Wall clock time and date at job start Mon Mar 8 2021 05:29:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46819 * 2 1 4 4 C 1.52996 * 109.47485 * 239.99832 * 2 1 3 5 5 Si 1.86294 * 109.47009 * 119.99376 * 2 1 3 6 6 C 1.86299 * 109.47571 * 300.00311 * 5 2 1 7 7 C 1.86300 * 109.47200 * 180.02562 * 5 2 1 8 8 O 1.63103 * 109.47087 * 60.00479 * 5 2 1 9 9 C 1.42904 * 114.00086 * 179.97438 * 8 5 2 10 10 C 1.55142 * 110.70353 * 205.05185 * 9 8 5 11 11 C 1.54906 * 101.65084 * 205.96630 * 10 9 8 12 12 N 1.47845 * 104.79701 * 37.07095 * 11 10 9 13 13 C 1.38618 * 110.99896 * 213.63828 * 12 11 10 14 14 N 1.29693 * 124.94908 * 120.84484 * 13 12 11 15 15 C 1.32121 * 116.86181 * 179.71411 * 14 13 12 16 16 C 1.33322 * 114.58378 * 0.52019 * 15 14 13 17 17 C 1.50696 * 125.95682 * 179.78902 * 16 15 14 18 18 O 1.42903 * 109.47389 * 119.68539 * 17 16 15 19 19 Si 1.86301 * 109.46719 * 359.68785 * 17 16 15 20 20 H 1.48506 * 109.47302 * 179.97438 * 19 17 16 21 21 H 1.48503 * 109.47334 * 60.00029 * 19 17 16 22 22 H 1.48500 * 109.47376 * 300.00026 * 19 17 16 23 23 S 1.70960 * 124.94889 * 300.84181 * 13 12 11 24 24 C 1.47439 * 108.56667 * 335.90440 * 12 11 10 25 25 H 1.09001 * 109.47635 * 300.00182 * 1 2 3 26 26 H 1.09002 * 109.46879 * 60.00577 * 1 2 3 27 27 H 1.08997 * 109.47162 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47122 * 180.02562 * 3 2 1 29 29 H 1.09002 * 109.46924 * 299.99395 * 3 2 1 30 30 H 1.08996 * 109.47601 * 60.00097 * 3 2 1 31 31 H 1.08997 * 109.46833 * 300.00094 * 4 2 1 32 32 H 1.09002 * 109.47396 * 59.99908 * 4 2 1 33 33 H 1.08998 * 109.47713 * 179.97438 * 4 2 1 34 34 H 1.09002 * 109.47598 * 179.97438 * 6 5 2 35 35 H 1.08997 * 109.46909 * 299.99840 * 6 5 2 36 36 H 1.09006 * 109.46828 * 59.99755 * 6 5 2 37 37 H 1.09001 * 109.47370 * 300.00397 * 7 5 2 38 38 H 1.08997 * 109.47236 * 60.00186 * 7 5 2 39 39 H 1.09005 * 109.47432 * 180.02562 * 7 5 2 40 40 H 1.08997 * 110.76641 * 328.25199 * 9 8 5 41 41 H 1.08998 * 110.98815 * 324.05524 * 10 9 8 42 42 H 1.08997 * 110.99224 * 87.87360 * 10 9 8 43 43 H 1.09003 * 110.37433 * 278.24275 * 11 10 9 44 44 H 1.08996 * 110.37688 * 155.90341 * 11 10 9 45 45 H 1.07996 * 122.70478 * 180.34030 * 15 14 13 46 46 H 1.09001 * 109.47332 * 239.69176 * 17 16 15 47 47 H 0.96699 * 113.99816 * 300.00301 * 18 17 16 48 48 H 1.09000 * 109.89223 * 120.40127 * 24 12 11 49 49 H 1.09002 * 109.88998 * 241.58568 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 14 2.1509 -0.8780 1.5212 6 6 1.5299 0.0002 3.0423 7 6 4.0139 -0.8774 1.5216 8 8 1.6073 -2.4158 1.5213 9 6 2.0295 -3.1815 2.6516 10 6 2.0406 -4.6959 2.3151 11 6 1.8390 -5.3289 3.7145 12 7 0.8971 -4.4233 4.4063 13 6 1.1689 -4.3671 5.7644 14 7 1.4697 -3.2880 6.4179 15 6 1.6934 -3.4175 7.7135 16 6 1.5868 -4.6645 8.1729 17 6 1.7921 -5.1023 9.6002 18 8 0.5889 -5.6936 10.0949 19 14 2.2333 -3.6246 10.6455 20 1 2.4350 -4.0558 12.0522 21 1 1.1322 -2.6299 10.5864 22 1 3.4836 -3.0100 10.1315 23 16 1.1564 -5.7102 6.8221 24 6 0.9944 -3.0864 3.7923 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0276 0.0005 28 1 3.1300 1.4426 -0.0005 29 1 1.6766 1.9563 -0.8901 30 1 1.6766 1.9564 0.8899 31 1 1.6767 -1.7489 -1.2491 32 1 1.6768 -0.2075 -2.1392 33 1 3.1300 -0.7209 -1.2494 34 1 1.8929 -0.5138 3.9324 35 1 1.8932 1.0278 3.0422 36 1 0.4399 0.0002 3.0422 37 1 4.3777 -1.3910 0.6317 38 1 4.3769 0.1504 1.5218 39 1 4.3773 -1.3915 2.4115 40 1 3.0115 -2.8556 2.9942 41 1 1.2181 -4.9536 1.6479 42 1 2.9973 -4.9936 1.8861 43 1 2.7867 -5.3727 4.2513 44 1 1.4081 -6.3257 3.6217 45 1 1.9454 -2.5811 8.3486 46 1 2.6004 -5.8323 9.6437 47 1 -0.1740 -5.0995 10.0856 48 1 0.0252 -2.7916 3.3900 49 1 1.3264 -2.3606 4.5346 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_12102092_15704118.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:29:20 Heat of formation + Delta-G solvation = -63.158754 kcal Electronic energy + Delta-G solvation = -26809.312274 eV Core-core repulsion = 23215.051590 eV Total energy + Delta-G solvation = -3594.260684 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 344.150 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.59474 -39.94303 -37.96002 -37.05715 -36.83852 -32.91747 -30.87150 -30.11604 -29.24244 -28.90172 -27.85714 -27.39153 -26.71178 -24.92443 -22.95922 -22.47104 -20.48940 -20.35882 -19.86970 -18.35439 -17.84230 -17.60545 -16.66752 -16.37467 -16.12245 -15.89714 -15.70771 -15.48249 -15.16263 -14.92054 -14.77856 -14.58027 -14.43401 -14.04313 -13.86570 -13.69340 -13.61482 -13.42257 -13.24517 -13.18202 -12.99009 -12.95873 -12.93442 -12.80032 -12.42315 -12.39835 -12.15084 -12.13354 -11.95649 -11.78172 -11.67498 -11.56465 -11.21643 -11.09177 -10.65217 -10.55419 -10.37853 -10.24360 -10.08360 -9.24391 -0.42217 0.00457 0.60135 1.30632 1.40752 1.47325 1.52354 1.62095 1.75266 1.92602 2.05506 2.42300 2.50503 3.27741 3.43511 3.45877 3.65631 3.75231 3.89543 4.05072 4.11783 4.12013 4.20417 4.29673 4.41728 4.45908 4.55897 4.60367 4.68724 4.71659 4.74401 4.76425 4.78089 4.81582 4.83121 4.86436 4.96046 4.99653 5.03474 5.08767 5.09354 5.20620 5.32076 5.33996 5.40477 5.44351 5.53937 5.57149 5.62385 5.64866 6.57740 6.62304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.378 4.378 3 C -0.142 4.142 4 C -0.137 4.137 5 Si 1.308 2.692 6 C -0.518 4.518 7 C -0.516 4.516 8 O -0.617 6.617 9 C 0.095 3.905 10 C -0.123 4.123 11 C 0.037 3.963 12 N -0.445 5.445 13 C 0.200 3.800 14 N -0.538 5.538 15 C 0.051 3.949 16 C -0.281 4.281 17 C -0.043 4.043 18 O -0.550 6.550 19 Si 0.995 3.005 20 H -0.264 1.264 21 H -0.252 1.252 22 H -0.253 1.253 23 S 0.200 5.800 24 C 0.009 3.991 25 H 0.057 0.943 26 H 0.049 0.951 27 H 0.057 0.943 28 H 0.063 0.937 29 H 0.052 0.948 30 H 0.061 0.939 31 H 0.058 0.942 32 H 0.049 0.951 33 H 0.061 0.939 34 H 0.064 0.936 35 H 0.076 0.924 36 H 0.068 0.932 37 H 0.074 0.926 38 H 0.078 0.922 39 H 0.066 0.934 40 H 0.082 0.918 41 H 0.096 0.904 42 H 0.107 0.893 43 H 0.070 0.930 44 H 0.114 0.886 45 H 0.183 0.817 46 H 0.131 0.869 47 H 0.390 0.610 48 H 0.093 0.907 49 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.454 -1.001 0.012 2.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.421 4.421 3 C -0.199 4.199 4 C -0.194 4.194 5 Si 1.439 2.561 6 C -0.619 4.619 7 C -0.618 4.618 8 O -0.575 6.575 9 C 0.037 3.963 10 C -0.161 4.161 11 C -0.089 4.089 12 N -0.167 5.167 13 C -0.168 4.168 14 N -0.259 5.259 15 C -0.101 4.101 16 C -0.404 4.404 17 C -0.155 4.155 18 O -0.357 6.357 19 Si 0.816 3.184 20 H -0.188 1.188 21 H -0.176 1.176 22 H -0.177 1.177 23 S 0.455 5.545 24 C -0.120 4.120 25 H 0.077 0.923 26 H 0.069 0.931 27 H 0.076 0.924 28 H 0.082 0.918 29 H 0.071 0.929 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.068 0.932 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.096 0.904 36 H 0.087 0.913 37 H 0.093 0.907 38 H 0.097 0.903 39 H 0.086 0.914 40 H 0.099 0.901 41 H 0.114 0.886 42 H 0.126 0.874 43 H 0.089 0.911 44 H 0.132 0.868 45 H 0.200 0.800 46 H 0.149 0.851 47 H 0.240 0.760 48 H 0.111 0.889 49 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 2.192 -1.774 -0.112 2.822 hybrid contribution 0.320 1.820 0.280 1.869 sum 2.512 0.047 0.168 2.518 Atomic orbital electron populations 1.21546 0.94237 1.01856 1.01818 1.25840 1.00383 1.02940 1.12915 1.21614 1.01310 0.94734 1.02237 1.21547 1.01055 1.00125 0.96699 0.76357 0.62728 0.52932 0.64133 1.27246 1.06829 1.09864 1.17947 1.27079 1.25063 1.05100 1.04538 1.85432 1.79246 1.46477 1.46323 1.22797 0.95852 0.93402 0.84279 1.22934 1.05378 0.91844 0.95911 1.23506 0.94061 0.97362 0.93975 1.60698 1.47164 1.12106 0.96714 1.25461 0.99641 0.94076 0.97581 1.66731 1.20165 1.30353 1.08658 1.21650 1.01073 0.96898 0.90479 1.26565 1.15087 0.96650 1.02052 1.24579 0.91710 1.09714 0.89476 1.86504 1.19890 1.43807 1.85505 0.85069 0.80899 0.74549 0.77910 1.18784 1.17554 1.17651 1.84012 1.64336 1.09192 0.97002 1.23676 1.01896 0.89181 0.97217 0.92350 0.93145 0.92414 0.91778 0.92917 0.91999 0.92291 0.93197 0.92029 0.91667 0.90441 0.91278 0.90659 0.90286 0.91435 0.90061 0.88584 0.87413 0.91132 0.86829 0.80002 0.85148 0.76015 0.88894 0.88668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.12 7.85 71.98 0.56 0.44 16 2 C -0.38 0.11 0.53 -10.79 -0.01 0.11 16 3 C -0.14 0.13 7.85 71.98 0.56 0.70 16 4 C -0.14 -0.01 7.85 71.98 0.56 0.56 16 5 Si 1.31 -2.09 8.14 68.60 0.56 -1.54 16 6 C -0.52 -0.17 8.14 113.37 0.92 0.75 16 7 C -0.52 0.78 8.57 113.37 0.97 1.75 16 8 O -0.62 -0.27 8.34 -148.98 -1.24 -1.52 16 9 C 0.09 -0.05 2.86 31.78 0.09 0.04 16 10 C -0.12 0.41 6.80 31.98 0.22 0.63 16 11 C 0.04 -0.09 6.38 86.77 0.55 0.46 16 12 N -0.44 -1.19 5.25 -698.62 -3.67 -4.86 16 13 C 0.20 0.86 6.49 179.32 1.16 2.03 16 14 N -0.54 -3.28 8.69 -202.03 -1.76 -5.03 16 15 C 0.05 0.14 10.07 83.54 0.84 0.98 16 16 C -0.28 -0.23 5.93 24.57 0.15 -0.08 16 17 C -0.04 0.10 3.08 71.23 0.22 0.32 16 18 O -0.55 0.42 12.88 -148.98 -1.92 -1.50 16 19 Si 0.99 -3.08 25.77 68.60 1.77 -1.31 16 20 H -0.26 0.07 7.11 99.48 0.71 0.77 16 21 H -0.25 0.61 7.11 99.48 0.71 1.32 16 22 H -0.25 0.54 7.11 99.48 0.71 1.25 16 23 S 0.20 0.28 22.88 -56.49 -1.29 -1.01 16 24 C 0.01 0.02 5.58 86.65 0.48 0.51 16 25 H 0.06 0.00 7.79 -2.39 -0.02 -0.02 16 26 H 0.05 0.07 8.14 -2.39 -0.02 0.05 16 27 H 0.06 0.08 7.96 -2.39 -0.02 0.06 16 28 H 0.06 -0.16 7.79 -2.38 -0.02 -0.18 16 29 H 0.05 0.00 8.14 -2.39 -0.02 -0.02 16 30 H 0.06 -0.12 7.79 -2.39 -0.02 -0.14 16 31 H 0.06 0.02 7.96 -2.39 -0.02 0.00 16 32 H 0.05 0.04 8.14 -2.39 -0.02 0.02 16 33 H 0.06 -0.09 7.79 -2.39 -0.02 -0.11 16 34 H 0.06 0.09 6.52 -2.39 -0.02 0.08 16 35 H 0.08 -0.05 7.79 -2.39 -0.02 -0.07 16 36 H 0.07 0.08 7.79 -2.38 -0.02 0.06 16 37 H 0.07 -0.12 7.79 -2.39 -0.02 -0.14 16 38 H 0.08 -0.16 7.79 -2.39 -0.02 -0.18 16 39 H 0.07 -0.11 7.12 -2.38 -0.02 -0.13 16 40 H 0.08 -0.20 6.31 -2.39 -0.02 -0.22 16 41 H 0.10 -0.24 8.14 -2.39 -0.02 -0.26 16 42 H 0.11 -0.74 8.14 -2.39 -0.02 -0.76 16 43 H 0.07 -0.25 7.79 -2.39 -0.02 -0.27 16 44 H 0.11 -0.58 8.14 -2.39 -0.02 -0.60 16 45 H 0.18 -0.14 5.85 -2.91 -0.02 -0.16 16 46 H 0.13 -0.57 7.96 -2.39 -0.02 -0.59 16 47 H 0.39 -2.59 8.70 -74.06 -0.64 -3.23 16 48 H 0.09 0.36 8.06 -2.39 -0.02 0.34 16 49 H 0.10 0.43 4.95 -2.39 -0.01 0.42 16 Total: 0.00 -11.06 391.58 0.79 -10.27 By element: Atomic # 1 Polarization: -3.74 SS G_CDS: 1.04 Total: -2.70 kcal Atomic # 6 Polarization: 1.89 SS G_CDS: 7.30 Total: 9.19 kcal Atomic # 7 Polarization: -4.47 SS G_CDS: -5.42 Total: -9.90 kcal Atomic # 8 Polarization: 0.15 SS G_CDS: -3.16 Total: -3.01 kcal Atomic # 14 Polarization: -5.17 SS G_CDS: 2.33 Total: -2.85 kcal Atomic # 16 Polarization: 0.28 SS G_CDS: -1.29 Total: -1.01 kcal Total: -11.06 0.79 -10.27 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_12102092_15704118.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.886 kcal (2) G-P(sol) polarization free energy of solvation -11.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -10.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds