Wall clock time and date at job start Mon Mar 8 2021 05:29:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47251 * 2 1 4 4 C 1.52995 * 109.47360 * 239.99760 * 2 1 3 5 5 Si 1.86305 * 109.47000 * 119.99761 * 2 1 3 6 6 C 1.86304 * 109.47041 * 299.99777 * 5 2 1 7 7 C 1.86301 * 109.47087 * 180.02562 * 5 2 1 8 8 O 1.63094 * 109.47117 * 60.00081 * 5 2 1 9 9 C 1.42897 * 114.00075 * 179.97438 * 8 5 2 10 10 C 1.55139 * 110.70918 * 205.05232 * 9 8 5 11 11 C 1.54904 * 101.65629 * 205.96381 * 10 9 8 12 12 N 1.47843 * 104.79405 * 37.06983 * 11 10 9 13 13 C 1.38401 * 111.00018 * 213.63605 * 12 11 10 14 14 N 1.32493 * 119.21712 * 120.57595 * 13 12 11 15 15 C 1.32282 * 120.73998 * 179.72110 * 14 13 12 16 16 C 1.38608 * 119.19542 * 0.54257 * 15 14 13 17 17 C 1.50699 * 120.72156 * 179.71226 * 16 15 14 18 18 O 1.42893 * 109.47154 * 245.01982 * 17 16 15 19 19 Si 1.86298 * 109.46952 * 5.01959 * 17 16 15 20 20 H 1.48500 * 109.47264 * 179.97438 * 19 17 16 21 21 H 1.48504 * 109.47232 * 299.99842 * 19 17 16 22 22 H 1.48498 * 109.47302 * 60.00130 * 19 17 16 23 23 C 1.38603 * 118.55824 * 359.72785 * 16 15 14 24 24 N 1.32274 * 119.19824 * 0.02562 * 23 16 15 25 25 C 1.47446 * 108.56761 * 335.90448 * 12 11 10 26 26 H 1.09000 * 109.46913 * 300.00114 * 1 2 3 27 27 H 1.09001 * 109.46783 * 60.00122 * 1 2 3 28 28 H 1.08999 * 109.47023 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47541 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.47128 * 299.99667 * 3 2 1 31 31 H 1.08996 * 109.47539 * 59.99390 * 3 2 1 32 32 H 1.09003 * 109.47222 * 300.00472 * 4 2 1 33 33 H 1.09008 * 109.47180 * 59.99888 * 4 2 1 34 34 H 1.09002 * 109.47431 * 180.02562 * 4 2 1 35 35 H 1.09000 * 109.46571 * 179.97438 * 6 5 2 36 36 H 1.08999 * 109.47427 * 300.00232 * 6 5 2 37 37 H 1.08996 * 109.46681 * 60.00596 * 6 5 2 38 38 H 1.09009 * 109.47006 * 300.00124 * 7 5 2 39 39 H 1.09007 * 109.46923 * 59.99737 * 7 5 2 40 40 H 1.08992 * 109.47449 * 180.02562 * 7 5 2 41 41 H 1.09003 * 110.76596 * 328.25656 * 9 8 5 42 42 H 1.09005 * 110.98834 * 324.05925 * 10 9 8 43 43 H 1.08998 * 110.98952 * 87.86825 * 10 9 8 44 44 H 1.08998 * 110.37178 * 278.24131 * 11 10 9 45 45 H 1.09003 * 110.37142 * 155.89745 * 11 10 9 46 46 H 1.07997 * 120.40460 * 180.29685 * 15 14 13 47 47 H 1.08997 * 109.47500 * 125.01796 * 17 16 15 48 48 H 0.96702 * 114.00514 * 179.97438 * 18 17 16 49 49 H 1.08000 * 120.40221 * 179.97438 * 23 16 15 50 50 H 1.08997 * 109.88511 * 120.39826 * 25 12 11 51 51 H 1.08994 * 109.88544 * 241.58152 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 14 2.1510 -0.8782 1.5212 6 6 1.5300 0.0002 3.0423 7 6 4.0140 -0.8775 1.5216 8 8 1.6074 -2.4159 1.5213 9 6 2.0295 -3.1815 2.6515 10 6 2.0405 -4.6960 2.3151 11 6 1.8390 -5.3290 3.7144 12 7 0.8972 -4.4234 4.4063 13 6 1.1686 -4.3673 5.7623 14 7 1.4695 -3.2009 6.3139 15 6 1.7288 -3.1118 7.6080 16 6 1.6937 -4.2589 8.3852 17 6 1.9897 -4.1980 9.8616 18 8 3.1842 -4.9318 10.1386 19 14 2.2184 -2.4222 10.3762 20 1 2.5095 -2.3620 11.8312 21 1 3.3503 -1.8293 9.6196 22 1 0.9771 -1.6596 10.0884 23 6 1.3808 -5.4634 7.7749 24 7 1.1270 -5.4823 6.4769 25 6 0.9945 -3.0865 3.7922 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 3.1301 1.4425 -0.0005 30 1 1.6768 1.9563 -0.8900 31 1 1.6767 1.9564 0.8899 32 1 1.6767 -1.7489 -1.2492 33 1 1.6767 -0.2075 -2.1392 34 1 3.1301 -0.7217 -1.2489 35 1 1.8930 -0.5139 3.9323 36 1 1.8933 1.0278 3.0423 37 1 0.4401 0.0001 3.0423 38 1 4.3777 -1.3912 0.6316 39 1 4.3770 0.1503 1.5218 40 1 4.3774 -1.3917 2.4113 41 1 3.0116 -2.8557 2.9941 42 1 1.2180 -4.9537 1.6478 43 1 2.9973 -4.9936 1.8860 44 1 2.7867 -5.3728 4.2511 45 1 1.4080 -6.3258 3.6215 46 1 1.9688 -2.1574 8.0529 47 1 1.1590 -4.6331 10.4170 48 1 3.4362 -4.9352 11.0721 49 1 1.3455 -6.3756 8.3520 50 1 0.0253 -2.7918 3.3900 51 1 1.3265 -2.3608 4.5346 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_12102092_12175864.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:29:00 Heat of formation + Delta-G solvation = -46.918454 kcal Electronic energy + Delta-G solvation = -28603.985959 eV Core-core repulsion = 24855.851351 eV Total energy + Delta-G solvation = -3748.134609 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.189 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.58619 -40.32562 -37.98410 -37.09974 -36.83231 -35.00536 -33.76994 -31.21467 -30.03142 -29.22421 -28.87928 -27.84760 -27.38286 -26.71683 -25.86232 -23.82399 -22.35485 -22.11392 -20.40412 -19.40193 -18.89833 -18.43085 -18.13941 -16.91660 -16.56379 -16.24627 -15.98376 -15.89118 -15.66443 -15.29795 -14.95795 -14.91551 -14.77353 -14.59443 -14.40929 -14.07778 -13.95650 -13.75156 -13.61927 -13.41779 -13.32818 -13.20383 -13.18936 -12.95269 -12.92384 -12.74595 -12.40791 -12.34313 -12.18371 -12.07645 -11.98976 -11.80051 -11.73568 -11.65642 -11.56680 -11.19941 -11.15187 -10.53314 -10.39572 -10.15256 -10.07448 -9.46490 -0.31852 -0.05286 1.12338 1.39751 1.43457 1.49937 1.75949 1.89445 2.02633 2.06696 2.45072 2.50943 2.91139 3.33841 3.36660 3.46495 3.56007 3.72130 3.82958 3.89693 4.02139 4.07453 4.12529 4.12652 4.20870 4.44536 4.47833 4.52437 4.61124 4.67825 4.70857 4.75323 4.75800 4.78216 4.82547 4.83585 4.83759 4.85916 5.00405 5.02686 5.09494 5.09917 5.14213 5.21261 5.34359 5.36580 5.41274 5.45259 5.54397 5.55205 5.57652 5.64369 6.00040 6.82691 6.93452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.377 4.377 3 C -0.141 4.141 4 C -0.137 4.137 5 Si 1.304 2.696 6 C -0.517 4.517 7 C -0.516 4.516 8 O -0.617 6.617 9 C 0.097 3.903 10 C -0.125 4.125 11 C 0.061 3.939 12 N -0.460 5.460 13 C 0.476 3.524 14 N -0.561 5.561 15 C 0.160 3.840 16 C -0.213 4.213 17 C -0.060 4.060 18 O -0.561 6.561 19 Si 0.961 3.039 20 H -0.245 1.245 21 H -0.266 1.266 22 H -0.258 1.258 23 C 0.200 3.800 24 N -0.544 5.544 25 C 0.003 3.997 26 H 0.059 0.941 27 H 0.049 0.951 28 H 0.056 0.944 29 H 0.063 0.937 30 H 0.052 0.948 31 H 0.062 0.938 32 H 0.057 0.943 33 H 0.049 0.951 34 H 0.060 0.940 35 H 0.066 0.934 36 H 0.078 0.922 37 H 0.070 0.930 38 H 0.073 0.927 39 H 0.079 0.921 40 H 0.066 0.934 41 H 0.082 0.918 42 H 0.096 0.904 43 H 0.106 0.894 44 H 0.056 0.944 45 H 0.104 0.896 46 H 0.177 0.823 47 H 0.109 0.891 48 H 0.403 0.597 49 H 0.198 0.802 50 H 0.094 0.906 51 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.111 0.188 4.073 4.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.420 4.420 3 C -0.199 4.199 4 C -0.195 4.195 5 Si 1.434 2.566 6 C -0.618 4.618 7 C -0.618 4.618 8 O -0.575 6.575 9 C 0.039 3.961 10 C -0.163 4.163 11 C -0.064 4.064 12 N -0.181 5.181 13 C 0.120 3.880 14 N -0.281 5.281 15 C -0.006 4.006 16 C -0.219 4.219 17 C -0.172 4.172 18 O -0.371 6.371 19 Si 0.785 3.215 20 H -0.168 1.168 21 H -0.191 1.191 22 H -0.182 1.182 23 C 0.033 3.967 24 N -0.261 5.261 25 C -0.124 4.124 26 H 0.078 0.922 27 H 0.069 0.931 28 H 0.075 0.925 29 H 0.082 0.918 30 H 0.071 0.929 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.068 0.932 34 H 0.079 0.921 35 H 0.085 0.915 36 H 0.097 0.903 37 H 0.089 0.911 38 H 0.092 0.908 39 H 0.098 0.902 40 H 0.085 0.915 41 H 0.100 0.900 42 H 0.114 0.886 43 H 0.124 0.876 44 H 0.074 0.926 45 H 0.122 0.878 46 H 0.194 0.806 47 H 0.126 0.874 48 H 0.254 0.746 49 H 0.215 0.785 50 H 0.112 0.888 51 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 1.332 0.530 2.406 2.800 hybrid contribution 0.733 0.550 1.463 1.726 sum 2.064 1.079 3.869 4.516 Atomic orbital electron populations 1.21547 0.94212 1.01834 1.01869 1.25830 1.00399 1.02965 1.12823 1.21611 1.01294 0.94668 1.02283 1.21551 1.01040 1.00104 0.96763 0.76440 0.62746 0.52960 0.64407 1.27210 1.06934 1.09881 1.17796 1.27081 1.25109 1.05114 1.04476 1.85426 1.79260 1.46546 1.46261 1.22750 0.95865 0.93162 0.84361 1.22977 1.05252 0.92185 0.95851 1.23081 0.93067 0.97147 0.93119 1.60044 1.48118 1.12208 0.97681 1.21378 0.88667 0.84986 0.92978 1.68175 1.17897 1.28226 1.13773 1.23286 0.89656 0.99279 0.88336 1.21156 1.06720 0.95608 0.98391 1.24407 0.91358 1.09044 0.92373 1.86445 1.41741 1.75241 1.33677 0.85509 0.80471 0.74632 0.80885 1.16791 1.19083 1.18200 1.23499 0.85949 0.98748 0.88524 1.68142 1.18945 1.30190 1.08841 1.23784 1.02061 0.89103 0.97449 0.92222 0.93143 0.92497 0.91799 0.92928 0.91883 0.92390 0.93166 0.92059 0.91454 0.90278 0.91119 0.90769 0.90185 0.91491 0.90042 0.88580 0.87556 0.92572 0.87769 0.80632 0.87363 0.74583 0.78495 0.88756 0.87358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.18 7.85 71.98 0.56 0.39 16 2 C -0.38 -0.06 0.53 -10.79 -0.01 -0.07 16 3 C -0.14 0.10 7.85 71.98 0.56 0.67 16 4 C -0.14 -0.10 7.85 71.98 0.56 0.47 16 5 Si 1.30 -1.30 8.14 68.60 0.56 -0.74 16 6 C -0.52 -0.10 8.14 113.37 0.92 0.82 16 7 C -0.52 0.44 8.57 113.37 0.97 1.41 16 8 O -0.62 -1.03 8.34 -148.98 -1.24 -2.27 16 9 C 0.10 0.13 2.86 31.77 0.09 0.22 16 10 C -0.12 0.04 6.80 31.98 0.22 0.25 16 11 C 0.06 0.15 6.41 86.77 0.56 0.71 16 12 N -0.46 -3.12 5.25 -698.68 -3.67 -6.79 16 13 C 0.48 4.07 6.92 261.49 1.81 5.88 16 14 N -0.56 -4.17 7.95 -197.98 -1.57 -5.74 16 15 C 0.16 0.56 9.92 84.71 0.84 1.40 16 16 C -0.21 -0.22 5.40 -19.69 -0.11 -0.33 16 17 C -0.06 0.31 2.82 71.24 0.20 0.51 16 18 O -0.56 2.55 12.82 -148.98 -1.91 0.64 16 19 Si 0.96 -4.47 25.21 68.60 1.73 -2.74 16 20 H -0.24 1.25 7.11 99.48 0.71 1.96 16 21 H -0.27 0.31 7.06 99.48 0.70 1.01 16 22 H -0.26 0.70 7.11 99.48 0.71 1.40 16 23 C 0.20 0.53 10.99 84.71 0.93 1.46 16 24 N -0.54 -4.27 10.12 -197.99 -2.00 -6.28 16 25 C 0.00 0.01 5.53 86.64 0.48 0.49 16 26 H 0.06 0.01 7.79 -2.39 -0.02 -0.01 16 27 H 0.05 0.09 8.14 -2.39 -0.02 0.07 16 28 H 0.06 0.11 7.96 -2.39 -0.02 0.09 16 29 H 0.06 -0.15 7.79 -2.39 -0.02 -0.17 16 30 H 0.05 0.01 8.14 -2.39 -0.02 -0.01 16 31 H 0.06 -0.13 7.79 -2.39 -0.02 -0.15 16 32 H 0.06 0.07 7.97 -2.39 -0.02 0.05 16 33 H 0.05 0.07 8.14 -2.38 -0.02 0.05 16 34 H 0.06 -0.05 7.79 -2.39 -0.02 -0.07 16 35 H 0.07 0.07 6.51 -2.39 -0.02 0.05 16 36 H 0.08 -0.08 7.79 -2.39 -0.02 -0.10 16 37 H 0.07 0.06 7.79 -2.39 -0.02 0.04 16 38 H 0.07 -0.06 7.79 -2.38 -0.02 -0.08 16 39 H 0.08 -0.14 7.79 -2.38 -0.02 -0.15 16 40 H 0.07 -0.06 7.12 -2.39 -0.02 -0.08 16 41 H 0.08 -0.07 6.31 -2.39 -0.02 -0.08 16 42 H 0.10 0.03 8.14 -2.38 -0.02 0.01 16 43 H 0.11 -0.41 8.14 -2.39 -0.02 -0.43 16 44 H 0.06 0.16 7.79 -2.39 -0.02 0.14 16 45 H 0.10 0.19 8.14 -2.39 -0.02 0.17 16 46 H 0.18 -0.12 5.03 -2.91 -0.01 -0.13 16 47 H 0.11 -1.10 7.96 -2.39 -0.02 -1.12 16 48 H 0.40 -5.43 8.74 -74.06 -0.65 -6.07 16 49 H 0.20 -0.63 8.06 -2.91 -0.02 -0.65 16 50 H 0.09 0.49 8.06 -2.39 -0.02 0.47 16 51 H 0.11 0.56 4.57 -2.39 -0.01 0.55 16 Total: 0.00 -14.37 394.77 1.51 -12.86 By element: Atomic # 1 Polarization: -4.24 SS G_CDS: 1.01 Total: -3.23 kcal Atomic # 6 Polarization: 5.69 SS G_CDS: 8.60 Total: 14.29 kcal Atomic # 7 Polarization: -11.57 SS G_CDS: -7.24 Total: -18.81 kcal Atomic # 8 Polarization: 1.52 SS G_CDS: -3.15 Total: -1.63 kcal Atomic # 14 Polarization: -5.77 SS G_CDS: 2.29 Total: -3.49 kcal Total: -14.37 1.51 -12.86 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_12102092_12175864.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.057 kcal (2) G-P(sol) polarization free energy of solvation -14.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -12.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds