Wall clock time and date at job start Mon Mar 8 2021 05:29:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46897 * 2 1 4 4 C 1.53006 * 109.46599 * 240.00408 * 2 1 3 5 5 Si 1.86293 * 109.47384 * 120.00596 * 2 1 3 6 6 C 1.86302 * 109.47066 * 299.99710 * 5 2 1 7 7 C 1.86305 * 109.47126 * 180.02562 * 5 2 1 8 8 O 1.63099 * 109.47516 * 59.99707 * 5 2 1 9 9 C 1.42900 * 114.00028 * 179.97438 * 8 5 2 10 10 C 1.55133 * 110.71038 * 263.59973 * 9 8 5 11 11 C 1.54902 * 101.65556 * 205.96566 * 10 9 8 12 12 N 1.47849 * 104.79550 * 37.06931 * 11 10 9 13 13 C 1.39007 * 110.99981 * 213.63555 * 12 11 10 14 14 C 1.39093 * 119.70524 * 300.82408 * 13 12 11 15 15 C 1.38338 * 119.09731 * 179.70696 * 14 13 12 16 16 C 1.38841 * 118.50489 * 0.55000 * 15 14 13 17 17 C 1.50706 * 120.33392 * 179.76358 * 16 15 14 18 18 O 1.42895 * 109.47147 * 64.72539 * 17 16 15 19 19 Si 1.86299 * 109.46748 * 184.72181 * 17 16 15 20 20 H 1.48505 * 109.47505 * 299.99883 * 19 17 16 21 21 H 1.48503 * 109.47188 * 60.00070 * 19 17 16 22 22 H 1.48506 * 109.47139 * 179.97438 * 19 17 16 23 23 C 1.38058 * 119.32775 * 359.48678 * 16 15 14 24 24 N 1.31945 * 120.85688 * 0.23434 * 23 16 15 25 25 C 1.47443 * 108.56704 * 335.90764 * 12 11 10 26 26 H 1.09002 * 109.46897 * 299.99596 * 1 2 3 27 27 H 1.08994 * 109.47570 * 59.99906 * 1 2 3 28 28 H 1.08999 * 109.47181 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46697 * 180.02562 * 3 2 1 30 30 H 1.09002 * 109.47135 * 300.00040 * 3 2 1 31 31 H 1.08996 * 109.46858 * 60.00905 * 3 2 1 32 32 H 1.08999 * 109.46987 * 299.99668 * 4 2 1 33 33 H 1.08994 * 109.47416 * 59.99591 * 4 2 1 34 34 H 1.09000 * 109.46793 * 179.97438 * 4 2 1 35 35 H 1.08994 * 109.47384 * 180.02562 * 6 5 2 36 36 H 1.09007 * 109.46903 * 299.99914 * 6 5 2 37 37 H 1.08994 * 109.47320 * 60.00081 * 6 5 2 38 38 H 1.09002 * 109.46993 * 299.99708 * 7 5 2 39 39 H 1.08999 * 109.47344 * 59.99420 * 7 5 2 40 40 H 1.09005 * 109.46940 * 180.02562 * 7 5 2 41 41 H 1.08998 * 110.76199 * 26.80643 * 9 8 5 42 42 H 1.09003 * 110.98804 * 324.05598 * 10 9 8 43 43 H 1.09003 * 110.98878 * 87.87091 * 10 9 8 44 44 H 1.09005 * 110.37357 * 278.24235 * 11 10 9 45 45 H 1.09000 * 110.37355 * 155.89556 * 11 10 9 46 46 H 1.07999 * 120.45062 * 359.97438 * 14 13 12 47 47 H 1.08001 * 120.74964 * 180.29014 * 15 14 13 48 48 H 1.09000 * 109.47318 * 304.71652 * 17 16 15 49 49 H 0.96700 * 113.99916 * 179.97438 * 18 17 16 50 50 H 1.08003 * 119.57841 * 180.24979 * 23 16 15 51 51 H 1.08997 * 109.88868 * 120.39464 * 25 12 11 52 52 H 1.09000 * 109.88500 * 241.42207 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2494 5 14 2.1511 -0.8783 1.5210 6 6 1.5302 -0.0002 3.0422 7 6 4.0141 -0.8776 1.5213 8 8 1.6074 -2.4161 1.5210 9 6 2.0297 -3.1818 2.6512 10 6 3.2885 -4.0203 2.3064 11 6 3.1668 -5.1945 3.3094 12 7 1.7175 -5.4765 3.3864 13 6 1.3586 -5.8954 4.6624 14 6 1.9464 -7.0332 5.2051 15 6 1.5845 -7.4352 6.4783 16 6 0.6349 -6.6895 7.1638 17 6 0.2063 -7.0934 8.5510 18 8 1.3155 -6.9786 9.4445 19 14 -1.1711 -5.9779 9.1247 20 1 -0.6941 -4.5717 9.1437 21 1 -2.3239 -6.0971 8.1961 22 1 -1.5939 -6.3762 10.4914 23 6 0.0915 -5.5711 6.5639 24 7 0.4598 -5.2078 5.3501 25 6 0.9811 -4.2578 3.0036 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6767 1.9562 0.8900 32 1 1.6766 -1.7489 -1.2494 33 1 1.6765 -0.2074 -2.1393 34 1 3.1299 -0.7208 -1.2496 35 1 1.8939 -0.5138 3.9321 36 1 1.8936 1.0275 3.0422 37 1 0.4402 -0.0002 3.0423 38 1 4.3778 -1.3911 0.6312 39 1 4.3771 0.1502 1.5215 40 1 4.3775 -1.3920 2.4110 41 1 2.2202 -2.5345 3.5071 42 1 3.2488 -4.3795 1.2780 43 1 4.1993 -3.4482 2.4837 44 1 3.5485 -4.8997 4.2869 45 1 3.7040 -6.0675 2.9386 46 1 2.6786 -7.5926 4.6418 47 1 2.0275 -8.3118 6.9274 48 1 -0.1439 -8.1255 8.5371 49 1 1.1118 -7.2228 10.3577 50 1 -0.6446 -4.9858 7.0950 51 1 0.3526 -4.4613 2.1366 52 1 0.3650 -3.9198 3.8369 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_12102092_13915762.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:29:10 Heat of formation + Delta-G solvation = -74.276968 kcal Electronic energy + Delta-G solvation = -28207.353978 eV Core-core repulsion = 24523.458926 eV Total energy + Delta-G solvation = -3683.895052 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.194 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.92004 -39.96580 -37.95656 -36.96467 -36.82825 -33.74566 -33.05918 -30.79873 -29.57180 -29.26281 -29.05296 -27.86749 -27.39099 -26.39607 -24.74997 -23.40457 -22.11505 -21.73435 -20.39648 -18.91587 -18.59917 -18.29209 -17.64983 -16.75813 -16.51691 -15.99611 -15.83647 -15.61687 -15.29761 -15.07766 -14.95347 -14.79889 -14.67418 -14.52755 -14.30469 -14.17352 -14.00620 -13.67457 -13.63076 -13.47980 -13.38837 -13.22449 -13.12090 -12.93777 -12.92544 -12.69440 -12.43148 -12.40755 -12.16026 -12.14457 -12.00456 -11.74645 -11.68232 -11.43149 -11.30149 -10.90650 -10.73566 -10.47545 -10.36616 -10.27667 -10.08024 -9.07235 0.02679 0.29652 1.06612 1.36590 1.39500 1.44084 1.73583 1.84129 2.03191 2.37239 2.45717 2.78495 3.28715 3.37124 3.52643 3.64514 3.75791 3.89417 3.96605 4.02950 4.11686 4.11948 4.16901 4.21679 4.26751 4.38096 4.46757 4.62445 4.62873 4.64801 4.68876 4.70031 4.72220 4.77107 4.80695 4.83750 4.85600 4.90784 4.96852 4.99831 5.10366 5.10539 5.10878 5.19856 5.23934 5.33657 5.41421 5.45726 5.51059 5.52302 5.57760 5.59842 5.62630 6.12505 6.49634 6.93371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.373 4.373 3 C -0.137 4.137 4 C -0.134 4.134 5 Si 1.282 2.718 6 C -0.511 4.511 7 C -0.509 4.509 8 O -0.610 6.610 9 C 0.100 3.900 10 C -0.158 4.158 11 C 0.049 3.951 12 N -0.465 5.465 13 C 0.310 3.690 14 C -0.180 4.180 15 C -0.022 4.022 16 C -0.156 4.156 17 C -0.072 4.072 18 O -0.546 6.546 19 Si 0.937 3.063 20 H -0.245 1.245 21 H -0.246 1.246 22 H -0.252 1.252 23 C 0.127 3.873 24 N -0.515 5.515 25 C 0.027 3.973 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.060 0.940 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.060 0.940 33 H 0.053 0.947 34 H 0.054 0.946 35 H 0.065 0.935 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.066 0.934 41 H 0.069 0.931 42 H 0.097 0.903 43 H 0.087 0.913 44 H 0.060 0.940 45 H 0.096 0.904 46 H 0.141 0.859 47 H 0.141 0.859 48 H 0.078 0.922 49 H 0.381 0.619 50 H 0.151 0.849 51 H 0.099 0.901 52 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.232 -1.314 2.229 2.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.417 4.417 3 C -0.194 4.194 4 C -0.191 4.191 5 Si 1.414 2.586 6 C -0.613 4.613 7 C -0.611 4.611 8 O -0.568 6.568 9 C 0.042 3.958 10 C -0.196 4.196 11 C -0.077 4.077 12 N -0.183 5.183 13 C 0.078 3.922 14 C -0.202 4.202 15 C -0.048 4.048 16 C -0.159 4.159 17 C -0.183 4.183 18 O -0.352 6.352 19 Si 0.759 3.241 20 H -0.169 1.169 21 H -0.170 1.170 22 H -0.176 1.176 23 C -0.030 4.030 24 N -0.228 5.228 25 C -0.099 4.099 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.079 0.921 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.084 0.916 36 H 0.093 0.907 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.085 0.915 41 H 0.087 0.913 42 H 0.115 0.885 43 H 0.105 0.895 44 H 0.079 0.921 45 H 0.114 0.886 46 H 0.159 0.841 47 H 0.159 0.841 48 H 0.096 0.904 49 H 0.229 0.771 50 H 0.168 0.832 51 H 0.117 0.883 52 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 0.230 -0.394 1.011 1.109 hybrid contribution 0.807 -0.227 1.290 1.538 sum 1.037 -0.621 2.301 2.599 Atomic orbital electron populations 1.21515 0.93773 1.02089 1.01781 1.25763 1.00721 1.02577 1.12643 1.21560 1.00753 0.94944 1.02147 1.21510 1.00563 1.00292 0.96728 0.76806 0.63228 0.53573 0.65010 1.27050 1.07142 1.09411 1.17704 1.27117 1.24889 1.04682 1.04434 1.85402 1.78647 1.45919 1.46816 1.22684 0.93666 0.92757 0.86662 1.23405 0.98441 0.96358 1.01392 1.23118 0.85824 0.99286 0.99425 1.60766 1.06678 1.32397 1.18507 1.19982 0.92024 0.91747 0.88416 1.21598 1.04023 0.97928 0.96700 1.21325 0.92797 0.98097 0.92593 1.20124 1.01260 0.98394 0.96147 1.24542 0.97742 1.06435 0.89564 1.86500 1.35381 1.91265 1.22019 0.85866 0.77020 0.80189 0.81003 1.16865 1.16956 1.17628 1.22339 0.97008 0.93018 0.90661 1.67413 1.16397 1.31057 1.07914 1.23142 0.96515 0.86447 1.03840 0.92721 0.92780 0.92078 0.92537 0.92476 0.92543 0.92096 0.92801 0.92732 0.91591 0.90719 0.90751 0.90765 0.90781 0.91504 0.91289 0.88478 0.89488 0.92107 0.88580 0.84143 0.84125 0.90401 0.77106 0.83230 0.88310 0.87433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.06 7.85 37.16 0.29 0.23 16 2 C -0.37 0.00 0.53 -90.62 -0.05 -0.05 16 3 C -0.14 0.05 7.85 37.16 0.29 0.34 16 4 C -0.13 -0.03 7.85 37.16 0.29 0.26 16 5 Si 1.28 -0.80 8.14 -169.99 -1.38 -2.19 16 6 C -0.51 -0.02 8.59 101.05 0.87 0.84 16 7 C -0.51 0.35 8.20 101.05 0.83 1.18 16 8 O -0.61 -0.49 8.31 -35.23 -0.29 -0.78 16 9 C 0.10 0.05 2.83 -24.91 -0.07 -0.02 16 10 C -0.16 0.11 6.33 -24.60 -0.16 -0.05 16 11 C 0.05 -0.02 6.08 -2.30 -0.01 -0.03 16 12 N -0.47 -0.84 5.20 -169.99 -0.88 -1.72 16 13 C 0.31 0.80 6.15 -155.01 -0.95 -0.15 16 14 C -0.18 -0.20 9.38 -39.23 -0.37 -0.56 16 15 C -0.02 -0.02 9.83 -39.32 -0.39 -0.40 16 16 C -0.16 -0.19 5.39 -104.46 -0.56 -0.76 16 17 C -0.07 0.07 2.81 36.01 0.10 0.17 16 18 O -0.55 0.31 12.81 -35.23 -0.45 -0.14 16 19 Si 0.94 -0.96 25.16 -169.99 -4.28 -5.24 16 20 H -0.25 -0.08 7.05 56.52 0.40 0.31 16 21 H -0.25 0.07 7.11 56.52 0.40 0.47 16 22 H -0.25 0.25 7.11 56.52 0.40 0.65 16 23 C 0.13 0.28 9.84 -17.57 -0.17 0.11 16 24 N -0.51 -1.76 7.95 -12.44 -0.10 -1.85 16 25 C 0.03 0.05 6.54 -2.83 -0.02 0.03 16 26 H 0.05 0.00 7.79 -51.93 -0.40 -0.41 16 27 H 0.05 0.03 8.14 -51.93 -0.42 -0.39 16 28 H 0.06 0.04 7.96 -51.93 -0.41 -0.37 16 29 H 0.06 -0.06 7.79 -51.92 -0.40 -0.46 16 30 H 0.06 0.00 8.14 -51.93 -0.42 -0.42 16 31 H 0.06 -0.05 7.79 -51.93 -0.40 -0.45 16 32 H 0.06 0.03 7.96 -51.93 -0.41 -0.38 16 33 H 0.05 0.03 8.14 -51.93 -0.42 -0.40 16 34 H 0.05 -0.02 7.79 -51.93 -0.40 -0.43 16 35 H 0.06 0.01 7.14 -51.93 -0.37 -0.37 16 36 H 0.07 -0.03 7.79 -51.92 -0.40 -0.43 16 37 H 0.07 0.03 7.79 -51.93 -0.40 -0.38 16 38 H 0.07 -0.05 7.79 -51.93 -0.40 -0.45 16 39 H 0.07 -0.06 7.79 -51.93 -0.40 -0.47 16 40 H 0.07 -0.07 6.81 -51.93 -0.35 -0.42 16 41 H 0.07 -0.02 6.24 -51.93 -0.32 -0.34 16 42 H 0.10 -0.05 8.14 -51.93 -0.42 -0.47 16 43 H 0.09 -0.17 6.74 -51.93 -0.35 -0.52 16 44 H 0.06 -0.03 7.78 -51.93 -0.40 -0.43 16 45 H 0.10 -0.16 8.14 -51.93 -0.42 -0.59 16 46 H 0.14 -0.11 7.98 -52.49 -0.42 -0.53 16 47 H 0.14 -0.16 8.06 -52.49 -0.42 -0.58 16 48 H 0.08 -0.22 7.96 -51.93 -0.41 -0.63 16 49 H 0.38 -1.87 8.74 45.56 0.40 -1.47 16 50 H 0.15 0.11 4.87 -52.48 -0.26 -0.15 16 51 H 0.10 0.24 8.06 -51.93 -0.42 -0.18 16 52 H 0.11 0.29 5.91 -51.93 -0.31 -0.01 16 LS Contribution 400.14 15.07 6.03 6.03 Total: 0.00 -5.39 400.14 -10.05 -15.45 By element: Atomic # 1 Polarization: -2.07 SS G_CDS: -8.62 Total: -10.69 kcal Atomic # 6 Polarization: 1.23 SS G_CDS: -0.08 Total: 1.15 kcal Atomic # 7 Polarization: -2.59 SS G_CDS: -0.98 Total: -3.58 kcal Atomic # 8 Polarization: -0.18 SS G_CDS: -0.74 Total: -0.93 kcal Atomic # 14 Polarization: -1.77 SS G_CDS: -5.66 Total: -7.43 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -5.39 -10.05 -15.45 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_12102092_13915762.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.831 kcal (2) G-P(sol) polarization free energy of solvation -5.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds