Wall clock time and date at job start Mon Mar 8 2021 05:29:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46819 * 2 1 4 4 C 1.52996 * 109.47485 * 239.99832 * 2 1 3 5 5 Si 1.86294 * 109.47009 * 119.99376 * 2 1 3 6 6 C 1.86299 * 109.47571 * 300.00311 * 5 2 1 7 7 C 1.86300 * 109.47200 * 180.02562 * 5 2 1 8 8 O 1.63103 * 109.47087 * 60.00479 * 5 2 1 9 9 C 1.42904 * 114.00086 * 179.97438 * 8 5 2 10 10 C 1.55142 * 110.70353 * 205.05185 * 9 8 5 11 11 C 1.54906 * 101.65084 * 205.96630 * 10 9 8 12 12 N 1.47845 * 104.79701 * 37.07095 * 11 10 9 13 13 C 1.38618 * 110.99896 * 213.63828 * 12 11 10 14 14 N 1.29693 * 124.94908 * 120.84484 * 13 12 11 15 15 C 1.32121 * 116.86181 * 179.71411 * 14 13 12 16 16 C 1.33322 * 114.58378 * 0.52019 * 15 14 13 17 17 C 1.50696 * 125.95682 * 179.78902 * 16 15 14 18 18 O 1.42903 * 109.47389 * 119.68539 * 17 16 15 19 19 Si 1.86301 * 109.46719 * 359.68785 * 17 16 15 20 20 H 1.48506 * 109.47302 * 179.97438 * 19 17 16 21 21 H 1.48503 * 109.47334 * 60.00029 * 19 17 16 22 22 H 1.48500 * 109.47376 * 300.00026 * 19 17 16 23 23 S 1.70960 * 124.94889 * 300.84181 * 13 12 11 24 24 C 1.47439 * 108.56667 * 335.90440 * 12 11 10 25 25 H 1.09001 * 109.47635 * 300.00182 * 1 2 3 26 26 H 1.09002 * 109.46879 * 60.00577 * 1 2 3 27 27 H 1.08997 * 109.47162 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47122 * 180.02562 * 3 2 1 29 29 H 1.09002 * 109.46924 * 299.99395 * 3 2 1 30 30 H 1.08996 * 109.47601 * 60.00097 * 3 2 1 31 31 H 1.08997 * 109.46833 * 300.00094 * 4 2 1 32 32 H 1.09002 * 109.47396 * 59.99908 * 4 2 1 33 33 H 1.08998 * 109.47713 * 179.97438 * 4 2 1 34 34 H 1.09002 * 109.47598 * 179.97438 * 6 5 2 35 35 H 1.08997 * 109.46909 * 299.99840 * 6 5 2 36 36 H 1.09006 * 109.46828 * 59.99755 * 6 5 2 37 37 H 1.09001 * 109.47370 * 300.00397 * 7 5 2 38 38 H 1.08997 * 109.47236 * 60.00186 * 7 5 2 39 39 H 1.09005 * 109.47432 * 180.02562 * 7 5 2 40 40 H 1.08997 * 110.76641 * 328.25199 * 9 8 5 41 41 H 1.08998 * 110.98815 * 324.05524 * 10 9 8 42 42 H 1.08997 * 110.99224 * 87.87360 * 10 9 8 43 43 H 1.09003 * 110.37433 * 278.24275 * 11 10 9 44 44 H 1.08996 * 110.37688 * 155.90341 * 11 10 9 45 45 H 1.07996 * 122.70478 * 180.34030 * 15 14 13 46 46 H 1.09001 * 109.47332 * 239.69176 * 17 16 15 47 47 H 0.96699 * 113.99816 * 300.00301 * 18 17 16 48 48 H 1.09000 * 109.89223 * 120.40127 * 24 12 11 49 49 H 1.09002 * 109.88998 * 241.58568 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 14 2.1509 -0.8780 1.5212 6 6 1.5299 0.0002 3.0423 7 6 4.0139 -0.8774 1.5216 8 8 1.6073 -2.4158 1.5213 9 6 2.0295 -3.1815 2.6516 10 6 2.0406 -4.6959 2.3151 11 6 1.8390 -5.3289 3.7145 12 7 0.8971 -4.4233 4.4063 13 6 1.1689 -4.3671 5.7644 14 7 1.4697 -3.2880 6.4179 15 6 1.6934 -3.4175 7.7135 16 6 1.5868 -4.6645 8.1729 17 6 1.7921 -5.1023 9.6002 18 8 0.5889 -5.6936 10.0949 19 14 2.2333 -3.6246 10.6455 20 1 2.4350 -4.0558 12.0522 21 1 1.1322 -2.6299 10.5864 22 1 3.4836 -3.0100 10.1315 23 16 1.1564 -5.7102 6.8221 24 6 0.9944 -3.0864 3.7923 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0276 0.0005 28 1 3.1300 1.4426 -0.0005 29 1 1.6766 1.9563 -0.8901 30 1 1.6766 1.9564 0.8899 31 1 1.6767 -1.7489 -1.2491 32 1 1.6768 -0.2075 -2.1392 33 1 3.1300 -0.7209 -1.2494 34 1 1.8929 -0.5138 3.9324 35 1 1.8932 1.0278 3.0422 36 1 0.4399 0.0002 3.0422 37 1 4.3777 -1.3910 0.6317 38 1 4.3769 0.1504 1.5218 39 1 4.3773 -1.3915 2.4115 40 1 3.0115 -2.8556 2.9942 41 1 1.2181 -4.9536 1.6479 42 1 2.9973 -4.9936 1.8861 43 1 2.7867 -5.3727 4.2513 44 1 1.4081 -6.3257 3.6217 45 1 1.9454 -2.5811 8.3486 46 1 2.6004 -5.8323 9.6437 47 1 -0.1740 -5.0995 10.0856 48 1 0.0252 -2.7916 3.3900 49 1 1.3264 -2.3606 4.5346 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_12102092_15704118.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:29:21 Heat of formation + Delta-G solvation = -69.613795 kcal Electronic energy + Delta-G solvation = -26809.592186 eV Core-core repulsion = 23215.051590 eV Total energy + Delta-G solvation = -3594.540595 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 344.150 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.57295 -39.94326 -38.00309 -37.07495 -36.86128 -32.94287 -30.88505 -30.13397 -29.28596 -28.91787 -27.89120 -27.40288 -26.71693 -24.91924 -22.97969 -22.53162 -20.48656 -20.35543 -19.86227 -18.39598 -17.87055 -17.59073 -16.67969 -16.41682 -16.17099 -15.92335 -15.71297 -15.50818 -15.16562 -14.94427 -14.79789 -14.60724 -14.47081 -14.05817 -13.89768 -13.73559 -13.62202 -13.47405 -13.29757 -13.20172 -13.00824 -12.97034 -12.95596 -12.87745 -12.45701 -12.42890 -12.21698 -12.17669 -11.99588 -11.82014 -11.70058 -11.59737 -11.26372 -11.08048 -10.62147 -10.57001 -10.40200 -10.20126 -10.10590 -9.21624 -0.37808 0.03016 0.62771 1.23208 1.34823 1.36221 1.42318 1.67129 1.70051 1.84482 1.99811 2.38898 2.49439 3.24468 3.32563 3.39424 3.61737 3.72646 3.82683 3.96518 4.08977 4.09281 4.12513 4.26961 4.39642 4.43626 4.51431 4.52852 4.63362 4.66092 4.70910 4.72260 4.75541 4.78478 4.78817 4.83199 4.92614 4.97389 4.99713 5.07843 5.08182 5.17473 5.29346 5.31701 5.39716 5.41934 5.50264 5.52120 5.61300 5.68250 6.39877 6.65208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.373 4.373 3 C -0.137 4.137 4 C -0.134 4.134 5 Si 1.280 2.720 6 C -0.510 4.510 7 C -0.511 4.511 8 O -0.608 6.608 9 C 0.098 3.902 10 C -0.126 4.126 11 C 0.039 3.961 12 N -0.436 5.436 13 C 0.212 3.788 14 N -0.516 5.516 15 C 0.065 3.935 16 C -0.284 4.284 17 C -0.042 4.042 18 O -0.537 6.537 19 Si 0.958 3.042 20 H -0.246 1.246 21 H -0.247 1.247 22 H -0.247 1.247 23 S 0.191 5.809 24 C 0.009 3.991 25 H 0.054 0.946 26 H 0.053 0.947 27 H 0.060 0.940 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.060 0.940 32 H 0.053 0.947 33 H 0.054 0.946 34 H 0.069 0.931 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.075 0.925 39 H 0.065 0.935 40 H 0.073 0.927 41 H 0.099 0.901 42 H 0.090 0.910 43 H 0.065 0.935 44 H 0.102 0.898 45 H 0.172 0.828 46 H 0.121 0.879 47 H 0.379 0.621 48 H 0.102 0.898 49 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.824 -0.555 -0.053 1.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.417 4.417 3 C -0.194 4.194 4 C -0.191 4.191 5 Si 1.412 2.588 6 C -0.613 4.613 7 C -0.612 4.612 8 O -0.566 6.566 9 C 0.040 3.960 10 C -0.164 4.164 11 C -0.088 4.088 12 N -0.157 5.157 13 C -0.157 4.157 14 N -0.237 5.237 15 C -0.088 4.088 16 C -0.407 4.407 17 C -0.154 4.154 18 O -0.342 6.342 19 Si 0.777 3.223 20 H -0.169 1.169 21 H -0.170 1.170 22 H -0.170 1.170 23 S 0.445 5.555 24 C -0.120 4.120 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.079 0.921 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.088 0.912 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.094 0.906 39 H 0.084 0.916 40 H 0.091 0.909 41 H 0.117 0.883 42 H 0.108 0.892 43 H 0.084 0.916 44 H 0.120 0.880 45 H 0.189 0.811 46 H 0.139 0.861 47 H 0.226 0.774 48 H 0.120 0.880 49 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 1.576 -1.333 -0.168 2.071 hybrid contribution 0.555 1.685 0.280 1.796 sum 2.132 0.353 0.111 2.164 Atomic orbital electron populations 1.21514 0.93733 1.02057 1.01837 1.25754 1.00736 1.02606 1.12559 1.21560 1.00751 0.94915 1.02200 1.21515 1.00568 1.00265 0.96786 0.76851 0.63096 0.53627 0.65259 1.27138 1.07088 1.09482 1.17546 1.27035 1.25032 1.04803 1.04372 1.85434 1.78973 1.46019 1.46192 1.22714 0.95959 0.92575 0.84749 1.22909 1.04551 0.92843 0.96121 1.23387 0.94111 0.97230 0.94053 1.60653 1.46463 1.11820 0.96789 1.25283 0.99479 0.93753 0.97156 1.66721 1.19409 1.29623 1.07922 1.21422 1.00605 0.96136 0.90618 1.26376 1.15842 0.96943 1.01556 1.24444 0.91613 1.09066 0.90315 1.86534 1.19190 1.42882 1.85559 0.85607 0.81644 0.75450 0.79562 1.16929 1.17033 1.17002 1.84102 1.64544 1.09663 0.97197 1.23733 1.01990 0.89221 0.97022 0.92664 0.92765 0.92118 0.92554 0.92455 0.92474 0.92129 0.92754 0.92744 0.91153 0.90779 0.90791 0.90829 0.90604 0.91595 0.90940 0.88257 0.89153 0.91635 0.87987 0.81103 0.86094 0.77359 0.87980 0.87709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.01 7.85 37.16 0.29 0.28 16 2 C -0.37 0.10 0.53 -90.62 -0.05 0.05 16 3 C -0.14 0.07 7.85 37.16 0.29 0.36 16 4 C -0.13 0.01 7.85 37.16 0.29 0.30 16 5 Si 1.28 -1.13 8.14 -169.99 -1.38 -2.51 16 6 C -0.51 0.09 8.14 101.05 0.82 0.91 16 7 C -0.51 0.27 8.57 101.05 0.87 1.13 16 8 O -0.61 -0.08 8.34 -35.23 -0.29 -0.37 16 9 C 0.10 -0.03 2.86 -24.91 -0.07 -0.10 16 10 C -0.13 0.18 6.80 -24.59 -0.17 0.02 16 11 C 0.04 -0.04 6.38 -2.30 -0.01 -0.06 16 12 N -0.44 -0.48 5.25 -172.17 -0.90 -1.39 16 13 C 0.21 0.41 6.49 -87.67 -0.57 -0.16 16 14 N -0.52 -1.40 8.69 -15.21 -0.13 -1.53 16 15 C 0.06 0.08 10.07 -19.14 -0.19 -0.11 16 16 C -0.28 -0.12 5.93 -36.03 -0.21 -0.34 16 17 C -0.04 0.04 3.08 36.00 0.11 0.15 16 18 O -0.54 0.11 12.88 -35.23 -0.45 -0.35 16 19 Si 0.96 -1.40 25.77 -169.99 -4.38 -5.78 16 20 H -0.25 0.05 7.11 56.52 0.40 0.45 16 21 H -0.25 0.27 7.11 56.52 0.40 0.68 16 22 H -0.25 0.23 7.11 56.52 0.40 0.63 16 23 S 0.19 0.13 22.88 -107.50 -2.46 -2.33 16 24 C 0.01 0.01 5.58 -2.84 -0.02 -0.01 16 25 H 0.05 -0.02 7.79 -51.93 -0.40 -0.42 16 26 H 0.05 0.02 8.14 -51.93 -0.42 -0.41 16 27 H 0.06 0.02 7.96 -51.93 -0.41 -0.40 16 28 H 0.06 -0.06 7.79 -51.93 -0.40 -0.47 16 29 H 0.06 -0.01 8.14 -51.93 -0.42 -0.43 16 30 H 0.06 -0.06 7.79 -51.93 -0.40 -0.46 16 31 H 0.06 0.00 7.96 -51.93 -0.41 -0.41 16 32 H 0.05 0.01 8.14 -51.93 -0.42 -0.41 16 33 H 0.05 -0.03 7.79 -51.93 -0.40 -0.44 16 34 H 0.07 0.02 6.52 -51.93 -0.34 -0.32 16 35 H 0.07 -0.04 7.79 -51.93 -0.40 -0.44 16 36 H 0.07 0.00 7.79 -51.93 -0.40 -0.40 16 37 H 0.07 -0.04 7.79 -51.93 -0.40 -0.44 16 38 H 0.07 -0.06 7.79 -51.93 -0.40 -0.46 16 39 H 0.06 -0.04 7.12 -51.93 -0.37 -0.41 16 40 H 0.07 -0.09 6.31 -51.93 -0.33 -0.41 16 41 H 0.10 -0.11 8.14 -51.93 -0.42 -0.54 16 42 H 0.09 -0.26 8.14 -51.93 -0.42 -0.68 16 43 H 0.07 -0.10 7.79 -51.93 -0.40 -0.51 16 44 H 0.10 -0.23 8.14 -51.93 -0.42 -0.66 16 45 H 0.17 -0.09 5.85 -52.49 -0.31 -0.39 16 46 H 0.12 -0.23 7.96 -51.93 -0.41 -0.64 16 47 H 0.38 -1.21 8.70 45.56 0.40 -0.82 16 48 H 0.10 0.12 8.06 -51.93 -0.42 -0.30 16 49 H 0.10 0.17 4.95 -51.93 -0.26 -0.09 16 LS Contribution 391.58 15.07 5.90 5.90 Total: 0.00 -4.96 391.58 -10.56 -15.52 By element: Atomic # 1 Polarization: -1.75 SS G_CDS: -7.84 Total: -9.59 kcal Atomic # 6 Polarization: 1.04 SS G_CDS: 1.38 Total: 2.42 kcal Atomic # 7 Polarization: -1.88 SS G_CDS: -1.04 Total: -2.92 kcal Atomic # 8 Polarization: 0.03 SS G_CDS: -0.75 Total: -0.72 kcal Atomic # 14 Polarization: -2.53 SS G_CDS: -5.76 Total: -8.29 kcal Atomic # 16 Polarization: 0.13 SS G_CDS: -2.46 Total: -2.33 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -4.96 -10.56 -15.52 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_12102092_15704118.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.093 kcal (2) G-P(sol) polarization free energy of solvation -4.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds