Wall clock time and date at job start Mon Mar 8 2021 03:49:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86293 * 109.47041 * 2 1 4 4 C 1.50699 * 109.47152 * 239.99653 * 2 1 3 5 5 C 1.38603 * 120.71958 * 119.72597 * 4 2 1 6 6 N 1.32276 * 119.19525 * 179.78793 * 5 4 2 7 7 C 1.32494 * 120.74227 * 0.46771 * 6 5 4 8 8 N 1.38400 * 119.21754 * 179.75494 * 7 6 5 9 9 C 1.46499 * 120.00135 * 0.02562 * 8 7 6 10 10 H 1.08995 * 112.84833 * 25.33708 * 9 8 7 11 11 C 1.53783 * 113.61364 * 156.52432 * 9 8 7 12 12 C 1.53778 * 87.07856 * 139.98383 * 11 9 8 13 13 H 1.08996 * 113.61745 * 89.20630 * 12 11 9 14 14 N 1.46511 * 113.61556 * 220.02221 * 12 11 9 15 15 C 1.34776 * 119.99776 * 205.00165 * 14 12 11 16 16 O 1.21504 * 120.00067 * 359.97438 * 15 14 12 17 17 O 1.34640 * 119.99806 * 179.97438 * 15 14 12 18 18 C 1.45196 * 117.00014 * 179.97438 * 17 15 14 19 19 C 1.50706 * 109.46856 * 180.02562 * 18 17 15 20 20 C 1.38236 * 119.99934 * 269.72512 * 19 18 17 21 21 C 1.38228 * 119.99727 * 179.77024 * 20 19 18 22 22 C 1.38233 * 120.00199 * 0.50815 * 21 20 19 23 23 C 1.38231 * 120.00169 * 359.74324 * 22 21 20 24 24 C 1.38233 * 120.00128 * 90.00351 * 19 18 17 25 25 C 1.53778 * 113.61852 * 254.13404 * 9 8 7 26 26 N 1.32496 * 121.56160 * 359.78552 * 7 6 5 27 27 C 1.32274 * 120.74384 * 359.96852 * 26 7 6 28 28 H 0.96700 * 114.00311 * 300.00531 * 1 2 3 29 29 H 1.09008 * 109.46477 * 119.99697 * 2 1 3 30 30 H 1.48501 * 109.99918 * 178.67685 * 3 2 1 31 31 H 1.48506 * 109.99973 * 299.99283 * 3 2 1 32 32 H 1.07999 * 120.40007 * 359.97438 * 5 4 2 33 33 H 0.97006 * 119.99994 * 180.02562 * 8 7 6 34 34 H 1.08992 * 113.62034 * 254.53229 * 11 9 8 35 35 H 1.09005 * 113.61280 * 25.43597 * 11 9 8 36 36 H 0.96994 * 119.99876 * 24.99964 * 14 12 11 37 37 H 1.08994 * 109.47207 * 300.00116 * 18 17 15 38 38 H 1.09002 * 109.46939 * 60.00219 * 18 17 15 39 39 H 1.08001 * 120.00067 * 0.02562 * 20 19 18 40 40 H 1.08008 * 119.99990 * 180.23544 * 21 20 19 41 41 H 1.08004 * 120.00014 * 179.72674 * 22 21 20 42 42 H 1.07999 * 120.00549 * 179.97438 * 23 22 21 43 43 H 1.08007 * 119.99869 * 0.02562 * 24 19 18 44 44 H 1.09005 * 113.61373 * 334.57152 * 25 9 8 45 45 H 1.08993 * 113.61181 * 105.46808 * 25 9 8 46 46 H 1.07999 * 120.40039 * 180.02562 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7105 -1.2304 5 6 2.7244 -0.0497 -2.1554 6 7 3.1522 -0.7037 -3.2226 7 6 2.8231 -1.9724 -3.4166 8 7 3.2841 -2.6247 -4.5468 9 6 4.1260 -1.9127 -5.5114 10 1 4.6723 -1.0822 -5.0643 11 6 5.0066 -2.8414 -6.3639 12 6 4.6860 -1.9226 -7.5546 13 1 5.3860 -1.0949 -7.6683 14 7 4.4517 -2.6455 -8.8073 15 6 4.6579 -2.0307 -9.9888 16 8 5.0377 -0.8768 -10.0151 17 8 4.4430 -2.6951 -11.1399 18 6 4.6850 -1.9702 -12.3745 19 6 4.3930 -2.8677 -13.5494 20 6 5.3976 -3.6493 -14.0887 21 6 5.1285 -4.4760 -15.1633 22 6 3.8575 -4.5133 -15.7054 23 6 2.8541 -3.7279 -15.1695 24 6 3.1219 -2.9050 -14.0915 25 6 3.3935 -1.5397 -6.8111 26 7 2.0627 -2.6312 -2.5545 27 6 1.6057 -2.0372 -1.4645 28 1 -0.3934 0.4418 0.7650 29 1 1.7923 -0.5138 0.8901 30 1 3.5346 1.7702 0.0322 31 1 1.5616 2.4678 -1.2086 32 1 2.9923 0.9857 -2.0050 33 1 3.0497 -3.5534 -4.7003 34 1 6.0578 -2.8321 -6.0759 35 1 4.6045 -3.8491 -6.4692 36 1 4.1482 -3.5665 -8.7862 37 1 4.0358 -1.0957 -12.4155 38 1 5.7268 -1.6515 -12.4104 39 1 6.3917 -3.6170 -13.6677 40 1 5.9125 -5.0895 -15.5823 41 1 3.6484 -5.1560 -16.5479 42 1 1.8611 -3.7567 -15.5932 43 1 2.3382 -2.2907 -13.6733 44 1 2.5495 -2.1908 -7.0389 45 1 3.1444 -0.4811 -6.8834 46 1 0.9866 -2.5796 -0.7653 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_12109460_12175864.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 03:49:23 Heat of formation + Delta-G solvation = 12.557142 kcal Electronic energy + Delta-G solvation = -29394.705404 eV Core-core repulsion = 25059.655386 eV Total energy + Delta-G solvation = -4335.050018 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 357.152 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.14060 -41.60733 -40.49538 -39.91247 -38.02804 -37.39156 -36.02923 -34.74537 -34.29387 -33.04686 -32.03488 -31.90628 -27.74987 -27.00929 -26.86520 -25.98635 -24.94158 -23.59403 -23.12024 -22.47281 -22.07093 -21.39654 -19.78567 -19.30520 -18.88856 -18.39780 -18.16115 -17.55158 -17.48710 -16.81008 -16.70298 -16.39850 -16.15777 -16.06124 -15.91432 -15.72748 -15.27955 -15.01136 -14.71184 -14.62466 -14.48987 -14.33260 -14.03174 -13.91733 -13.74956 -13.68526 -13.32670 -13.17447 -12.57279 -12.44068 -12.32357 -12.19890 -12.13149 -12.10038 -11.84507 -11.77096 -11.59410 -11.53623 -11.26109 -10.60390 -10.24414 -9.97914 -9.91402 -9.89429 -9.11721 -5.07291 0.03255 0.11100 0.14710 0.41194 1.20043 1.24729 1.56488 1.80193 1.82356 1.88061 2.75207 2.75682 3.06725 3.18467 3.28016 3.31899 3.38181 3.56527 3.68908 3.71424 3.74587 3.76746 3.78386 3.86235 4.01683 4.10973 4.14876 4.20589 4.30714 4.43823 4.46123 4.47185 4.47962 4.51031 4.63843 4.67215 4.73250 4.87051 4.92627 4.94323 5.03309 5.19596 5.35723 5.36514 5.46322 5.52545 5.53340 5.74715 5.96067 5.96652 6.32803 6.37429 6.56298 7.26269 7.33137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.548 6.548 2 C -0.050 4.050 3 Si 0.680 3.320 4 C -0.247 4.247 5 C 0.194 3.806 6 N -0.560 5.560 7 C 0.567 3.433 8 N -0.682 5.682 9 C 0.143 3.857 10 H 0.125 0.875 11 C -0.153 4.153 12 C 0.144 3.856 13 H 0.126 0.874 14 N -0.697 5.697 15 C 0.648 3.352 16 O -0.569 6.569 17 O -0.365 6.365 18 C 0.130 3.870 19 C -0.102 4.102 20 C -0.093 4.093 21 C -0.123 4.123 22 C -0.107 4.107 23 C -0.123 4.123 24 C -0.093 4.093 25 C -0.168 4.168 26 N -0.567 5.567 27 C 0.227 3.773 28 H 0.384 0.616 29 H 0.077 0.923 30 H -0.252 1.252 31 H -0.249 1.249 32 H 0.158 0.842 33 H 0.416 0.584 34 H 0.090 0.910 35 H 0.096 0.904 36 H 0.408 0.592 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.125 0.875 40 H 0.127 0.873 41 H 0.126 0.874 42 H 0.127 0.873 43 H 0.125 0.875 44 H 0.091 0.909 45 H 0.082 0.918 46 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.649 -1.276 3.369 3.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.354 6.354 2 C -0.163 4.163 3 Si 0.581 3.419 4 C -0.255 4.255 5 C 0.026 3.974 6 N -0.282 5.282 7 C 0.211 3.789 8 N -0.318 5.318 9 C 0.037 3.963 10 H 0.143 0.857 11 C -0.192 4.192 12 C 0.039 3.961 13 H 0.144 0.856 14 N -0.356 5.356 15 C 0.401 3.599 16 O -0.458 6.458 17 O -0.280 6.280 18 C 0.056 3.944 19 C -0.103 4.103 20 C -0.111 4.111 21 C -0.141 4.141 22 C -0.125 4.125 23 C -0.141 4.141 24 C -0.111 4.111 25 C -0.208 4.208 26 N -0.288 5.288 27 C 0.059 3.941 28 H 0.232 0.768 29 H 0.095 0.905 30 H -0.177 1.177 31 H -0.173 1.173 32 H 0.174 0.826 33 H 0.254 0.746 34 H 0.109 0.891 35 H 0.114 0.886 36 H 0.244 0.756 37 H 0.100 0.900 38 H 0.100 0.900 39 H 0.143 0.857 40 H 0.145 0.855 41 H 0.144 0.856 42 H 0.145 0.855 43 H 0.143 0.857 44 H 0.109 0.891 45 H 0.101 0.899 46 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 0.602 -0.793 1.294 1.633 hybrid contribution -0.563 -0.835 0.475 1.113 sum 0.039 -1.628 1.769 2.405 Atomic orbital electron populations 1.86484 1.17265 1.81827 1.49870 1.24302 0.85618 1.09954 0.96382 0.95063 0.80883 0.78110 0.87855 1.20744 1.06824 0.97617 1.00358 1.22590 0.89505 0.98406 0.86849 1.67876 1.28411 1.08582 1.23323 1.19385 0.86942 0.85616 0.86985 1.44067 1.53786 1.14389 1.19577 1.22255 0.91507 0.95933 0.86625 0.85699 1.23823 1.01793 0.99309 0.94295 1.22328 0.98357 0.95838 0.79535 0.85650 1.44609 1.71363 1.17056 1.02544 1.18175 0.76808 0.83403 0.81478 1.91024 1.51167 1.16504 1.87099 1.86310 1.82329 1.45404 1.13915 1.21749 1.02601 0.92658 0.77358 1.19500 0.94594 0.99742 0.96419 1.21119 0.99038 0.94948 0.96038 1.21209 0.97215 0.99111 0.96601 1.21309 0.93199 0.98443 0.99545 1.21210 0.99669 0.96675 0.96578 1.21123 0.95728 0.98309 0.95985 1.24127 0.98085 1.03562 0.95040 1.67998 1.15945 1.39326 1.05556 1.22827 0.89853 0.90530 0.90886 0.76799 0.90543 1.17684 1.17297 0.82554 0.74610 0.89149 0.88591 0.75647 0.90043 0.90008 0.85694 0.85536 0.85639 0.85543 0.85715 0.89059 0.89904 0.80997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 0.49 12.76 -35.23 -0.45 0.04 16 2 C -0.05 0.06 2.84 36.01 0.10 0.16 16 3 Si 0.68 -1.32 29.87 -169.99 -5.08 -6.40 16 4 C -0.25 -0.47 5.43 -104.35 -0.57 -1.03 16 5 C 0.19 0.57 9.92 -17.23 -0.17 0.40 16 6 N -0.56 -2.19 9.15 -13.93 -0.13 -2.32 16 7 C 0.57 1.95 8.43 -322.81 -2.72 -0.77 16 8 N -0.68 -0.39 5.51 -55.01 -0.30 -0.70 16 9 C 0.14 -0.10 4.22 -67.12 -0.28 -0.38 16 10 H 0.13 0.04 7.41 -51.93 -0.38 -0.34 16 11 C -0.15 0.40 7.58 -25.92 -0.20 0.20 16 12 C 0.14 -0.10 4.24 -67.02 -0.28 -0.38 16 13 H 0.13 0.07 7.46 -51.93 -0.39 -0.32 16 14 N -0.70 0.00 5.36 -57.84 -0.31 -0.31 16 15 C 0.65 2.09 8.75 54.05 0.47 2.56 16 16 O -0.57 -3.60 15.73 -19.27 -0.30 -3.90 16 17 O -0.37 -0.98 10.25 -40.32 -0.41 -1.39 16 18 C 0.13 0.22 5.60 36.01 0.20 0.42 16 19 C -0.10 -0.15 5.52 -104.62 -0.58 -0.73 16 20 C -0.09 -0.08 9.70 -39.59 -0.38 -0.47 16 21 C -0.12 -0.04 10.05 -39.59 -0.40 -0.44 16 22 C -0.11 -0.02 10.05 -39.59 -0.40 -0.42 16 23 C -0.12 -0.05 10.05 -39.59 -0.40 -0.45 16 24 C -0.09 -0.09 9.70 -39.58 -0.38 -0.48 16 25 C -0.17 0.06 7.69 -25.83 -0.20 -0.14 16 26 N -0.57 -2.05 10.46 -13.93 -0.15 -2.20 16 27 C 0.23 0.51 10.92 -17.23 -0.19 0.32 16 28 H 0.38 -2.25 8.74 45.56 0.40 -1.85 16 29 H 0.08 -0.23 7.96 -51.92 -0.41 -0.65 16 30 H -0.25 -0.09 7.11 56.52 0.40 0.31 16 31 H -0.25 -0.35 7.11 56.52 0.40 0.06 16 32 H 0.16 0.25 5.04 -52.49 -0.26 -0.01 16 33 H 0.42 -0.37 8.83 -40.82 -0.36 -0.73 16 34 H 0.09 -0.26 8.14 -51.93 -0.42 -0.68 16 35 H 0.10 -0.37 8.09 -51.93 -0.42 -0.79 16 36 H 0.41 -0.88 8.84 -40.82 -0.36 -1.24 16 37 H 0.08 0.12 8.08 -51.93 -0.42 -0.30 16 38 H 0.08 0.11 8.08 -51.93 -0.42 -0.31 16 39 H 0.13 -0.06 8.06 -52.49 -0.42 -0.48 16 40 H 0.13 -0.19 8.06 -52.48 -0.42 -0.61 16 41 H 0.13 -0.20 8.06 -52.48 -0.42 -0.63 16 42 H 0.13 -0.17 8.06 -52.49 -0.42 -0.60 16 43 H 0.12 -0.04 8.06 -52.48 -0.42 -0.46 16 44 H 0.09 -0.03 8.14 -51.93 -0.42 -0.46 16 45 H 0.08 0.08 8.14 -51.93 -0.42 -0.34 16 46 H 0.17 -0.03 8.06 -52.49 -0.42 -0.45 16 LS Contribution 395.30 15.07 5.96 5.96 Total: 0.00 -10.16 395.30 -13.58 -23.74 By element: Atomic # 1 Polarization: -4.86 SS G_CDS: -6.03 Total: -10.89 kcal Atomic # 6 Polarization: 4.74 SS G_CDS: -6.37 Total: -1.63 kcal Atomic # 7 Polarization: -4.64 SS G_CDS: -0.89 Total: -5.52 kcal Atomic # 8 Polarization: -4.08 SS G_CDS: -1.17 Total: -5.25 kcal Atomic # 14 Polarization: -1.32 SS G_CDS: -5.08 Total: -6.40 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -10.16 -13.58 -23.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_12109460_12175864.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.297 kcal (2) G-P(sol) polarization free energy of solvation -10.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.739 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds