Wall clock time and date at job start Mon Mar 8 2021 05:29:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47251 * 2 1 4 4 C 1.52995 * 109.47360 * 239.99760 * 2 1 3 5 5 Si 1.86305 * 109.47000 * 119.99761 * 2 1 3 6 6 C 1.86304 * 109.47041 * 299.99777 * 5 2 1 7 7 C 1.86301 * 109.47087 * 180.02562 * 5 2 1 8 8 O 1.63094 * 109.47117 * 60.00081 * 5 2 1 9 9 C 1.42897 * 114.00075 * 179.97438 * 8 5 2 10 10 C 1.55139 * 110.70918 * 205.05232 * 9 8 5 11 11 C 1.54904 * 101.65629 * 205.96381 * 10 9 8 12 12 N 1.47843 * 104.79405 * 37.06983 * 11 10 9 13 13 C 1.38401 * 111.00018 * 213.63605 * 12 11 10 14 14 N 1.32493 * 119.21712 * 120.57595 * 13 12 11 15 15 C 1.32282 * 120.73998 * 179.72110 * 14 13 12 16 16 C 1.38608 * 119.19542 * 0.54257 * 15 14 13 17 17 C 1.50699 * 120.72156 * 179.71226 * 16 15 14 18 18 O 1.42893 * 109.47154 * 245.01982 * 17 16 15 19 19 Si 1.86298 * 109.46952 * 5.01959 * 17 16 15 20 20 H 1.48500 * 109.47264 * 179.97438 * 19 17 16 21 21 H 1.48504 * 109.47232 * 299.99842 * 19 17 16 22 22 H 1.48498 * 109.47302 * 60.00130 * 19 17 16 23 23 C 1.38603 * 118.55824 * 359.72785 * 16 15 14 24 24 N 1.32274 * 119.19824 * 0.02562 * 23 16 15 25 25 C 1.47446 * 108.56761 * 335.90448 * 12 11 10 26 26 H 1.09000 * 109.46913 * 300.00114 * 1 2 3 27 27 H 1.09001 * 109.46783 * 60.00122 * 1 2 3 28 28 H 1.08999 * 109.47023 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47541 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.47128 * 299.99667 * 3 2 1 31 31 H 1.08996 * 109.47539 * 59.99390 * 3 2 1 32 32 H 1.09003 * 109.47222 * 300.00472 * 4 2 1 33 33 H 1.09008 * 109.47180 * 59.99888 * 4 2 1 34 34 H 1.09002 * 109.47431 * 180.02562 * 4 2 1 35 35 H 1.09000 * 109.46571 * 179.97438 * 6 5 2 36 36 H 1.08999 * 109.47427 * 300.00232 * 6 5 2 37 37 H 1.08996 * 109.46681 * 60.00596 * 6 5 2 38 38 H 1.09009 * 109.47006 * 300.00124 * 7 5 2 39 39 H 1.09007 * 109.46923 * 59.99737 * 7 5 2 40 40 H 1.08992 * 109.47449 * 180.02562 * 7 5 2 41 41 H 1.09003 * 110.76596 * 328.25656 * 9 8 5 42 42 H 1.09005 * 110.98834 * 324.05925 * 10 9 8 43 43 H 1.08998 * 110.98952 * 87.86825 * 10 9 8 44 44 H 1.08998 * 110.37178 * 278.24131 * 11 10 9 45 45 H 1.09003 * 110.37142 * 155.89745 * 11 10 9 46 46 H 1.07997 * 120.40460 * 180.29685 * 15 14 13 47 47 H 1.08997 * 109.47500 * 125.01796 * 17 16 15 48 48 H 0.96702 * 114.00514 * 179.97438 * 18 17 16 49 49 H 1.08000 * 120.40221 * 179.97438 * 23 16 15 50 50 H 1.08997 * 109.88511 * 120.39826 * 25 12 11 51 51 H 1.08994 * 109.88544 * 241.58152 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 14 2.1510 -0.8782 1.5212 6 6 1.5300 0.0002 3.0423 7 6 4.0140 -0.8775 1.5216 8 8 1.6074 -2.4159 1.5213 9 6 2.0295 -3.1815 2.6515 10 6 2.0405 -4.6960 2.3151 11 6 1.8390 -5.3290 3.7144 12 7 0.8972 -4.4234 4.4063 13 6 1.1686 -4.3673 5.7623 14 7 1.4695 -3.2009 6.3139 15 6 1.7288 -3.1118 7.6080 16 6 1.6937 -4.2589 8.3852 17 6 1.9897 -4.1980 9.8616 18 8 3.1842 -4.9318 10.1386 19 14 2.2184 -2.4222 10.3762 20 1 2.5095 -2.3620 11.8312 21 1 3.3503 -1.8293 9.6196 22 1 0.9771 -1.6596 10.0884 23 6 1.3808 -5.4634 7.7749 24 7 1.1270 -5.4823 6.4769 25 6 0.9945 -3.0865 3.7922 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 3.1301 1.4425 -0.0005 30 1 1.6768 1.9563 -0.8900 31 1 1.6767 1.9564 0.8899 32 1 1.6767 -1.7489 -1.2492 33 1 1.6767 -0.2075 -2.1392 34 1 3.1301 -0.7217 -1.2489 35 1 1.8930 -0.5139 3.9323 36 1 1.8933 1.0278 3.0423 37 1 0.4401 0.0001 3.0423 38 1 4.3777 -1.3912 0.6316 39 1 4.3770 0.1503 1.5218 40 1 4.3774 -1.3917 2.4113 41 1 3.0116 -2.8557 2.9941 42 1 1.2180 -4.9537 1.6478 43 1 2.9973 -4.9936 1.8860 44 1 2.7867 -5.3728 4.2511 45 1 1.4080 -6.3258 3.6215 46 1 1.9688 -2.1574 8.0529 47 1 1.1590 -4.6331 10.4170 48 1 3.4362 -4.9352 11.0721 49 1 1.3455 -6.3756 8.3520 50 1 0.0253 -2.7918 3.3900 51 1 1.3265 -2.3608 4.5346 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_12102092_12175864.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:29:00 Heat of formation + Delta-G solvation = -52.870533 kcal Electronic energy + Delta-G solvation = -28604.244061 eV Core-core repulsion = 24855.851351 eV Total energy + Delta-G solvation = -3748.392710 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.189 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.49338 -40.27912 -38.10215 -37.09348 -36.83770 -34.88748 -33.75315 -31.18957 -29.99516 -29.24165 -28.86575 -27.86956 -27.37807 -26.74390 -25.78432 -23.80902 -22.31881 -22.05837 -20.40506 -19.33262 -18.85472 -18.55326 -18.12799 -16.90262 -16.56714 -16.24376 -15.99761 -15.84416 -15.70426 -15.27141 -14.96997 -14.92175 -14.76991 -14.61744 -14.45562 -14.06934 -13.91092 -13.72057 -13.61423 -13.44191 -13.37597 -13.24137 -13.18915 -12.94004 -12.92847 -12.73210 -12.42007 -12.36571 -12.27108 -12.11312 -11.87754 -11.83308 -11.74638 -11.65686 -11.55683 -11.18353 -11.11621 -10.61167 -10.39375 -10.12198 -10.07925 -9.37524 -0.23190 0.03652 0.95320 1.26739 1.34260 1.37349 1.72954 1.74319 2.02837 2.09384 2.43359 2.59908 2.97276 3.19346 3.40971 3.47415 3.57816 3.72994 3.77293 3.90666 3.96658 4.07518 4.11590 4.12907 4.23406 4.35045 4.46186 4.51697 4.63530 4.66034 4.70966 4.73229 4.76935 4.78664 4.80830 4.82320 4.85554 4.88557 4.99652 5.03062 5.10140 5.10385 5.18939 5.20480 5.33544 5.40818 5.42801 5.46206 5.53721 5.56633 5.63544 5.66393 6.09956 6.41344 7.05421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.373 4.373 3 C -0.137 4.137 4 C -0.134 4.134 5 Si 1.279 2.721 6 C -0.510 4.510 7 C -0.511 4.511 8 O -0.608 6.608 9 C 0.098 3.902 10 C -0.130 4.130 11 C 0.060 3.940 12 N -0.447 5.447 13 C 0.492 3.508 14 N -0.548 5.548 15 C 0.175 3.825 16 C -0.216 4.216 17 C -0.065 4.065 18 O -0.545 6.545 19 Si 0.933 3.067 20 H -0.248 1.248 21 H -0.244 1.244 22 H -0.246 1.246 23 C 0.208 3.792 24 N -0.523 5.523 25 C 0.002 3.998 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.060 0.940 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.060 0.940 33 H 0.053 0.947 34 H 0.053 0.947 35 H 0.070 0.930 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.075 0.925 40 H 0.065 0.935 41 H 0.072 0.928 42 H 0.098 0.902 43 H 0.089 0.911 44 H 0.058 0.942 45 H 0.103 0.897 46 H 0.163 0.837 47 H 0.082 0.918 48 H 0.384 0.616 49 H 0.176 0.824 50 H 0.102 0.898 51 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.535 0.400 3.207 3.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.417 4.417 3 C -0.194 4.194 4 C -0.191 4.191 5 Si 1.410 2.590 6 C -0.612 4.612 7 C -0.612 4.612 8 O -0.566 6.566 9 C 0.040 3.960 10 C -0.168 4.168 11 C -0.066 4.066 12 N -0.167 5.167 13 C 0.136 3.864 14 N -0.266 5.266 15 C 0.008 3.992 16 C -0.222 4.222 17 C -0.177 4.177 18 O -0.352 6.352 19 Si 0.755 3.245 20 H -0.171 1.171 21 H -0.168 1.168 22 H -0.169 1.169 23 C 0.040 3.960 24 N -0.240 5.240 25 C -0.125 4.125 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.079 0.921 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.089 0.911 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.094 0.906 40 H 0.084 0.916 41 H 0.090 0.910 42 H 0.117 0.883 43 H 0.107 0.893 44 H 0.077 0.923 45 H 0.122 0.878 46 H 0.180 0.820 47 H 0.100 0.900 48 H 0.232 0.768 49 H 0.193 0.807 50 H 0.120 0.880 51 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 0.755 0.740 1.511 1.844 hybrid contribution 0.915 0.469 1.675 1.965 sum 1.670 1.210 3.186 3.795 Atomic orbital electron populations 1.21515 0.93735 1.02079 1.01811 1.25754 1.00735 1.02585 1.12578 1.21558 1.00742 0.94930 1.02177 1.21517 1.00565 1.00287 0.96774 0.76871 0.63103 0.53699 0.65279 1.27131 1.07113 1.09436 1.17568 1.27037 1.25060 1.04759 1.04386 1.85430 1.78959 1.45977 1.46234 1.22702 0.95879 0.92652 0.84759 1.22971 1.04439 0.92813 0.96547 1.23059 0.93507 0.97249 0.92763 1.59997 1.47502 1.11584 0.97641 1.21215 0.87906 0.84666 0.92586 1.68173 1.17356 1.28247 1.12873 1.22914 0.89613 0.98131 0.88520 1.20867 1.08013 0.96272 0.97013 1.24417 0.90422 1.08876 0.94017 1.86493 1.41688 1.75301 1.31672 0.85903 0.82156 0.75131 0.81318 1.17119 1.16766 1.16890 1.23051 0.86409 0.97542 0.88958 1.68138 1.18126 1.29978 1.07739 1.23811 1.02050 0.89429 0.97180 0.92666 0.92787 0.92093 0.92564 0.92479 0.92482 0.92113 0.92767 0.92751 0.91109 0.90796 0.90755 0.90833 0.90632 0.91598 0.91035 0.88301 0.89280 0.92303 0.87846 0.81989 0.89973 0.76794 0.80703 0.88033 0.86922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.04 7.85 37.16 0.29 0.25 16 2 C -0.37 0.02 0.53 -90.62 -0.05 -0.03 16 3 C -0.14 0.05 7.85 37.16 0.29 0.34 16 4 C -0.13 -0.03 7.85 37.16 0.29 0.26 16 5 Si 1.28 -0.78 8.14 -169.99 -1.38 -2.16 16 6 C -0.51 0.08 8.14 101.05 0.82 0.91 16 7 C -0.51 0.13 8.57 101.05 0.87 1.00 16 8 O -0.61 -0.38 8.34 -35.23 -0.29 -0.67 16 9 C 0.10 0.04 2.86 -24.91 -0.07 -0.03 16 10 C -0.13 0.04 6.80 -24.60 -0.17 -0.13 16 11 C 0.06 0.05 6.41 -2.30 -0.01 0.03 16 12 N -0.45 -1.23 5.25 -172.19 -0.90 -2.14 16 13 C 0.49 1.81 6.92 -322.81 -2.23 -0.42 16 14 N -0.55 -1.72 7.95 -13.93 -0.11 -1.83 16 15 C 0.18 0.25 9.92 -17.22 -0.17 0.08 16 16 C -0.22 -0.13 5.40 -104.35 -0.56 -0.69 16 17 C -0.07 0.13 2.82 36.01 0.10 0.24 16 18 O -0.55 0.88 12.82 -35.23 -0.45 0.43 16 19 Si 0.93 -1.95 25.21 -169.99 -4.28 -6.23 16 20 H -0.25 0.48 7.11 56.52 0.40 0.89 16 21 H -0.24 0.20 7.06 56.52 0.40 0.60 16 22 H -0.25 0.33 7.11 56.52 0.40 0.73 16 23 C 0.21 0.28 10.99 -17.23 -0.19 0.09 16 24 N -0.52 -1.85 10.12 -13.93 -0.14 -1.99 16 25 C 0.00 0.00 5.53 -2.84 -0.02 -0.01 16 26 H 0.05 -0.01 7.79 -51.93 -0.40 -0.42 16 27 H 0.05 0.03 8.14 -51.93 -0.42 -0.40 16 28 H 0.06 0.03 7.96 -51.93 -0.41 -0.38 16 29 H 0.06 -0.05 7.79 -51.93 -0.40 -0.46 16 30 H 0.06 0.00 8.14 -51.93 -0.42 -0.42 16 31 H 0.06 -0.05 7.79 -51.93 -0.40 -0.46 16 32 H 0.06 0.02 7.97 -51.93 -0.41 -0.39 16 33 H 0.05 0.02 8.14 -51.92 -0.42 -0.40 16 34 H 0.05 -0.02 7.79 -51.93 -0.40 -0.42 16 35 H 0.07 0.01 6.51 -51.93 -0.34 -0.33 16 36 H 0.07 -0.04 7.79 -51.93 -0.40 -0.45 16 37 H 0.07 0.00 7.79 -51.93 -0.40 -0.40 16 38 H 0.07 -0.01 7.79 -51.92 -0.40 -0.42 16 39 H 0.07 -0.04 7.79 -51.92 -0.40 -0.45 16 40 H 0.06 -0.02 7.12 -51.93 -0.37 -0.39 16 41 H 0.07 -0.04 6.31 -51.93 -0.33 -0.37 16 42 H 0.10 0.00 8.14 -51.93 -0.42 -0.43 16 43 H 0.09 -0.15 8.14 -51.93 -0.42 -0.57 16 44 H 0.06 0.05 7.79 -51.93 -0.40 -0.35 16 45 H 0.10 0.04 8.14 -51.93 -0.42 -0.38 16 46 H 0.16 -0.11 5.03 -52.49 -0.26 -0.37 16 47 H 0.08 -0.33 7.96 -51.93 -0.41 -0.75 16 48 H 0.38 -2.28 8.74 45.56 0.40 -1.88 16 49 H 0.18 -0.21 8.06 -52.49 -0.42 -0.64 16 50 H 0.10 0.18 8.06 -51.93 -0.42 -0.24 16 51 H 0.11 0.21 4.57 -51.93 -0.24 -0.03 16 LS Contribution 394.77 15.07 5.95 5.95 Total: 0.00 -6.11 394.77 -10.63 -16.73 By element: Atomic # 1 Polarization: -1.78 SS G_CDS: -8.20 Total: -9.98 kcal Atomic # 6 Polarization: 2.69 SS G_CDS: -0.81 Total: 1.88 kcal Atomic # 7 Polarization: -4.80 SS G_CDS: -1.16 Total: -5.95 kcal Atomic # 8 Polarization: 0.50 SS G_CDS: -0.75 Total: -0.24 kcal Atomic # 14 Polarization: -2.72 SS G_CDS: -5.67 Total: -8.39 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -6.11 -10.63 -16.73 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_12102092_12175864.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.137 kcal (2) G-P(sol) polarization free energy of solvation -6.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds