Wall clock time and date at job start Mon Mar 8 2021 05:29:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33327 * 125.94972 * 2 1 4 4 C 1.50698 * 122.71120 * 0.02562 * 3 2 1 5 5 O 1.42900 * 109.47252 * 329.99833 * 4 3 2 6 6 Si 1.86302 * 109.47282 * 209.99696 * 4 3 2 7 7 H 1.48498 * 109.46844 * 59.99774 * 6 4 3 8 8 H 1.48492 * 109.47084 * 180.02562 * 6 4 3 9 9 H 1.48500 * 109.46910 * 300.00072 * 6 4 3 10 10 N 1.32119 * 114.57682 * 179.75256 * 3 2 1 11 11 C 1.29684 * 116.86578 * 0.47790 * 10 3 2 12 12 N 1.38611 * 124.94802 * 179.81329 * 11 10 3 13 13 C 1.47899 * 111.00027 * 59.59344 * 12 11 10 14 14 C 1.53997 * 107.05889 * 145.84243 * 13 12 11 15 15 C 1.54593 * 105.13807 * 358.77516 * 14 13 12 16 16 O 1.42906 * 110.72554 * 219.68070 * 15 14 13 17 17 Si 1.63092 * 114.00130 * 268.55103 * 16 15 14 18 18 C 1.86304 * 109.47174 * 299.99515 * 17 16 15 19 19 C 1.86302 * 109.47406 * 59.99545 * 17 16 15 20 20 C 1.86297 * 109.47212 * 179.97438 * 17 16 15 21 21 C 1.53000 * 109.47290 * 59.99674 * 20 17 16 22 22 C 1.53001 * 109.47354 * 179.97438 * 20 17 16 23 23 C 1.53003 * 109.47159 * 299.99804 * 20 17 16 24 24 C 1.48538 * 111.00038 * 176.99107 * 12 11 10 25 25 S 1.70968 * 110.10154 * 359.54609 * 11 10 3 26 26 H 1.09000 * 109.47014 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.46966 * 299.97230 * 1 2 3 28 28 H 1.09001 * 109.47057 * 59.97219 * 1 2 3 29 29 H 1.09006 * 109.46980 * 89.99669 * 4 3 2 30 30 H 0.96703 * 114.00098 * 299.99824 * 5 4 3 31 31 H 1.09004 * 109.91646 * 26.49270 * 13 12 11 32 32 H 1.08998 * 109.92144 * 265.19661 * 13 12 11 33 33 H 1.09004 * 110.30998 * 117.69119 * 14 13 12 34 34 H 1.08998 * 110.30811 * 239.85930 * 14 13 12 35 35 H 1.09007 * 110.72450 * 96.40308 * 15 14 13 36 36 H 1.09005 * 109.46891 * 60.00561 * 18 17 16 37 37 H 1.08997 * 109.47386 * 179.97438 * 18 17 16 38 38 H 1.08996 * 109.46999 * 300.00579 * 18 17 16 39 39 H 1.08998 * 109.46974 * 60.00015 * 19 17 16 40 40 H 1.09006 * 109.47219 * 179.97438 * 19 17 16 41 41 H 1.08996 * 109.46956 * 300.00177 * 19 17 16 42 42 H 1.08998 * 109.47029 * 60.00226 * 21 20 17 43 43 H 1.08998 * 109.47530 * 179.97438 * 21 20 17 44 44 H 1.09006 * 109.47073 * 300.00312 * 21 20 17 45 45 H 1.09005 * 109.47279 * 60.00068 * 22 20 17 46 46 H 1.09003 * 109.46971 * 179.97438 * 22 20 17 47 47 H 1.08998 * 109.47128 * 299.99874 * 22 20 17 48 48 H 1.09006 * 109.46979 * 59.99825 * 23 20 17 49 49 H 1.08998 * 109.47000 * 179.97438 * 23 20 17 50 50 H 1.08995 * 109.46928 * 300.00220 * 23 20 17 51 51 H 1.09007 * 110.66246 * 318.71288 * 24 12 11 52 52 H 1.08993 * 110.66671 * 81.67438 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2898 1.0793 0.0000 4 6 1.7414 2.4830 0.0006 5 8 0.4810 2.5023 -0.6726 6 14 2.9320 3.6152 -0.8777 7 1 3.1117 3.1545 -2.2779 8 1 2.3919 4.9985 -0.8766 9 1 4.2417 3.5952 -0.1781 10 7 3.5850 0.8188 0.0052 11 6 3.9314 -0.4309 -0.0001 12 7 5.2384 -0.8925 0.0003 13 6 5.9686 -0.4158 1.1949 14 6 6.9529 -1.5297 1.5972 15 6 6.7108 -2.6689 0.5805 16 8 6.7656 -3.9428 1.2257 17 14 8.2476 -4.6235 1.2251 18 6 8.8160 -4.8724 -0.5316 19 6 9.4450 -3.5057 2.1127 20 6 8.1752 -6.2699 2.0940 21 6 7.1918 -7.1882 1.3656 22 6 9.5654 -6.9089 2.0929 23 6 7.7087 -6.0650 3.5368 24 6 5.2790 -2.3759 0.0661 25 16 2.5412 -1.4260 -0.0001 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5134 0.8902 28 1 -0.3633 0.5143 -0.8897 29 1 1.6095 2.8211 1.0284 30 1 0.5230 2.2128 -1.5943 31 1 5.2675 -0.2283 2.0083 32 1 6.5166 0.4956 0.9560 33 1 7.9797 -1.1711 1.5261 34 1 6.7409 -1.8745 2.6092 35 1 7.4318 -2.6174 -0.2355 36 1 8.8586 -3.9090 -1.0396 37 1 9.8066 -5.3270 -0.5320 38 1 8.1154 -5.5264 -1.0509 39 1 9.1125 -3.3602 3.1404 40 1 10.4354 -3.9610 2.1126 41 1 9.4874 -2.5424 1.6046 42 1 7.5241 -7.3342 0.3379 43 1 7.1497 -8.1516 1.8737 44 1 6.2012 -6.7331 1.3661 45 1 10.2663 -6.2548 2.6116 46 1 9.5230 -7.8719 2.6017 47 1 9.8973 -7.0549 1.0650 48 1 6.7182 -5.6100 3.5372 49 1 7.6659 -7.0283 4.0450 50 1 8.4092 -5.4108 4.0556 51 1 4.5339 -2.7503 0.7682 52 1 5.1263 -2.8091 -0.9223 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_12102092_15704122.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:29:31 Heat of formation + Delta-G solvation = -69.531359 kcal Electronic energy + Delta-G solvation = -28763.175503 eV Core-core repulsion = 25013.100863 eV Total energy + Delta-G solvation = -3750.074640 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 358.166 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.57565 -40.35949 -37.92221 -37.00850 -36.81867 -33.46572 -31.79441 -29.97300 -29.39899 -29.02111 -28.87213 -27.83406 -27.36977 -25.71454 -24.86712 -22.74276 -22.32890 -20.49736 -20.08996 -19.28902 -18.36572 -18.06986 -17.58699 -16.84812 -16.23809 -16.05349 -15.91071 -15.35720 -15.21312 -15.09138 -14.85788 -14.82832 -14.67992 -14.58914 -14.42571 -13.99293 -13.87024 -13.63694 -13.49950 -13.43333 -13.34453 -13.24013 -13.09469 -12.94464 -12.91010 -12.77414 -12.66480 -12.45352 -12.38823 -12.24667 -12.06353 -11.87275 -11.77341 -11.65503 -11.51741 -11.24620 -11.04922 -10.69928 -10.40488 -10.35422 -10.09281 -10.05718 -9.13280 -0.36447 0.10732 0.58184 1.10871 1.34927 1.47528 1.58280 1.64192 1.77778 2.03320 2.10746 2.22445 2.51879 3.23156 3.38337 3.45120 3.58529 3.86942 3.99462 4.03476 4.10977 4.13324 4.15951 4.23653 4.37701 4.47033 4.50332 4.57036 4.67169 4.73139 4.74969 4.77305 4.79425 4.80556 4.82314 4.83593 4.84244 4.87228 4.94848 4.97796 5.01295 5.10134 5.10329 5.11309 5.23083 5.27644 5.36125 5.42406 5.45660 5.49481 5.59248 5.62654 5.68266 6.50705 6.73352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C -0.212 4.212 3 C 0.023 3.977 4 C -0.033 4.033 5 O -0.536 6.536 6 Si 1.007 2.993 7 H -0.276 1.276 8 H -0.266 1.266 9 H -0.271 1.271 10 N -0.513 5.513 11 C 0.210 3.790 12 N -0.434 5.434 13 C 0.051 3.949 14 C -0.160 4.160 15 C 0.117 3.883 16 O -0.623 6.623 17 Si 1.315 2.685 18 C -0.520 4.520 19 C -0.516 4.516 20 C -0.382 4.382 21 C -0.138 4.138 22 C -0.142 4.142 23 C -0.137 4.137 24 C 0.024 3.976 25 S 0.124 5.876 26 H 0.068 0.932 27 H 0.081 0.919 28 H 0.097 0.903 29 H 0.134 0.866 30 H 0.389 0.611 31 H 0.055 0.945 32 H 0.095 0.905 33 H 0.105 0.895 34 H 0.096 0.904 35 H 0.099 0.901 36 H 0.071 0.929 37 H 0.077 0.923 38 H 0.070 0.930 39 H 0.072 0.928 40 H 0.076 0.924 41 H 0.075 0.925 42 H 0.060 0.940 43 H 0.047 0.953 44 H 0.057 0.943 45 H 0.064 0.936 46 H 0.049 0.951 47 H 0.062 0.938 48 H 0.057 0.943 49 H 0.046 0.954 50 H 0.061 0.939 51 H 0.078 0.922 52 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.591 -2.244 0.331 2.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.334 4.334 3 C -0.108 4.108 4 C -0.147 4.147 5 O -0.342 6.342 6 Si 0.832 3.168 7 H -0.201 1.201 8 H -0.191 1.191 9 H -0.196 1.196 10 N -0.234 5.234 11 C -0.160 4.160 12 N -0.156 5.156 13 C -0.076 4.076 14 C -0.198 4.198 15 C 0.059 3.941 16 O -0.582 6.582 17 Si 1.446 2.554 18 C -0.622 4.622 19 C -0.619 4.619 20 C -0.424 4.424 21 C -0.195 4.195 22 C -0.199 4.199 23 C -0.194 4.194 24 C -0.104 4.104 25 S 0.377 5.623 26 H 0.087 0.913 27 H 0.100 0.900 28 H 0.116 0.884 29 H 0.151 0.849 30 H 0.238 0.762 31 H 0.074 0.926 32 H 0.114 0.886 33 H 0.123 0.877 34 H 0.114 0.886 35 H 0.117 0.883 36 H 0.090 0.910 37 H 0.096 0.904 38 H 0.090 0.910 39 H 0.092 0.908 40 H 0.095 0.905 41 H 0.094 0.906 42 H 0.079 0.921 43 H 0.066 0.934 44 H 0.076 0.924 45 H 0.082 0.918 46 H 0.068 0.932 47 H 0.081 0.919 48 H 0.076 0.924 49 H 0.065 0.935 50 H 0.080 0.920 51 H 0.096 0.904 52 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 1.237 -2.047 0.100 2.394 hybrid contribution -0.025 -0.166 0.259 0.309 sum 1.213 -2.212 0.359 2.548 Atomic orbital electron populations 1.20334 0.84623 1.02741 1.04694 1.25794 1.02763 0.93287 1.11559 1.20575 0.86726 0.98515 1.05017 1.24308 0.92401 0.93866 1.04105 1.86513 1.28144 1.89550 1.29957 0.84788 0.76921 0.76737 0.78328 1.20066 1.19069 1.19597 1.66000 1.17945 1.18325 1.21180 1.25377 0.94998 0.92185 1.03393 1.61110 1.06068 1.09399 1.38985 1.22951 0.96080 0.99842 0.88764 1.23225 1.01101 0.94320 1.01121 1.22341 0.95841 0.81763 0.94168 1.85377 1.61089 1.34898 1.76794 0.76218 0.52140 0.62607 0.64458 1.27131 1.07088 1.05163 1.22817 1.27179 1.13470 1.11731 1.09473 1.25926 0.97939 1.15750 1.02834 1.21557 0.98802 0.99099 1.00073 1.21611 0.95214 1.00815 1.02244 1.21547 1.01232 1.01585 0.95070 1.23709 0.98977 0.83614 1.04069 1.84110 0.97485 1.10715 1.69994 0.91312 0.89999 0.88416 0.84871 0.76172 0.92646 0.88642 0.87653 0.88559 0.88341 0.90976 0.90355 0.91040 0.90845 0.90486 0.90635 0.92110 0.93425 0.92354 0.91751 0.93196 0.91854 0.92437 0.93463 0.92006 0.90405 0.86987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 0.13 8.91 71.24 0.63 0.77 16 2 C -0.21 -0.54 6.50 24.58 0.16 -0.38 16 3 C 0.02 0.11 5.91 41.40 0.24 0.35 16 4 C -0.03 -0.05 2.94 71.24 0.21 0.16 16 5 O -0.54 0.55 10.17 -148.98 -1.52 -0.97 16 6 Si 1.01 4.04 27.37 68.60 1.88 5.92 16 7 H -0.28 -1.80 7.11 99.48 0.71 -1.10 16 8 H -0.27 -1.23 7.11 99.48 0.71 -0.52 16 9 H -0.27 -2.26 7.11 99.48 0.71 -1.56 16 10 N -0.51 -4.19 8.86 -189.86 -1.68 -5.87 16 11 C 0.21 1.19 6.54 179.32 1.17 2.36 16 12 N -0.43 -1.31 5.36 -696.22 -3.73 -5.05 16 13 C 0.05 0.02 6.57 86.45 0.57 0.59 16 14 C -0.16 0.60 5.67 31.47 0.18 0.78 16 15 C 0.12 -0.35 2.97 31.80 0.09 -0.26 16 16 O -0.62 1.45 8.35 -148.98 -1.24 0.21 16 17 Si 1.32 -5.93 8.14 68.60 0.56 -5.38 16 18 C -0.52 1.84 8.57 113.37 0.97 2.81 16 19 C -0.52 2.32 8.14 113.37 0.92 3.24 16 20 C -0.38 0.80 0.53 -10.79 -0.01 0.80 16 21 C -0.14 0.13 7.85 71.98 0.56 0.70 16 22 C -0.14 0.35 7.85 71.98 0.56 0.92 16 23 C -0.14 0.15 7.85 71.98 0.56 0.72 16 24 C 0.02 -0.02 5.50 86.65 0.48 0.46 16 25 S 0.12 0.28 20.98 -56.49 -1.19 -0.91 16 26 H 0.07 -0.23 8.14 -2.39 -0.02 -0.25 16 27 H 0.08 -0.13 8.14 -2.39 -0.02 -0.15 16 28 H 0.10 -0.43 6.39 -2.39 -0.02 -0.44 16 29 H 0.13 -0.08 7.96 -2.38 -0.02 -0.10 16 30 H 0.39 -2.55 8.13 -74.06 -0.60 -3.15 16 31 H 0.05 0.11 7.75 -2.39 -0.02 0.09 16 32 H 0.10 0.07 8.14 -2.39 -0.02 0.05 16 33 H 0.11 -0.71 6.92 -2.39 -0.02 -0.73 16 34 H 0.10 -0.40 8.07 -2.39 -0.02 -0.42 16 35 H 0.10 -0.57 6.31 -2.38 -0.02 -0.58 16 36 H 0.07 -0.30 7.12 -2.38 -0.02 -0.32 16 37 H 0.08 -0.30 7.79 -2.39 -0.02 -0.32 16 38 H 0.07 -0.20 7.79 -2.39 -0.02 -0.22 16 39 H 0.07 -0.30 7.79 -2.39 -0.02 -0.32 16 40 H 0.08 -0.36 7.79 -2.38 -0.02 -0.38 16 41 H 0.07 -0.42 6.55 -2.39 -0.02 -0.44 16 42 H 0.06 -0.14 7.80 -2.39 -0.02 -0.16 16 43 H 0.05 0.01 8.14 -2.39 -0.02 -0.01 16 44 H 0.06 -0.04 7.97 -2.38 -0.02 -0.06 16 45 H 0.06 -0.26 7.79 -2.38 -0.02 -0.28 16 46 H 0.05 -0.05 8.14 -2.39 -0.02 -0.07 16 47 H 0.06 -0.24 7.79 -2.39 -0.02 -0.26 16 48 H 0.06 -0.04 7.97 -2.38 -0.02 -0.06 16 49 H 0.05 0.01 8.14 -2.39 -0.02 -0.01 16 50 H 0.06 -0.16 7.79 -2.39 -0.02 -0.18 16 51 H 0.08 -0.03 6.88 -2.38 -0.02 -0.04 16 52 H 0.11 -0.28 8.14 -2.39 -0.02 -0.30 16 Total: 0.00 -11.75 410.18 1.44 -10.30 By element: Atomic # 1 Polarization: -13.33 SS G_CDS: 1.04 Total: -12.28 kcal Atomic # 6 Polarization: 6.69 SS G_CDS: 7.32 Total: 14.01 kcal Atomic # 7 Polarization: -5.50 SS G_CDS: -5.41 Total: -10.91 kcal Atomic # 8 Polarization: 2.00 SS G_CDS: -2.76 Total: -0.76 kcal Atomic # 14 Polarization: -1.89 SS G_CDS: 2.44 Total: 0.54 kcal Atomic # 16 Polarization: 0.28 SS G_CDS: -1.19 Total: -0.91 kcal Total: -11.75 1.44 -10.30 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_12102092_15704122.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.227 kcal (2) G-P(sol) polarization free energy of solvation -11.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -10.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds