Wall clock time and date at job start Mon Mar 8 2021 05:32:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.46700 * 2 1 4 4 C 1.52993 * 109.47159 * 239.99908 * 2 1 3 5 5 Si 1.86300 * 109.47225 * 119.99792 * 2 1 3 6 6 C 1.86307 * 109.46968 * 300.00007 * 5 2 1 7 7 C 1.86302 * 109.46974 * 180.02562 * 5 2 1 8 8 O 1.63096 * 109.47118 * 60.00244 * 5 2 1 9 9 C 1.42902 * 113.99947 * 179.97438 * 8 5 2 10 10 C 1.55147 * 110.70402 * 91.45102 * 9 8 5 11 11 C 1.54908 * 101.65049 * 154.03442 * 10 9 8 12 12 N 1.47845 * 104.79717 * 322.93105 * 11 10 9 13 13 C 1.39158 * 110.99900 * 146.36075 * 12 11 10 14 14 C 1.39296 * 119.71551 * 59.16035 * 13 12 11 15 15 F 1.35106 * 120.47238 * 359.97438 * 14 13 12 16 16 C 1.38482 * 119.05726 * 179.97438 * 14 13 12 17 17 C 1.38857 * 118.48542 * 359.97438 * 16 14 13 18 18 C 1.50703 * 120.32538 * 179.97438 * 17 16 14 19 19 O 1.42901 * 109.47413 * 300.00013 * 18 17 16 20 20 Si 1.86302 * 109.46798 * 179.97438 * 18 17 16 21 21 H 1.48496 * 109.47312 * 60.00373 * 20 18 17 22 22 H 1.48503 * 109.46870 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.47228 * 299.99846 * 20 18 17 24 24 C 1.38026 * 119.34714 * 0.02562 * 17 16 14 25 25 N 1.31979 * 120.89317 * 359.74009 * 24 17 16 26 26 C 1.47439 * 108.56650 * 24.09802 * 12 11 10 27 27 H 1.08996 * 109.47104 * 300.00090 * 1 2 3 28 28 H 1.08995 * 109.46879 * 60.00308 * 1 2 3 29 29 H 1.09006 * 109.46674 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46548 * 180.02562 * 3 2 1 31 31 H 1.08999 * 109.46750 * 299.99571 * 3 2 1 32 32 H 1.08996 * 109.47416 * 60.00100 * 3 2 1 33 33 H 1.08999 * 109.47204 * 299.99901 * 4 2 1 34 34 H 1.09007 * 109.47278 * 59.99796 * 4 2 1 35 35 H 1.08996 * 109.47194 * 179.97438 * 4 2 1 36 36 H 1.08999 * 109.46527 * 179.97438 * 6 5 2 37 37 H 1.08999 * 109.47389 * 299.99938 * 6 5 2 38 38 H 1.09003 * 109.46808 * 60.00449 * 6 5 2 39 39 H 1.08996 * 109.46901 * 299.99840 * 7 5 2 40 40 H 1.08992 * 109.47177 * 59.99709 * 7 5 2 41 41 H 1.09003 * 109.46650 * 180.02562 * 7 5 2 42 42 H 1.09000 * 110.76802 * 328.25587 * 9 8 5 43 43 H 1.08996 * 110.99290 * 272.12871 * 10 9 8 44 44 H 1.09002 * 110.98631 * 35.95115 * 10 9 8 45 45 H 1.09005 * 110.37447 * 81.76012 * 11 10 9 46 46 H 1.08998 * 110.37529 * 204.10029 * 11 10 9 47 47 H 1.08004 * 120.75759 * 180.02562 * 16 14 13 48 48 H 1.09001 * 109.47149 * 60.00357 * 18 17 16 49 49 H 0.96704 * 113.99539 * 300.00094 * 19 18 17 50 50 H 1.07993 * 119.55322 * 180.02562 * 24 17 16 51 51 H 1.09003 * 109.88723 * 239.60536 * 26 12 11 52 52 H 1.08999 * 109.89041 * 118.41926 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 14 2.1511 -0.8782 1.5212 6 6 1.5300 0.0002 3.0423 7 6 4.0141 -0.8774 1.5215 8 8 1.6075 -2.4159 1.5212 9 6 2.0297 -3.1816 2.6515 10 6 0.9892 -3.0860 3.7984 11 6 1.2400 -4.4115 4.5596 12 7 1.5371 -5.4029 3.5038 13 6 2.4613 -6.3434 3.9487 14 6 2.1689 -7.1247 5.0643 15 9 0.9954 -6.9751 5.7170 16 6 3.0981 -8.0568 5.4949 17 6 4.2904 -8.1763 4.7932 18 6 5.3310 -9.1768 5.2259 19 8 5.7489 -8.8826 6.5604 20 14 6.7971 -9.0826 4.0803 21 1 7.3751 -7.7155 4.1274 22 1 7.8228 -10.0680 4.5070 23 1 6.3625 -9.3887 2.6938 24 6 4.5134 -7.3690 3.6961 25 7 3.6082 -6.4919 3.3049 26 6 2.0407 -4.6879 2.3168 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.1300 1.4426 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9564 0.8899 33 1 1.6767 -1.7489 -1.2492 34 1 1.6767 -0.2074 -2.1392 35 1 3.1300 -0.7208 -1.2494 36 1 1.8931 -0.5139 3.9322 37 1 1.8934 1.0278 3.0423 38 1 0.4400 0.0001 3.0423 39 1 4.3777 -1.3910 0.6315 40 1 4.3770 0.1503 1.5216 41 1 4.3774 -1.3917 2.4113 42 1 3.0118 -2.8557 2.9941 43 1 1.1894 -2.2253 4.4365 44 1 -0.0258 -3.0491 3.4026 45 1 2.0911 -4.3074 5.2327 46 1 0.3493 -4.7044 5.1154 47 1 2.8997 -8.6772 6.3564 48 1 4.9069 -10.1803 5.1908 49 1 6.1371 -8.0032 6.6660 50 1 5.4393 -7.4594 3.1476 51 1 1.3913 -4.8829 1.4633 52 1 3.0575 -5.0107 2.0931 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_12102092_17656566.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:32:02 Heat of formation + Delta-G solvation = -109.592582 kcal Electronic energy + Delta-G solvation = -30941.864112 eV Core-core repulsion = 26786.983684 eV Total energy + Delta-G solvation = -4154.880428 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 356.184 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -50.02670 -41.99754 -40.16191 -38.01712 -37.00719 -36.82827 -33.80940 -32.82796 -30.81077 -29.67889 -29.28270 -29.03871 -27.84504 -27.39687 -26.57995 -25.07492 -23.53652 -22.35769 -22.00968 -20.40098 -19.34502 -18.67737 -18.43584 -18.18321 -17.57414 -17.10768 -16.54129 -16.11906 -15.95006 -15.90262 -15.76688 -15.40579 -15.02298 -14.91314 -14.80692 -14.76279 -14.64436 -14.48232 -14.09106 -13.87152 -13.74892 -13.52794 -13.51131 -13.34552 -13.19563 -13.10308 -12.95954 -12.92704 -12.73600 -12.59964 -12.40299 -12.13951 -12.12864 -12.01880 -11.73786 -11.68810 -11.43679 -11.33912 -11.12738 -10.81076 -10.59532 -10.44883 -10.32919 -10.06906 -9.22648 -0.33920 -0.10958 1.14736 1.42581 1.48302 1.53427 1.76818 1.94399 2.09539 2.16860 2.36656 2.46308 2.98774 3.11831 3.37316 3.44708 3.55614 3.60770 3.72902 3.87863 3.90027 4.06902 4.12212 4.12687 4.18985 4.34058 4.44296 4.45922 4.58335 4.64588 4.66868 4.67173 4.73264 4.76518 4.80526 4.82029 4.82764 4.83172 4.85860 4.89329 4.99983 5.03975 5.09057 5.09489 5.20929 5.29337 5.34463 5.40278 5.42354 5.44817 5.55691 5.58482 5.65258 5.84468 6.57638 6.68829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.380 4.380 3 C -0.141 4.141 4 C -0.138 4.138 5 Si 1.307 2.693 6 C -0.514 4.514 7 C -0.518 4.518 8 O -0.623 6.623 9 C 0.099 3.901 10 C -0.156 4.156 11 C 0.045 3.955 12 N -0.474 5.474 13 C 0.275 3.725 14 C 0.024 3.976 15 F -0.129 7.129 16 C -0.054 4.054 17 C -0.165 4.165 18 C -0.068 4.068 19 O -0.549 6.549 20 Si 0.973 3.027 21 H -0.245 1.245 22 H -0.270 1.270 23 H -0.253 1.253 24 C 0.110 3.890 25 N -0.504 5.504 26 C 0.030 3.970 27 H 0.062 0.938 28 H 0.047 0.953 29 H 0.055 0.945 30 H 0.062 0.938 31 H 0.050 0.950 32 H 0.064 0.936 33 H 0.055 0.945 34 H 0.048 0.952 35 H 0.059 0.941 36 H 0.074 0.926 37 H 0.078 0.922 38 H 0.073 0.927 39 H 0.069 0.931 40 H 0.079 0.921 41 H 0.068 0.932 42 H 0.084 0.916 43 H 0.107 0.893 44 H 0.094 0.906 45 H 0.065 0.935 46 H 0.100 0.900 47 H 0.168 0.832 48 H 0.134 0.866 49 H 0.391 0.609 50 H 0.175 0.825 51 H 0.089 0.911 52 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.061 1.269 1.913 3.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.423 4.423 3 C -0.198 4.198 4 C -0.195 4.195 5 Si 1.438 2.562 6 C -0.616 4.616 7 C -0.620 4.620 8 O -0.581 6.581 9 C 0.041 3.959 10 C -0.194 4.194 11 C -0.079 4.079 12 N -0.192 5.192 13 C 0.042 3.958 14 C 0.000 4.000 15 F -0.108 7.108 16 C -0.080 4.080 17 C -0.169 4.169 18 C -0.179 4.179 19 O -0.356 6.356 20 Si 0.796 3.204 21 H -0.168 1.168 22 H -0.195 1.195 23 H -0.177 1.177 24 C -0.047 4.047 25 N -0.217 5.217 26 C -0.097 4.097 27 H 0.081 0.919 28 H 0.067 0.933 29 H 0.074 0.926 30 H 0.081 0.919 31 H 0.069 0.931 32 H 0.083 0.917 33 H 0.074 0.926 34 H 0.067 0.933 35 H 0.078 0.922 36 H 0.093 0.907 37 H 0.097 0.903 38 H 0.092 0.908 39 H 0.088 0.912 40 H 0.098 0.902 41 H 0.087 0.913 42 H 0.101 0.899 43 H 0.126 0.874 44 H 0.112 0.888 45 H 0.083 0.917 46 H 0.118 0.882 47 H 0.186 0.814 48 H 0.152 0.848 49 H 0.240 0.760 50 H 0.191 0.809 51 H 0.108 0.892 52 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 2.996 0.862 0.444 3.149 hybrid contribution -0.030 0.692 0.952 1.177 sum 2.966 1.554 1.395 3.628 Atomic orbital electron populations 1.21540 0.94184 1.01751 1.01911 1.25890 1.00440 1.03003 1.12974 1.21608 1.01243 0.94650 1.02306 1.21549 1.00983 1.00023 0.96946 0.76367 0.62457 0.52788 0.64629 1.27162 1.07138 1.09797 1.17496 1.27113 1.25419 1.05018 1.04402 1.85392 1.79158 1.46593 1.46953 1.22731 0.96917 0.91496 0.84734 1.23497 1.01648 0.97183 0.97061 1.23219 1.02671 0.89522 0.92522 1.60773 1.35747 1.15142 1.07564 1.20189 0.89137 0.95981 0.90491 1.18241 0.85034 1.01431 0.95317 1.91512 1.44622 1.94853 1.79826 1.21611 0.91191 0.95258 0.99963 1.21254 0.97331 1.00931 0.97357 1.24927 1.01671 0.99921 0.91359 1.86519 1.82436 1.40208 1.26392 0.85340 0.76351 0.81229 0.77454 1.16839 1.19467 1.17678 1.22837 0.97736 0.90224 0.93903 1.67527 1.00859 1.21729 1.31592 1.23094 1.03330 0.91200 0.92047 0.91932 0.93350 0.92621 0.91879 0.93101 0.91660 0.92609 0.93284 0.92164 0.90740 0.90324 0.90753 0.91223 0.90198 0.91311 0.89869 0.87432 0.88769 0.91699 0.88226 0.81402 0.84842 0.75993 0.80879 0.89245 0.87788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.07 7.85 71.98 0.56 0.50 16 2 C -0.38 0.18 0.53 -10.79 -0.01 0.17 16 3 C -0.14 0.20 7.85 71.98 0.56 0.77 16 4 C -0.14 -0.13 7.85 71.98 0.56 0.44 16 5 Si 1.31 -3.25 8.14 68.60 0.56 -2.69 16 6 C -0.51 1.67 8.04 113.37 0.91 2.58 16 7 C -0.52 0.90 8.57 113.37 0.97 1.87 16 8 O -0.62 -0.57 8.34 -148.98 -1.24 -1.82 16 9 C 0.10 0.00 2.85 31.78 0.09 0.09 16 10 C -0.16 0.28 6.05 31.98 0.19 0.48 16 11 C 0.05 0.02 5.59 86.77 0.49 0.50 16 12 N -0.47 -2.13 5.14 -691.46 -3.55 -5.68 16 13 C 0.28 1.35 6.16 133.06 0.82 2.17 16 14 C 0.02 0.09 7.02 22.58 0.16 0.25 16 15 F -0.13 -0.71 15.75 44.97 0.71 0.00 16 16 C -0.05 0.02 9.75 22.48 0.22 0.24 16 17 C -0.17 0.37 5.40 -19.77 -0.11 0.26 16 18 C -0.07 0.36 2.83 71.24 0.20 0.56 16 19 O -0.55 2.19 12.78 -148.98 -1.90 0.28 16 20 Si 0.97 -4.95 25.10 68.60 1.72 -3.23 16 21 H -0.24 1.33 7.11 99.48 0.71 2.04 16 22 H -0.27 0.32 7.11 99.48 0.71 1.03 16 23 H -0.25 0.96 7.11 99.48 0.71 1.67 16 24 C 0.11 -0.03 9.84 84.62 0.83 0.80 16 25 N -0.50 -2.02 7.95 -193.04 -1.53 -3.55 16 26 C 0.03 0.11 6.54 86.65 0.57 0.67 16 27 H 0.06 -0.08 7.79 -2.39 -0.02 -0.10 16 28 H 0.05 0.07 8.14 -2.39 -0.02 0.05 16 29 H 0.05 0.08 7.97 -2.38 -0.02 0.06 16 30 H 0.06 -0.18 7.79 -2.38 -0.02 -0.20 16 31 H 0.05 -0.01 8.14 -2.39 -0.02 -0.03 16 32 H 0.06 -0.21 7.79 -2.39 -0.02 -0.23 16 33 H 0.05 0.10 7.97 -2.39 -0.02 0.08 16 34 H 0.05 0.08 8.14 -2.38 -0.02 0.06 16 35 H 0.06 -0.03 7.79 -2.39 -0.02 -0.05 16 36 H 0.07 -0.34 6.34 -2.39 -0.02 -0.35 16 37 H 0.08 -0.30 7.79 -2.39 -0.02 -0.32 16 38 H 0.07 -0.21 7.79 -2.39 -0.02 -0.23 16 39 H 0.07 -0.05 7.79 -2.39 -0.02 -0.07 16 40 H 0.08 -0.21 7.79 -2.39 -0.02 -0.23 16 41 H 0.07 -0.16 7.12 -2.39 -0.02 -0.18 16 42 H 0.08 -0.22 6.31 -2.39 -0.02 -0.24 16 43 H 0.11 -0.59 6.26 -2.39 -0.01 -0.61 16 44 H 0.09 -0.08 8.14 -2.39 -0.02 -0.10 16 45 H 0.06 -0.05 7.79 -2.38 -0.02 -0.07 16 46 H 0.10 0.03 7.58 -2.39 -0.02 0.02 16 47 H 0.17 -0.54 8.06 -2.91 -0.02 -0.57 16 48 H 0.13 -0.96 7.96 -2.39 -0.02 -0.98 16 49 H 0.39 -4.03 8.70 -74.05 -0.64 -4.67 16 50 H 0.17 -0.73 4.88 -2.91 -0.01 -0.75 16 51 H 0.09 0.49 8.06 -2.39 -0.02 0.47 16 52 H 0.10 0.43 5.91 -2.39 -0.01 0.42 16 Total: 0.00 -11.23 403.02 2.81 -8.42 By element: Atomic # 1 Polarization: -5.10 SS G_CDS: 1.02 Total: -4.08 kcal Atomic # 6 Polarization: 5.32 SS G_CDS: 7.03 Total: 12.35 kcal Atomic # 7 Polarization: -4.15 SS G_CDS: -5.09 Total: -9.24 kcal Atomic # 8 Polarization: 1.61 SS G_CDS: -3.15 Total: -1.53 kcal Atomic # 9 Polarization: -0.71 SS G_CDS: 0.71 Total: 0.00 kcal Atomic # 14 Polarization: -8.20 SS G_CDS: 2.28 Total: -5.92 kcal Total: -11.23 2.81 -8.42 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_12102092_17656566.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.173 kcal (2) G-P(sol) polarization free energy of solvation -11.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -8.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds