Wall clock time and date at job start Mon Mar 8 2021 05:29:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46897 * 2 1 4 4 C 1.53006 * 109.46599 * 240.00408 * 2 1 3 5 5 Si 1.86293 * 109.47384 * 120.00596 * 2 1 3 6 6 C 1.86302 * 109.47066 * 299.99710 * 5 2 1 7 7 C 1.86305 * 109.47126 * 180.02562 * 5 2 1 8 8 O 1.63099 * 109.47516 * 59.99707 * 5 2 1 9 9 C 1.42900 * 114.00028 * 179.97438 * 8 5 2 10 10 C 1.55133 * 110.71038 * 263.59973 * 9 8 5 11 11 C 1.54902 * 101.65556 * 205.96566 * 10 9 8 12 12 N 1.47849 * 104.79550 * 37.06931 * 11 10 9 13 13 C 1.39007 * 110.99981 * 213.63555 * 12 11 10 14 14 C 1.39093 * 119.70524 * 300.82408 * 13 12 11 15 15 C 1.38338 * 119.09731 * 179.70696 * 14 13 12 16 16 C 1.38841 * 118.50489 * 0.55000 * 15 14 13 17 17 C 1.50706 * 120.33392 * 179.76358 * 16 15 14 18 18 O 1.42895 * 109.47147 * 64.72539 * 17 16 15 19 19 Si 1.86299 * 109.46748 * 184.72181 * 17 16 15 20 20 H 1.48505 * 109.47505 * 299.99883 * 19 17 16 21 21 H 1.48503 * 109.47188 * 60.00070 * 19 17 16 22 22 H 1.48506 * 109.47139 * 179.97438 * 19 17 16 23 23 C 1.38058 * 119.32775 * 359.48678 * 16 15 14 24 24 N 1.31945 * 120.85688 * 0.23434 * 23 16 15 25 25 C 1.47443 * 108.56704 * 335.90764 * 12 11 10 26 26 H 1.09002 * 109.46897 * 299.99596 * 1 2 3 27 27 H 1.08994 * 109.47570 * 59.99906 * 1 2 3 28 28 H 1.08999 * 109.47181 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46697 * 180.02562 * 3 2 1 30 30 H 1.09002 * 109.47135 * 300.00040 * 3 2 1 31 31 H 1.08996 * 109.46858 * 60.00905 * 3 2 1 32 32 H 1.08999 * 109.46987 * 299.99668 * 4 2 1 33 33 H 1.08994 * 109.47416 * 59.99591 * 4 2 1 34 34 H 1.09000 * 109.46793 * 179.97438 * 4 2 1 35 35 H 1.08994 * 109.47384 * 180.02562 * 6 5 2 36 36 H 1.09007 * 109.46903 * 299.99914 * 6 5 2 37 37 H 1.08994 * 109.47320 * 60.00081 * 6 5 2 38 38 H 1.09002 * 109.46993 * 299.99708 * 7 5 2 39 39 H 1.08999 * 109.47344 * 59.99420 * 7 5 2 40 40 H 1.09005 * 109.46940 * 180.02562 * 7 5 2 41 41 H 1.08998 * 110.76199 * 26.80643 * 9 8 5 42 42 H 1.09003 * 110.98804 * 324.05598 * 10 9 8 43 43 H 1.09003 * 110.98878 * 87.87091 * 10 9 8 44 44 H 1.09005 * 110.37357 * 278.24235 * 11 10 9 45 45 H 1.09000 * 110.37355 * 155.89556 * 11 10 9 46 46 H 1.07999 * 120.45062 * 359.97438 * 14 13 12 47 47 H 1.08001 * 120.74964 * 180.29014 * 15 14 13 48 48 H 1.09000 * 109.47318 * 304.71652 * 17 16 15 49 49 H 0.96700 * 113.99916 * 179.97438 * 18 17 16 50 50 H 1.08003 * 119.57841 * 180.24979 * 23 16 15 51 51 H 1.08997 * 109.88868 * 120.39464 * 25 12 11 52 52 H 1.09000 * 109.88500 * 241.42207 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2494 5 14 2.1511 -0.8783 1.5210 6 6 1.5302 -0.0002 3.0422 7 6 4.0141 -0.8776 1.5213 8 8 1.6074 -2.4161 1.5210 9 6 2.0297 -3.1818 2.6512 10 6 3.2885 -4.0203 2.3064 11 6 3.1668 -5.1945 3.3094 12 7 1.7175 -5.4765 3.3864 13 6 1.3586 -5.8954 4.6624 14 6 1.9464 -7.0332 5.2051 15 6 1.5845 -7.4352 6.4783 16 6 0.6349 -6.6895 7.1638 17 6 0.2063 -7.0934 8.5510 18 8 1.3155 -6.9786 9.4445 19 14 -1.1711 -5.9779 9.1247 20 1 -0.6941 -4.5717 9.1437 21 1 -2.3239 -6.0971 8.1961 22 1 -1.5939 -6.3762 10.4914 23 6 0.0915 -5.5711 6.5639 24 7 0.4598 -5.2078 5.3501 25 6 0.9811 -4.2578 3.0036 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6767 1.9562 0.8900 32 1 1.6766 -1.7489 -1.2494 33 1 1.6765 -0.2074 -2.1393 34 1 3.1299 -0.7208 -1.2496 35 1 1.8939 -0.5138 3.9321 36 1 1.8936 1.0275 3.0422 37 1 0.4402 -0.0002 3.0423 38 1 4.3778 -1.3911 0.6312 39 1 4.3771 0.1502 1.5215 40 1 4.3775 -1.3920 2.4110 41 1 2.2202 -2.5345 3.5071 42 1 3.2488 -4.3795 1.2780 43 1 4.1993 -3.4482 2.4837 44 1 3.5485 -4.8997 4.2869 45 1 3.7040 -6.0675 2.9386 46 1 2.6786 -7.5926 4.6418 47 1 2.0275 -8.3118 6.9274 48 1 -0.1439 -8.1255 8.5371 49 1 1.1118 -7.2228 10.3577 50 1 -0.6446 -4.9858 7.0950 51 1 0.3526 -4.4613 2.1366 52 1 0.3650 -3.9198 3.8369 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_12102092_13915762.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:29:09 Heat of formation + Delta-G solvation = -67.604843 kcal Electronic energy + Delta-G solvation = -28207.064653 eV Core-core repulsion = 24523.458926 eV Total energy + Delta-G solvation = -3683.605727 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.194 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.97897 -39.99000 -37.89934 -36.96989 -36.83229 -33.78311 -33.09902 -30.80000 -29.59295 -29.25315 -29.04498 -27.85082 -27.39988 -26.38815 -24.80730 -23.40706 -22.11101 -21.79174 -20.40379 -18.96299 -18.51348 -18.30595 -17.69107 -16.73526 -16.54244 -15.99231 -15.84109 -15.62037 -15.30737 -15.11108 -14.95940 -14.80034 -14.66653 -14.50663 -14.30782 -14.15599 -14.00161 -13.66514 -13.61259 -13.48276 -13.38844 -13.19918 -13.15575 -12.96651 -12.92295 -12.66506 -12.41890 -12.40206 -12.13134 -12.10313 -11.97846 -11.74330 -11.68789 -11.43639 -11.30376 -10.94865 -10.80640 -10.52114 -10.33581 -10.24724 -10.07669 -9.14313 -0.04063 0.23562 1.15053 1.42715 1.43526 1.49247 1.76353 1.89827 2.08135 2.35613 2.46414 2.71950 3.26863 3.45028 3.51243 3.64249 3.80242 3.89988 3.96656 4.04711 4.11358 4.11707 4.19476 4.20753 4.30178 4.45824 4.47823 4.58568 4.67240 4.67719 4.70417 4.73595 4.74746 4.80201 4.81203 4.83091 4.87588 4.89807 4.94501 4.99366 5.08304 5.08540 5.09256 5.19020 5.20403 5.33511 5.40050 5.44250 5.46320 5.53893 5.55294 5.58291 5.64171 6.04565 6.81463 6.85921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.379 4.379 3 C -0.141 4.141 4 C -0.136 4.136 5 Si 1.306 2.694 6 C -0.521 4.521 7 C -0.511 4.511 8 O -0.622 6.622 9 C 0.098 3.902 10 C -0.154 4.154 11 C 0.048 3.952 12 N -0.472 5.472 13 C 0.293 3.707 14 C -0.180 4.180 15 C -0.025 4.025 16 C -0.162 4.162 17 C -0.065 4.065 18 O -0.561 6.561 19 Si 0.964 3.036 20 H -0.271 1.271 21 H -0.261 1.261 22 H -0.248 1.248 23 C 0.107 3.893 24 N -0.538 5.538 25 C 0.026 3.974 26 H 0.057 0.943 27 H 0.050 0.950 28 H 0.054 0.946 29 H 0.065 0.935 30 H 0.051 0.949 31 H 0.061 0.939 32 H 0.055 0.945 33 H 0.048 0.952 34 H 0.063 0.937 35 H 0.064 0.936 36 H 0.079 0.921 37 H 0.066 0.934 38 H 0.076 0.924 39 H 0.078 0.922 40 H 0.072 0.928 41 H 0.075 0.925 42 H 0.095 0.905 43 H 0.103 0.897 44 H 0.062 0.938 45 H 0.112 0.888 46 H 0.159 0.841 47 H 0.162 0.838 48 H 0.102 0.898 49 H 0.400 0.600 50 H 0.154 0.846 51 H 0.086 0.914 52 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.566 -2.139 2.790 4.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.422 4.422 3 C -0.198 4.198 4 C -0.193 4.193 5 Si 1.437 2.563 6 C -0.621 4.621 7 C -0.614 4.614 8 O -0.581 6.581 9 C 0.040 3.960 10 C -0.191 4.191 11 C -0.077 4.077 12 N -0.191 5.191 13 C 0.061 3.939 14 C -0.202 4.202 15 C -0.051 4.051 16 C -0.165 4.165 17 C -0.177 4.177 18 O -0.371 6.371 19 Si 0.789 3.211 20 H -0.196 1.196 21 H -0.186 1.186 22 H -0.171 1.171 23 C -0.050 4.050 24 N -0.252 5.252 25 C -0.101 4.101 26 H 0.076 0.924 27 H 0.069 0.931 28 H 0.074 0.926 29 H 0.084 0.916 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.074 0.926 33 H 0.067 0.933 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.098 0.902 37 H 0.086 0.914 38 H 0.095 0.905 39 H 0.097 0.903 40 H 0.091 0.909 41 H 0.093 0.907 42 H 0.114 0.886 43 H 0.122 0.878 44 H 0.080 0.920 45 H 0.130 0.870 46 H 0.177 0.823 47 H 0.180 0.820 48 H 0.120 0.880 49 H 0.251 0.749 50 H 0.171 0.829 51 H 0.104 0.896 52 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 1.547 -1.225 1.597 2.539 hybrid contribution 0.343 0.046 1.131 1.183 sum 1.890 -1.178 2.728 3.522 Atomic orbital electron populations 1.21549 0.94451 1.01720 1.01791 1.25859 1.00237 1.03048 1.13031 1.21608 1.01413 0.94605 1.02181 1.21536 1.01161 0.99968 0.96665 0.76394 0.63364 0.52632 0.63939 1.27167 1.06785 1.09961 1.18232 1.27097 1.24251 1.05164 1.04856 1.85391 1.79102 1.46615 1.46969 1.22718 0.93762 0.92636 0.86859 1.23414 0.98368 0.96142 1.01224 1.23233 0.84736 1.00093 0.99656 1.60826 1.07760 1.32158 1.18319 1.20235 0.92409 0.92471 0.88782 1.21832 1.04001 0.97395 0.97002 1.21620 0.92476 0.98560 0.92429 1.20402 1.01026 0.97875 0.97242 1.24477 0.97235 1.07560 0.88403 1.86450 1.35623 1.91528 1.23462 0.85488 0.76352 0.78633 0.80636 1.19615 1.18564 1.17142 1.22542 0.97757 0.93931 0.90739 1.67379 1.17175 1.32000 1.08615 1.23057 0.96967 0.87298 1.02757 0.92376 0.93130 0.92647 0.91580 0.92977 0.92039 0.92564 0.93264 0.91817 0.91702 0.90192 0.91431 0.90506 0.90309 0.90936 0.90725 0.88599 0.87827 0.91991 0.87014 0.82331 0.82032 0.87999 0.74941 0.82940 0.89579 0.88766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.27 7.85 71.98 0.56 0.29 16 2 C -0.38 -0.16 0.53 -10.79 -0.01 -0.17 16 3 C -0.14 0.09 7.85 71.98 0.56 0.66 16 4 C -0.14 -0.12 7.85 71.98 0.56 0.45 16 5 Si 1.31 -1.36 8.14 68.60 0.56 -0.80 16 6 C -0.52 -0.34 8.59 113.37 0.97 0.63 16 7 C -0.51 1.16 8.20 113.37 0.93 2.09 16 8 O -0.62 -1.48 8.31 -148.98 -1.24 -2.72 16 9 C 0.10 0.17 2.83 31.77 0.09 0.26 16 10 C -0.15 0.26 6.33 31.98 0.20 0.47 16 11 C 0.05 -0.05 6.08 86.77 0.53 0.48 16 12 N -0.47 -2.07 5.20 -691.74 -3.60 -5.67 16 13 C 0.29 1.76 6.15 133.04 0.82 2.58 16 14 C -0.18 -0.34 9.38 22.50 0.21 -0.13 16 15 C -0.03 -0.02 9.83 22.44 0.22 0.20 16 16 C -0.16 -0.41 5.39 -19.76 -0.11 -0.52 16 17 C -0.07 0.17 2.81 71.24 0.20 0.37 16 18 O -0.56 1.23 12.81 -148.98 -1.91 -0.68 16 19 Si 0.96 -1.61 25.16 68.60 1.73 0.12 16 20 H -0.27 -0.64 7.05 99.48 0.70 0.06 16 21 H -0.26 -0.15 7.11 99.48 0.71 0.56 16 22 H -0.25 0.63 7.11 99.48 0.71 1.34 16 23 C 0.11 0.63 9.84 84.63 0.83 1.46 16 24 N -0.54 -4.57 7.95 -193.26 -1.54 -6.10 16 25 C 0.03 0.14 6.54 86.65 0.57 0.71 16 26 H 0.06 0.06 7.79 -2.39 -0.02 0.04 16 27 H 0.05 0.12 8.14 -2.39 -0.02 0.10 16 28 H 0.05 0.16 7.96 -2.39 -0.02 0.14 16 29 H 0.07 -0.17 7.79 -2.38 -0.02 -0.19 16 30 H 0.05 0.02 8.14 -2.39 -0.02 0.00 16 31 H 0.06 -0.11 7.79 -2.39 -0.02 -0.13 16 32 H 0.06 0.10 7.96 -2.39 -0.02 0.08 16 33 H 0.05 0.08 8.14 -2.39 -0.02 0.06 16 34 H 0.06 -0.07 7.79 -2.39 -0.02 -0.09 16 35 H 0.06 0.05 7.14 -2.39 -0.02 0.03 16 36 H 0.08 -0.05 7.79 -2.38 -0.02 -0.07 16 37 H 0.07 0.13 7.79 -2.39 -0.02 0.11 16 38 H 0.08 -0.19 7.79 -2.39 -0.02 -0.20 16 39 H 0.08 -0.23 7.79 -2.39 -0.02 -0.25 16 40 H 0.07 -0.23 6.81 -2.38 -0.02 -0.25 16 41 H 0.08 0.01 6.24 -2.39 -0.01 0.00 16 42 H 0.10 -0.12 8.14 -2.39 -0.02 -0.14 16 43 H 0.10 -0.53 6.74 -2.39 -0.02 -0.55 16 44 H 0.06 -0.07 7.78 -2.38 -0.02 -0.09 16 45 H 0.11 -0.49 8.14 -2.39 -0.02 -0.51 16 46 H 0.16 -0.41 7.98 -2.91 -0.02 -0.44 16 47 H 0.16 -0.64 8.06 -2.91 -0.02 -0.66 16 48 H 0.10 -0.74 7.96 -2.39 -0.02 -0.76 16 49 H 0.40 -4.45 8.74 -74.06 -0.65 -5.10 16 50 H 0.15 0.54 4.87 -2.91 -0.01 0.53 16 51 H 0.09 0.62 8.06 -2.39 -0.02 0.60 16 52 H 0.09 0.75 5.91 -2.39 -0.01 0.73 16 Total: 0.00 -13.19 400.14 2.15 -11.05 By element: Atomic # 1 Polarization: -6.02 SS G_CDS: 0.99 Total: -5.03 kcal Atomic # 6 Polarization: 2.67 SS G_CDS: 7.15 Total: 9.82 kcal Atomic # 7 Polarization: -6.63 SS G_CDS: -5.13 Total: -11.77 kcal Atomic # 8 Polarization: -0.25 SS G_CDS: -3.15 Total: -3.40 kcal Atomic # 14 Polarization: -2.96 SS G_CDS: 2.28 Total: -0.68 kcal Total: -13.19 2.15 -11.05 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_12102092_13915762.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.557 kcal (2) G-P(sol) polarization free energy of solvation -13.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -11.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds