.05 0.09 7.97 -2.39 -0.02 0.07 16 31 H 0.06 -0.13 7.79 -2.38 -0.02 -0.15 16 32 H 0.05 0.01 8.14 -2.39 -0.02 -0.01 16 33 H 0.07 -0.18 7.79 -2.39 -0.02 -0.20 16 34 H 0.05 0.15 7.97 -2.39 -0.02 0.13 16 35 H 0.05 0.11 8.14 -2.39 -0.02 0.09 16 36 H 0.06 0.03 7.79 -2.39 -0.02 0.02 16 37 H 0.08 -0.25 6.42 -2.39 -0.02 -0.27 16 38 H 0.08 -0.25 7.79 -2.39 -0.02 -0.27 16 39 H 0.07 -0.18 7.79 -2.39 -0.02 -0.20 16 40 H 0.07 0.09 7.79 -2.39 -0.02 0.07 16 41 H 0.08 -0.09 7.79 -2.39 -0.02 -0.11 16 42 H 0.07 0.01 7.10 -2.39 -0.02 -0.01 16 43 H 0.07 0.01 6.15 -2.39 -0.01 0.00 16 44 H 0.10 -0.33 4.88 -2.39 -0.01 -0.35 16 45 H 0.07 -0.04 8.14 -2.39 -0.02 -0.06 16 46 H 0.08 -0.22 8.14 -2.39 -0.02 -0.24 16 47 H 0.10 -0.58 8.14 -2.39 -0.02 -0.60 16 48 H 0.05 0.05 8.14 -2.39 -0.02 0.03 16 49 H 0.10 0.08 5.54 -2.39 -0.01 0.07 16 50 H 0.17 -0.57 8.06 -2.91 -0.02 -0.59 16 51 H 0.14 -0.97 7.96 -2.38 -0.02 -0.99 16 52 H 0.39 -3.53 8.70 -74.06 -0.64 -4.18 16 53 H 0.17 -0.43 4.88 -2.91 -0.01 -0.45 16 54 H 0.08 0.55 7.71 -2.39 -0.02 0.53 16 55 H 0.05 0.34 8.11 -2.39 -0.02 0.32 16 Total: 0.00 -10.90 418.95 2.76 -8.14 By element: Atomic # 1 Polarization: -4.36 SS G_CDS: 0.99 Total: -3.37 kcal Atomic # 6 Polarization: 4.18 SS G_CDS: 6.90 Total: 11.09 kcal Atomic # 7 Polarization: -4.82 SS G_CDS: -4.93 Total: -9.75 kcal Atomic # 8 Polarization: 0.34 SS G_CDS: -3.14 Total: -2.79 kcal Atomic # 9 Polarization: -0.57 SS G_CDS: 0.66 Total: 0.10 kcal Atomic # 14 Polarization: -5.68 SS G_CDS: 2.28 Total: -3.41 kcal Total: -10.90 2.76 -8.14 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_12102090_17656566.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.979 kcal (2) G-P(sol) polarization free energy of solvation -10.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -8.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds