Wall clock time and date at job start Mon Mar 8 2021 05:32:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.46700 * 2 1 4 4 C 1.52993 * 109.47159 * 239.99908 * 2 1 3 5 5 Si 1.86300 * 109.47225 * 119.99792 * 2 1 3 6 6 C 1.86307 * 109.46968 * 300.00007 * 5 2 1 7 7 C 1.86302 * 109.46974 * 180.02562 * 5 2 1 8 8 O 1.63096 * 109.47118 * 60.00244 * 5 2 1 9 9 C 1.42902 * 113.99947 * 179.97438 * 8 5 2 10 10 C 1.55147 * 110.70402 * 91.45102 * 9 8 5 11 11 C 1.54908 * 101.65049 * 154.03442 * 10 9 8 12 12 N 1.47845 * 104.79717 * 322.93105 * 11 10 9 13 13 C 1.39158 * 110.99900 * 146.36075 * 12 11 10 14 14 C 1.39296 * 119.71551 * 59.16035 * 13 12 11 15 15 F 1.35106 * 120.47238 * 359.97438 * 14 13 12 16 16 C 1.38482 * 119.05726 * 179.97438 * 14 13 12 17 17 C 1.38857 * 118.48542 * 359.97438 * 16 14 13 18 18 C 1.50703 * 120.32538 * 179.97438 * 17 16 14 19 19 O 1.42901 * 109.47413 * 300.00013 * 18 17 16 20 20 Si 1.86302 * 109.46798 * 179.97438 * 18 17 16 21 21 H 1.48496 * 109.47312 * 60.00373 * 20 18 17 22 22 H 1.48503 * 109.46870 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.47228 * 299.99846 * 20 18 17 24 24 C 1.38026 * 119.34714 * 0.02562 * 17 16 14 25 25 N 1.31979 * 120.89317 * 359.74009 * 24 17 16 26 26 C 1.47439 * 108.56650 * 24.09802 * 12 11 10 27 27 H 1.08996 * 109.47104 * 300.00090 * 1 2 3 28 28 H 1.08995 * 109.46879 * 60.00308 * 1 2 3 29 29 H 1.09006 * 109.46674 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46548 * 180.02562 * 3 2 1 31 31 H 1.08999 * 109.46750 * 299.99571 * 3 2 1 32 32 H 1.08996 * 109.47416 * 60.00100 * 3 2 1 33 33 H 1.08999 * 109.47204 * 299.99901 * 4 2 1 34 34 H 1.09007 * 109.47278 * 59.99796 * 4 2 1 35 35 H 1.08996 * 109.47194 * 179.97438 * 4 2 1 36 36 H 1.08999 * 109.46527 * 179.97438 * 6 5 2 37 37 H 1.08999 * 109.47389 * 299.99938 * 6 5 2 38 38 H 1.09003 * 109.46808 * 60.00449 * 6 5 2 39 39 H 1.08996 * 109.46901 * 299.99840 * 7 5 2 40 40 H 1.08992 * 109.47177 * 59.99709 * 7 5 2 41 41 H 1.09003 * 109.46650 * 180.02562 * 7 5 2 42 42 H 1.09000 * 110.76802 * 328.25587 * 9 8 5 43 43 H 1.08996 * 110.99290 * 272.12871 * 10 9 8 44 44 H 1.09002 * 110.98631 * 35.95115 * 10 9 8 45 45 H 1.09005 * 110.37447 * 81.76012 * 11 10 9 46 46 H 1.08998 * 110.37529 * 204.10029 * 11 10 9 47 47 H 1.08004 * 120.75759 * 180.02562 * 16 14 13 48 48 H 1.09001 * 109.47149 * 60.00357 * 18 17 16 49 49 H 0.96704 * 113.99539 * 300.00094 * 19 18 17 50 50 H 1.07993 * 119.55322 * 180.02562 * 24 17 16 51 51 H 1.09003 * 109.88723 * 239.60536 * 26 12 11 52 52 H 1.08999 * 109.89041 * 118.41926 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 14 2.1511 -0.8782 1.5212 6 6 1.5300 0.0002 3.0423 7 6 4.0141 -0.8774 1.5215 8 8 1.6075 -2.4159 1.5212 9 6 2.0297 -3.1816 2.6515 10 6 0.9892 -3.0860 3.7984 11 6 1.2400 -4.4115 4.5596 12 7 1.5371 -5.4029 3.5038 13 6 2.4613 -6.3434 3.9487 14 6 2.1689 -7.1247 5.0643 15 9 0.9954 -6.9751 5.7170 16 6 3.0981 -8.0568 5.4949 17 6 4.2904 -8.1763 4.7932 18 6 5.3310 -9.1768 5.2259 19 8 5.7489 -8.8826 6.5604 20 14 6.7971 -9.0826 4.0803 21 1 7.3751 -7.7155 4.1274 22 1 7.8228 -10.0680 4.5070 23 1 6.3625 -9.3887 2.6938 24 6 4.5134 -7.3690 3.6961 25 7 3.6082 -6.4919 3.3049 26 6 2.0407 -4.6879 2.3168 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.1300 1.4426 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9564 0.8899 33 1 1.6767 -1.7489 -1.2492 34 1 1.6767 -0.2074 -2.1392 35 1 3.1300 -0.7208 -1.2494 36 1 1.8931 -0.5139 3.9322 37 1 1.8934 1.0278 3.0423 38 1 0.4400 0.0001 3.0423 39 1 4.3777 -1.3910 0.6315 40 1 4.3770 0.1503 1.5216 41 1 4.3774 -1.3917 2.4113 42 1 3.0118 -2.8557 2.9941 43 1 1.1894 -2.2253 4.4365 44 1 -0.0258 -3.0491 3.4026 45 1 2.0911 -4.3074 5.2327 46 1 0.3493 -4.7044 5.1154 47 1 2.8997 -8.6772 6.3564 48 1 4.9069 -10.1803 5.1908 49 1 6.1371 -8.0032 6.6660 50 1 5.4393 -7.4594 3.1476 51 1 1.3913 -4.8829 1.4633 52 1 3.0575 -5.0107 2.0931 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_12102092_17656566.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:32:03 Heat of formation + Delta-G solvation = -116.939789 kcal Electronic energy + Delta-G solvation = -30942.182711 eV Core-core repulsion = 26786.983684 eV Total energy + Delta-G solvation = -4155.199026 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 356.184 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.92533 -41.98077 -40.18010 -38.11761 -37.04273 -36.86038 -33.83251 -32.81902 -30.83927 -29.68337 -29.35503 -29.09747 -27.89620 -27.42861 -26.65205 -25.06784 -23.56195 -22.38069 -22.00087 -20.42916 -19.35562 -18.65944 -18.46962 -18.19452 -17.62001 -17.06532 -16.56939 -16.24415 -15.98878 -15.92784 -15.80996 -15.41438 -15.04760 -14.92561 -14.84067 -14.80488 -14.64768 -14.47289 -14.15911 -13.90918 -13.79628 -13.58276 -13.53293 -13.41417 -13.26490 -13.10814 -12.96985 -12.95388 -12.82134 -12.69372 -12.43883 -12.28986 -12.20640 -12.10302 -11.77858 -11.71562 -11.47726 -11.37379 -11.14266 -10.81410 -10.60471 -10.53146 -10.39115 -10.11287 -9.19238 -0.32341 -0.09992 0.97458 1.30534 1.34211 1.37356 1.69493 1.79010 1.99019 2.16345 2.36291 2.41917 3.00618 3.10783 3.26576 3.40731 3.45211 3.53528 3.68466 3.82865 3.87476 4.02800 4.08915 4.09849 4.15614 4.32633 4.34850 4.43689 4.54116 4.55555 4.59956 4.62992 4.64782 4.67819 4.72874 4.78115 4.80292 4.81604 4.82979 4.85652 4.97205 5.02061 5.07887 5.07975 5.17063 5.30569 5.31323 5.38350 5.41908 5.43838 5.48862 5.54169 5.57163 5.88965 6.36485 6.60442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.373 4.373 3 C -0.137 4.137 4 C -0.135 4.135 5 Si 1.282 2.718 6 C -0.510 4.510 7 C -0.511 4.511 8 O -0.609 6.609 9 C 0.100 3.900 10 C -0.160 4.160 11 C 0.046 3.954 12 N -0.461 5.461 13 C 0.288 3.712 14 C 0.040 3.960 15 F -0.121 7.121 16 C -0.057 4.057 17 C -0.174 4.174 18 C -0.073 4.073 19 O -0.536 6.536 20 Si 0.943 3.057 21 H -0.247 1.247 22 H -0.247 1.247 23 H -0.245 1.245 24 C 0.115 3.885 25 N -0.489 5.489 26 C 0.030 3.970 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.060 0.940 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.060 0.940 34 H 0.053 0.947 35 H 0.054 0.946 36 H 0.067 0.933 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.073 0.927 40 H 0.074 0.926 41 H 0.065 0.935 42 H 0.072 0.928 43 H 0.090 0.910 44 H 0.098 0.902 45 H 0.060 0.940 46 H 0.101 0.899 47 H 0.156 0.844 48 H 0.124 0.876 49 H 0.378 0.622 50 H 0.159 0.841 51 H 0.102 0.898 52 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.372 1.018 1.063 2.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.417 4.417 3 C -0.194 4.194 4 C -0.192 4.192 5 Si 1.414 2.586 6 C -0.612 4.612 7 C -0.613 4.613 8 O -0.567 6.567 9 C 0.042 3.958 10 C -0.198 4.198 11 C -0.079 4.079 12 N -0.179 5.179 13 C 0.054 3.946 14 C 0.015 3.985 15 F -0.100 7.100 16 C -0.084 4.084 17 C -0.178 4.178 18 C -0.184 4.184 19 O -0.341 6.341 20 Si 0.764 3.236 21 H -0.170 1.170 22 H -0.170 1.170 23 H -0.169 1.169 24 C -0.042 4.042 25 N -0.202 5.202 26 C -0.096 4.096 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.086 0.914 37 H 0.092 0.908 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.093 0.907 41 H 0.084 0.916 42 H 0.089 0.911 43 H 0.108 0.892 44 H 0.117 0.883 45 H 0.078 0.922 46 H 0.119 0.881 47 H 0.174 0.826 48 H 0.142 0.858 49 H 0.225 0.775 50 H 0.176 0.824 51 H 0.120 0.880 52 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 2.313 0.592 -0.397 2.420 hybrid contribution 0.147 0.817 1.240 1.492 sum 2.460 1.409 0.843 2.957 Atomic orbital electron populations 1.21513 0.93751 1.02064 1.01792 1.25763 1.00724 1.02580 1.12629 1.21561 1.00757 0.94925 1.02170 1.21516 1.00596 1.00306 0.96750 0.76801 0.63051 0.53564 0.65211 1.27154 1.07114 1.09476 1.17442 1.27040 1.25050 1.04720 1.04470 1.85401 1.78828 1.45888 1.46631 1.22689 0.96072 0.92394 0.84646 1.23492 1.02110 0.97000 0.97242 1.23176 1.02567 0.89491 0.92692 1.60772 1.35488 1.14621 1.06996 1.20084 0.88819 0.95609 0.90083 1.18082 0.84822 1.00594 0.94955 1.91541 1.44072 1.94694 1.79654 1.21432 0.91415 0.95782 0.99737 1.21130 0.97412 1.01219 0.98005 1.24896 1.02128 0.99871 0.91518 1.86545 1.82323 1.38973 1.26238 0.85769 0.77448 0.82028 0.78325 1.17047 1.17049 1.16861 1.22504 0.97536 0.90593 0.93591 1.67514 1.00555 1.20899 1.31200 1.23147 1.04017 0.90089 0.92395 0.92718 0.92772 0.92098 0.92547 0.92457 0.92520 0.92080 0.92763 0.92720 0.91436 0.90762 0.90721 0.90746 0.90665 0.91617 0.91082 0.89179 0.88336 0.92185 0.88086 0.82629 0.85829 0.77513 0.82379 0.87963 0.87313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.00 7.85 37.16 0.29 0.29 16 2 C -0.37 0.14 0.53 -90.62 -0.05 0.09 16 3 C -0.14 0.09 7.85 37.16 0.29 0.38 16 4 C -0.13 -0.01 7.85 37.15 0.29 0.28 16 5 Si 1.28 -1.47 8.14 -169.99 -1.38 -2.85 16 6 C -0.51 0.58 8.04 101.05 0.81 1.40 16 7 C -0.51 0.34 8.57 101.05 0.87 1.20 16 8 O -0.61 -0.17 8.34 -35.23 -0.29 -0.46 16 9 C 0.10 -0.01 2.85 -24.91 -0.07 -0.08 16 10 C -0.16 0.14 6.05 -24.59 -0.15 -0.01 16 11 C 0.05 0.00 5.59 -2.30 -0.01 -0.01 16 12 N -0.46 -0.81 5.14 -169.90 -0.87 -1.68 16 13 C 0.29 0.60 6.16 -154.84 -0.95 -0.36 16 14 C 0.04 0.06 7.02 -39.10 -0.27 -0.21 16 15 F -0.12 -0.29 15.75 2.25 0.04 -0.25 16 16 C -0.06 0.00 9.75 -39.26 -0.38 -0.38 16 17 C -0.17 0.15 5.40 -104.47 -0.56 -0.42 16 18 C -0.07 0.16 2.83 36.01 0.10 0.26 16 19 O -0.54 0.79 12.78 -35.23 -0.45 0.34 16 20 Si 0.94 -2.13 25.10 -169.99 -4.27 -6.40 16 21 H -0.25 0.55 7.11 56.52 0.40 0.95 16 22 H -0.25 0.16 7.11 56.52 0.40 0.56 16 23 H -0.25 0.41 7.11 56.52 0.40 0.81 16 24 C 0.12 0.00 9.84 -17.57 -0.17 -0.18 16 25 N -0.49 -0.87 7.95 -12.37 -0.10 -0.97 16 26 C 0.03 0.04 6.54 -2.84 -0.02 0.02 16 27 H 0.05 -0.04 7.79 -51.93 -0.40 -0.44 16 28 H 0.05 0.01 8.14 -51.93 -0.42 -0.41 16 29 H 0.06 0.02 7.97 -51.93 -0.41 -0.40 16 30 H 0.06 -0.07 7.79 -51.93 -0.40 -0.48 16 31 H 0.06 -0.02 8.14 -51.93 -0.42 -0.44 16 32 H 0.06 -0.07 7.79 -51.93 -0.40 -0.48 16 33 H 0.06 0.02 7.97 -51.93 -0.41 -0.39 16 34 H 0.05 0.02 8.14 -51.92 -0.42 -0.41 16 35 H 0.05 -0.03 7.79 -51.93 -0.40 -0.43 16 36 H 0.07 -0.10 6.34 -51.93 -0.33 -0.43 16 37 H 0.07 -0.10 7.79 -51.93 -0.40 -0.50 16 38 H 0.07 -0.07 7.79 -51.93 -0.40 -0.48 16 39 H 0.07 -0.03 7.79 -51.93 -0.40 -0.43 16 40 H 0.07 -0.07 7.79 -51.93 -0.40 -0.48 16 41 H 0.06 -0.05 7.12 -51.93 -0.37 -0.42 16 42 H 0.07 -0.08 6.31 -51.93 -0.33 -0.41 16 43 H 0.09 -0.21 6.26 -51.93 -0.33 -0.53 16 44 H 0.10 -0.06 8.14 -51.93 -0.42 -0.48 16 45 H 0.06 -0.03 7.79 -51.93 -0.40 -0.43 16 46 H 0.10 -0.02 7.58 -51.93 -0.39 -0.41 16 47 H 0.16 -0.20 8.06 -52.48 -0.42 -0.63 16 48 H 0.12 -0.37 7.96 -51.93 -0.41 -0.79 16 49 H 0.38 -1.75 8.70 45.56 0.40 -1.35 16 50 H 0.16 -0.29 4.88 -52.49 -0.26 -0.55 16 51 H 0.10 0.18 8.06 -51.93 -0.42 -0.24 16 52 H 0.11 0.16 5.91 -51.93 -0.31 -0.15 16 LS Contribution 403.02 15.07 6.07 6.07 Total: 0.00 -4.80 403.02 -9.37 -14.17 By element: Atomic # 1 Polarization: -2.14 SS G_CDS: -8.12 Total: -10.27 kcal Atomic # 6 Polarization: 2.28 SS G_CDS: 0.01 Total: 2.29 kcal Atomic # 7 Polarization: -1.68 SS G_CDS: -0.97 Total: -2.65 kcal Atomic # 8 Polarization: 0.62 SS G_CDS: -0.74 Total: -0.12 kcal Atomic # 9 Polarization: -0.29 SS G_CDS: 0.04 Total: -0.25 kcal Atomic # 14 Polarization: -3.60 SS G_CDS: -5.65 Total: -9.25 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -4.80 -9.37 -14.17 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_12102092_17656566.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.767 kcal (2) G-P(sol) polarization free energy of solvation -4.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds