Wall clock time and date at job start Mon Mar 8 2021 03:49:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86293 * 109.47041 * 2 1 4 4 C 1.50699 * 109.47152 * 239.99653 * 2 1 3 5 5 C 1.38603 * 120.71958 * 119.72597 * 4 2 1 6 6 N 1.32276 * 119.19525 * 179.78793 * 5 4 2 7 7 C 1.32494 * 120.74227 * 0.46771 * 6 5 4 8 8 N 1.38400 * 119.21754 * 179.75494 * 7 6 5 9 9 C 1.46499 * 120.00135 * 0.02562 * 8 7 6 10 10 H 1.08995 * 112.84833 * 25.33708 * 9 8 7 11 11 C 1.53783 * 113.61364 * 156.52432 * 9 8 7 12 12 C 1.53778 * 87.07856 * 139.98383 * 11 9 8 13 13 H 1.08996 * 113.61745 * 89.20630 * 12 11 9 14 14 N 1.46511 * 113.61556 * 220.02221 * 12 11 9 15 15 C 1.34776 * 119.99776 * 205.00165 * 14 12 11 16 16 O 1.21504 * 120.00067 * 359.97438 * 15 14 12 17 17 O 1.34640 * 119.99806 * 179.97438 * 15 14 12 18 18 C 1.45196 * 117.00014 * 179.97438 * 17 15 14 19 19 C 1.50706 * 109.46856 * 180.02562 * 18 17 15 20 20 C 1.38236 * 119.99934 * 269.72512 * 19 18 17 21 21 C 1.38228 * 119.99727 * 179.77024 * 20 19 18 22 22 C 1.38233 * 120.00199 * 0.50815 * 21 20 19 23 23 C 1.38231 * 120.00169 * 359.74324 * 22 21 20 24 24 C 1.38233 * 120.00128 * 90.00351 * 19 18 17 25 25 C 1.53778 * 113.61852 * 254.13404 * 9 8 7 26 26 N 1.32496 * 121.56160 * 359.78552 * 7 6 5 27 27 C 1.32274 * 120.74384 * 359.96852 * 26 7 6 28 28 H 0.96700 * 114.00311 * 300.00531 * 1 2 3 29 29 H 1.09008 * 109.46477 * 119.99697 * 2 1 3 30 30 H 1.48501 * 109.99918 * 178.67685 * 3 2 1 31 31 H 1.48506 * 109.99973 * 299.99283 * 3 2 1 32 32 H 1.07999 * 120.40007 * 359.97438 * 5 4 2 33 33 H 0.97006 * 119.99994 * 180.02562 * 8 7 6 34 34 H 1.08992 * 113.62034 * 254.53229 * 11 9 8 35 35 H 1.09005 * 113.61280 * 25.43597 * 11 9 8 36 36 H 0.96994 * 119.99876 * 24.99964 * 14 12 11 37 37 H 1.08994 * 109.47207 * 300.00116 * 18 17 15 38 38 H 1.09002 * 109.46939 * 60.00219 * 18 17 15 39 39 H 1.08001 * 120.00067 * 0.02562 * 20 19 18 40 40 H 1.08008 * 119.99990 * 180.23544 * 21 20 19 41 41 H 1.08004 * 120.00014 * 179.72674 * 22 21 20 42 42 H 1.07999 * 120.00549 * 179.97438 * 23 22 21 43 43 H 1.08007 * 119.99869 * 0.02562 * 24 19 18 44 44 H 1.09005 * 113.61373 * 334.57152 * 25 9 8 45 45 H 1.08993 * 113.61181 * 105.46808 * 25 9 8 46 46 H 1.07999 * 120.40039 * 180.02562 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7105 -1.2304 5 6 2.7244 -0.0497 -2.1554 6 7 3.1522 -0.7037 -3.2226 7 6 2.8231 -1.9724 -3.4166 8 7 3.2841 -2.6247 -4.5468 9 6 4.1260 -1.9127 -5.5114 10 1 4.6723 -1.0822 -5.0643 11 6 5.0066 -2.8414 -6.3639 12 6 4.6860 -1.9226 -7.5546 13 1 5.3860 -1.0949 -7.6683 14 7 4.4517 -2.6455 -8.8073 15 6 4.6579 -2.0307 -9.9888 16 8 5.0377 -0.8768 -10.0151 17 8 4.4430 -2.6951 -11.1399 18 6 4.6850 -1.9702 -12.3745 19 6 4.3930 -2.8677 -13.5494 20 6 5.3976 -3.6493 -14.0887 21 6 5.1285 -4.4760 -15.1633 22 6 3.8575 -4.5133 -15.7054 23 6 2.8541 -3.7279 -15.1695 24 6 3.1219 -2.9050 -14.0915 25 6 3.3935 -1.5397 -6.8111 26 7 2.0627 -2.6312 -2.5545 27 6 1.6057 -2.0372 -1.4645 28 1 -0.3934 0.4418 0.7650 29 1 1.7923 -0.5138 0.8901 30 1 3.5346 1.7702 0.0322 31 1 1.5616 2.4678 -1.2086 32 1 2.9923 0.9857 -2.0050 33 1 3.0497 -3.5534 -4.7003 34 1 6.0578 -2.8321 -6.0759 35 1 4.6045 -3.8491 -6.4692 36 1 4.1482 -3.5665 -8.7862 37 1 4.0358 -1.0957 -12.4155 38 1 5.7268 -1.6515 -12.4104 39 1 6.3917 -3.6170 -13.6677 40 1 5.9125 -5.0895 -15.5823 41 1 3.6484 -5.1560 -16.5479 42 1 1.8611 -3.7567 -15.5932 43 1 2.3382 -2.2907 -13.6733 44 1 2.5495 -2.1908 -7.0389 45 1 3.1444 -0.4811 -6.8834 46 1 0.9866 -2.5796 -0.7653 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_12109460_12175864.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 03:49:22 Heat of formation + Delta-G solvation = 12.730577 kcal Electronic energy + Delta-G solvation = -29394.697883 eV Core-core repulsion = 25059.655386 eV Total energy + Delta-G solvation = -4335.042497 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 357.152 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -42.27144 -41.78744 -40.52446 -39.95906 -37.97270 -37.56590 -36.13934 -34.91710 -34.40690 -33.09258 -32.09698 -31.90393 -27.82822 -27.00830 -26.84492 -26.12175 -25.00202 -23.59583 -23.21365 -22.54221 -22.19315 -21.42579 -19.93303 -19.40374 -18.97227 -18.37036 -18.20273 -17.72515 -17.56098 -16.85792 -16.74751 -16.45044 -16.23674 -16.10726 -15.99227 -15.77697 -15.27094 -15.05649 -14.80138 -14.71771 -14.53704 -14.33233 -14.06477 -13.97329 -13.83430 -13.60827 -13.39432 -13.18510 -12.58086 -12.47355 -12.36485 -12.27435 -12.15633 -12.13441 -12.02952 -11.83244 -11.78148 -11.76381 -11.30452 -10.60372 -10.33641 -10.04310 -9.92737 -9.92201 -9.19743 -4.95703 -0.13083 -0.00461 0.06374 0.39926 1.14770 1.31442 1.57835 1.65368 1.73863 1.96869 2.61955 2.72921 2.94138 3.16470 3.26647 3.39707 3.40920 3.46680 3.62230 3.67756 3.72562 3.74433 3.80221 3.87819 4.02875 4.11230 4.16277 4.19036 4.23197 4.43360 4.51114 4.52828 4.56028 4.57315 4.62830 4.63772 4.78328 4.82096 4.91390 4.93892 5.05170 5.10222 5.24992 5.34104 5.45546 5.50370 5.52895 5.64031 5.88186 5.97780 6.23438 6.30058 6.95981 7.12820 7.15813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.565 6.565 2 C -0.052 4.052 3 Si 0.768 3.232 4 C -0.253 4.253 5 C 0.175 3.825 6 N -0.580 5.580 7 C 0.551 3.449 8 N -0.674 5.674 9 C 0.143 3.857 10 H 0.113 0.887 11 C -0.131 4.131 12 C 0.142 3.858 13 H 0.111 0.889 14 N -0.681 5.681 15 C 0.644 3.356 16 O -0.606 6.606 17 O -0.366 6.366 18 C 0.130 3.870 19 C -0.115 4.115 20 C -0.105 4.105 21 C -0.131 4.131 22 C -0.114 4.114 23 C -0.131 4.131 24 C -0.106 4.106 25 C -0.164 4.164 26 N -0.581 5.581 27 C 0.220 3.780 28 H 0.406 0.594 29 H 0.104 0.896 30 H -0.285 1.285 31 H -0.299 1.299 32 H 0.160 0.840 33 H 0.423 0.577 34 H 0.100 0.900 35 H 0.117 0.883 36 H 0.421 0.579 37 H 0.079 0.921 38 H 0.082 0.918 39 H 0.134 0.866 40 H 0.144 0.856 41 H 0.144 0.856 42 H 0.143 0.857 43 H 0.131 0.869 44 H 0.095 0.905 45 H 0.063 0.937 46 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.051 -2.762 4.060 5.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.376 6.376 2 C -0.164 4.164 3 Si 0.675 3.325 4 C -0.261 4.261 5 C 0.008 3.992 6 N -0.302 5.302 7 C 0.194 3.806 8 N -0.310 5.310 9 C 0.037 3.963 10 H 0.131 0.869 11 C -0.170 4.170 12 C 0.038 3.962 13 H 0.129 0.871 14 N -0.341 5.341 15 C 0.398 3.602 16 O -0.497 6.497 17 O -0.280 6.280 18 C 0.056 3.944 19 C -0.115 4.115 20 C -0.123 4.123 21 C -0.148 4.148 22 C -0.131 4.131 23 C -0.149 4.149 24 C -0.124 4.124 25 C -0.205 4.205 26 N -0.303 5.303 27 C 0.052 3.948 28 H 0.258 0.742 29 H 0.122 0.878 30 H -0.212 1.212 31 H -0.227 1.227 32 H 0.177 0.823 33 H 0.263 0.737 34 H 0.119 0.881 35 H 0.136 0.864 36 H 0.259 0.741 37 H 0.097 0.903 38 H 0.100 0.900 39 H 0.152 0.848 40 H 0.162 0.838 41 H 0.162 0.838 42 H 0.161 0.839 43 H 0.149 0.851 44 H 0.114 0.886 45 H 0.082 0.918 46 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 0.175 -2.318 2.023 3.082 hybrid contribution -0.471 -0.340 0.223 0.622 sum -0.296 -2.658 2.247 3.493 Atomic orbital electron populations 1.86430 1.17097 1.82396 1.51639 1.24390 0.85877 1.10150 0.95967 0.94183 0.77568 0.75712 0.85080 1.21082 1.06163 0.97759 1.01058 1.22823 0.90280 0.98789 0.87313 1.67863 1.29217 1.09111 1.24035 1.19679 0.87364 0.85746 0.87809 1.44105 1.53422 1.14618 1.18867 1.22213 0.91614 0.96329 0.86184 0.86943 1.23728 1.02046 0.99465 0.91718 1.22310 0.97937 0.96257 0.79733 0.87075 1.44588 1.70243 1.17503 1.01717 1.18412 0.76580 0.83117 0.82138 1.90997 1.53013 1.18148 1.87588 1.86315 1.82206 1.45425 1.14081 1.21792 1.02567 0.92769 0.77266 1.19561 0.95158 1.00249 0.96504 1.21322 0.99406 0.95083 0.96447 1.21488 0.97913 0.99069 0.96368 1.21621 0.93088 0.98465 0.99964 1.21478 1.00640 0.96416 0.96375 1.21313 0.95841 0.98787 0.96465 1.24084 0.98401 1.02525 0.95451 1.68042 1.16373 1.39726 1.06182 1.23276 0.89785 0.90895 0.90887 0.74234 0.87793 1.21205 1.22738 0.82349 0.73733 0.88148 0.86434 0.74129 0.90296 0.90015 0.84837 0.83822 0.83781 0.83946 0.85079 0.88620 0.91768 0.78817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.57 1.69 12.76 -148.98 -1.90 -0.21 16 2 C -0.05 0.16 2.84 71.24 0.20 0.37 16 3 Si 0.77 -2.81 29.87 68.60 2.05 -0.76 16 4 C -0.25 -1.00 5.43 -19.69 -0.11 -1.11 16 5 C 0.17 1.26 9.92 84.71 0.84 2.10 16 6 N -0.58 -5.45 9.15 -197.99 -1.81 -7.26 16 7 C 0.55 4.26 8.43 261.49 2.20 6.47 16 8 N -0.67 -1.02 5.51 -327.94 -1.81 -2.83 16 9 C 0.14 -0.10 4.22 45.52 0.19 0.09 16 10 H 0.11 0.25 7.41 -2.39 -0.02 0.23 16 11 C -0.13 0.77 7.58 31.12 0.24 1.00 16 12 C 0.14 -0.11 4.24 45.57 0.19 0.08 16 13 H 0.11 0.30 7.46 -2.39 -0.02 0.28 16 14 N -0.68 -0.15 5.36 -567.32 -3.04 -3.19 16 15 C 0.64 4.83 8.75 129.79 1.14 5.96 16 16 O -0.61 -8.76 15.73 19.83 0.31 -8.45 16 17 O -0.37 -2.30 10.25 -55.49 -0.57 -2.87 16 18 C 0.13 0.62 5.60 71.24 0.40 1.02 16 19 C -0.11 -0.42 5.52 -19.86 -0.11 -0.53 16 20 C -0.10 -0.22 9.70 22.27 0.22 -0.01 16 21 C -0.13 -0.04 10.05 22.27 0.22 0.18 16 22 C -0.11 0.02 10.05 22.27 0.22 0.24 16 23 C -0.13 -0.08 10.05 22.27 0.22 0.14 16 24 C -0.11 -0.27 9.70 22.27 0.22 -0.05 16 25 C -0.16 -0.05 7.69 31.18 0.24 0.19 16 26 N -0.58 -4.41 10.46 -197.99 -2.07 -6.48 16 27 C 0.22 0.96 10.92 84.71 0.93 1.88 16 28 H 0.41 -5.47 8.74 -74.06 -0.65 -6.12 16 29 H 0.10 -0.86 7.96 -2.38 -0.02 -0.88 16 30 H -0.28 -0.46 7.11 99.48 0.71 0.24 16 31 H -0.30 -1.41 7.11 99.48 0.71 -0.70 16 32 H 0.16 0.83 5.04 -2.91 -0.01 0.81 16 33 H 0.42 -0.89 8.83 -92.70 -0.82 -1.71 16 34 H 0.10 -0.69 8.14 -2.39 -0.02 -0.71 16 35 H 0.12 -1.14 8.09 -2.38 -0.02 -1.16 16 36 H 0.42 -2.09 8.84 -92.71 -0.82 -2.91 16 37 H 0.08 0.38 8.08 -2.39 -0.02 0.36 16 38 H 0.08 0.35 8.08 -2.39 -0.02 0.33 16 39 H 0.13 -0.07 8.06 -2.91 -0.02 -0.10 16 40 H 0.14 -0.55 8.06 -2.91 -0.02 -0.57 16 41 H 0.14 -0.65 8.06 -2.91 -0.02 -0.67 16 42 H 0.14 -0.48 8.06 -2.91 -0.02 -0.50 16 43 H 0.13 0.03 8.06 -2.91 -0.02 0.01 16 44 H 0.10 -0.04 8.14 -2.38 -0.02 -0.06 16 45 H 0.06 0.27 8.14 -2.39 -0.02 0.25 16 46 H 0.20 -0.25 8.06 -2.91 -0.02 -0.27 16 Total: 0.00 -25.28 395.30 -2.59 -27.87 By element: Atomic # 1 Polarization: -12.65 SS G_CDS: -1.20 Total: -13.84 kcal Atomic # 6 Polarization: 10.56 SS G_CDS: 7.45 Total: 18.02 kcal Atomic # 7 Polarization: -11.03 SS G_CDS: -8.73 Total: -19.76 kcal Atomic # 8 Polarization: -9.36 SS G_CDS: -2.16 Total: -11.52 kcal Atomic # 14 Polarization: -2.81 SS G_CDS: 2.05 Total: -0.76 kcal Total: -25.28 -2.59 -27.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_12109460_12175864.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.596 kcal (2) G-P(sol) polarization free energy of solvation -25.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.865 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds